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__init__.py
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Tue, Nov 5, 16:23

__init__.py

import scipy.sparse as _aka_sparse
import numpy as _aka_np
import py11_akantu
private_keys = set(dir(py11_akantu)) - set(dir())
for k in private_keys:
globals()[k] = getattr(py11_akantu, k)
if py11_akantu.has_mpi():
try:
from mpi4py import MPI # noqa: F401
except Exception:
pass
def initialize(*args, **kwargs):
raise RuntimeError("No need to call initialize,"
" use parseInput to read an input file")
def finalize(*args, **kwargs):
raise RuntimeError("No need to call finalize")
class AkantuSparseMatrix (_aka_sparse.coo_matrix):
def __init__(self, aka_sparse):
self.aka_sparse = aka_sparse
matrix_type = self.aka_sparse.getMatrixType()
sz = self.aka_sparse.size()
row = self.aka_sparse.getIRN()[:, 0] - 1
col = self.aka_sparse.getJCN()[:, 0] - 1
data = self.aka_sparse.getA()[:, 0]
row = row.copy()
col = col.copy()
data = data.copy()
if matrix_type == py11_akantu._symmetric:
non_diags = (row != col)
row_sup = col[non_diags]
col_sup = row[non_diags]
data_sup = data[non_diags]
col = _aka_np.concatenate((col, col_sup))
row = _aka_np.concatenate((row, row_sup))
data = _aka_np.concatenate((data, data_sup))
_aka_sparse.coo_matrix.__init__(
self, (data, (row, col)), shape=(sz, sz))
FromStress = py11_akantu.FromHigherDim
FromTraction = py11_akantu.FromSameDim
py11_akantu.__initialize()

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