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integrator_gauss_inline_impl.cc
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			/**
			* @file integrator_gauss_inline_impl.cc
			*
			* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
			* @author Nicolas Richart <nicolas.richart@epfl.ch>
			*
			* @date creation: Tue Feb 15 2011
			* @date last modification: Mon Jun 23 2014
			*
			* @brief inline function of gauss integrator
			*
			* @section LICENSE
			*
			* Copyright (©) 2014 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			__END_AKANTU__

			#include "fe_engine.hh"
			#if defined(AKANTU_DEBUG_TOOLS)
			# include "aka_debug_tools.hh"
			#endif

			__BEGIN_AKANTU__

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			inline void IntegratorGauss<kind>::initIntegrator(const Array<Real> & nodes,
			const ElementType & type,
			const GhostType & ghost_type) {
			#define INIT_INTEGRATOR(type) \
			computeQuadraturePoints<type>(ghost_type); \
			precomputeJacobiansOnQuadraturePoints<type>(nodes, ghost_type); \
			checkJacobians<type>(ghost_type); \
			multiplyJacobiansByWeights<type>(ghost_type);

			AKANTU_BOOST_ALL_ELEMENT_SWITCH(INIT_INTEGRATOR);
			#undef INIT_INTEGRATOR
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			inline void IntegratorGauss<kind>::integrateOnElement(const Array<Real> & f,
			Real * intf,
			UInt nb_degree_of_freedom,
			const UInt elem,
			const GhostType & ghost_type) const {
			Array<Real> & jac_loc = jacobians(type, ghost_type);

			UInt nb_quadrature_points = ElementClass<type>::getNbQuadraturePoints();
			AKANTU_DEBUG_ASSERT(f.getNbComponent() == nb_degree_of_freedom ,
			"The vector f do not have the good number of component.");

			Real * f_val = f.storage() + elem * f.getNbComponent();
			Real * jac_val = jac_loc.storage() + elem * nb_quadrature_points;

			integrate(f_val, jac_val, intf, nb_degree_of_freedom, nb_quadrature_points);
			}


			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			inline Real IntegratorGauss<kind>::integrate(const Vector<Real> & in_f,
			UInt index,
			const GhostType & ghost_type) const {
			const Array<Real> & jac_loc = jacobians(type, ghost_type);

			UInt nb_quadrature_points = GaussIntegrationElement<type>::getNbQuadraturePoints();
			AKANTU_DEBUG_ASSERT(in_f.size() == nb_quadrature_points ,
			"The vector f do not have nb_quadrature_points entries.");

			Real * jac_val = jac_loc.storage() + index * nb_quadrature_points;
			Real intf;

			integrate(in_f.storage(), jac_val, &intf, 1, nb_quadrature_points);

			return intf;
			}


			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			inline void IntegratorGauss<kind>::integrate(Real f, Real jac, Real * inte,
			UInt nb_degree_of_freedom,
			UInt nb_quadrature_points) const {
			memset(inte, 0, nb_degree_of_freedom * sizeof(Real));

			Real *cjac = jac;
			for (UInt q = 0; q < nb_quadrature_points; ++q) {
			for (UInt dof = 0; dof < nb_degree_of_freedom; ++dof) {
			inte[dof] += f *cjac;
			++f;
			}
			++cjac;
			}
			}




			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			inline const Matrix<Real> & IntegratorGauss<kind>::getQuadraturePoints(const GhostType & ghost_type) const {
			AKANTU_DEBUG_ASSERT(quadrature_points.exists(type, ghost_type),
			"Quadrature points for type "
			<< quadrature_points.printType(type, ghost_type)
			<< " have not been initialized."
			<< " Did you use 'computeQuadraturePoints' function ?");
			return quadrature_points(type, ghost_type);
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			inline void IntegratorGauss<kind>::computeQuadraturePoints(const GhostType & ghost_type) {
			Matrix<Real> & quads = quadrature_points(type, ghost_type);
			quads = GaussIntegrationElement<type>::getQuadraturePoints();
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			inline void IntegratorGauss<kind>::
			computeJacobianOnQuadPointsByElement(const Matrix<Real> & node_coords,
			Vector<Real> & jacobians) {

			Matrix<Real> quad = GaussIntegrationElement<type>::getQuadraturePoints();
			// jacobian
			ElementClass<type>::computeJacobian(quad, node_coords, jacobians);
			}

			/* -------------------------------------------------------------------------- */
			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			IntegratorGauss<kind>::IntegratorGauss(const Mesh & mesh,
			const ID & id,
			const MemoryID & memory_id) :
			Integrator(mesh, id, memory_id) {
			AKANTU_DEBUG_IN();

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			void IntegratorGauss<kind>::checkJacobians(const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			UInt nb_quadrature_points = GaussIntegrationElement<type>::getNbQuadraturePoints();

			UInt nb_element;

			nb_element = mesh.getConnectivity(type,ghost_type).getSize();

			Real * jacobians_val = jacobians(type, ghost_type).storage();

			for (UInt i = 0; i < nb_element*nb_quadrature_points; ++i,++jacobians_val){
			if(*jacobians_val < 0)
			AKANTU_DEBUG_ERROR("Negative jacobian computed,"
			<< " possible problem in the element node ordering (Quadrature Point "
			<< i % nb_quadrature_points << ":"
			<< i / nb_quadrature_points << ":"
			<< type << ":"
			<< ghost_type << ")");

			}
			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			void IntegratorGauss<kind>::precomputeJacobiansOnQuadraturePoints(const Array<Real> & nodes,
			const GhostType & ghost_type) {
			AKANTU_DEBUG_IN();

			UInt spatial_dimension = mesh.getSpatialDimension();
			UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
			UInt nb_quadrature_points = GaussIntegrationElement<type>::getNbQuadraturePoints();

			UInt nb_element = mesh.getNbElement(type,ghost_type);

			Array<Real> * jacobians_tmp;
			if(!jacobians.exists(type, ghost_type))
			jacobians_tmp = &jacobians.alloc(nb_element*nb_quadrature_points,
			1,
			type,
			ghost_type);
			else {
			jacobians_tmp = &jacobians(type, ghost_type);
			jacobians_tmp->resize(nb_element*nb_quadrature_points);
			}

			Array<Real>::vector_iterator jacobians_it =
			jacobians_tmp->begin_reinterpret(nb_quadrature_points, nb_element);

			Array<Real> x_el(0, spatial_dimension * nb_nodes_per_element);
			FEEngine::extractNodalToElementField(mesh, nodes, x_el, type, ghost_type);

			Array<Real>::const_matrix_iterator x_it = x_el.begin(spatial_dimension,
			nb_nodes_per_element);

			// Matrix<Real> local_coord(spatial_dimension, nb_nodes_per_element);
			for (UInt elem = 0; elem < nb_element; ++elem, ++jacobians_it, ++x_it) {
			const Matrix<Real> & x = *x_it;
			Vector<Real> & J = *jacobians_it;
			computeJacobianOnQuadPointsByElement<type>(x, J);
			}

			// >>>>>> DEBUG CODE >>>>>> //
			#if defined(AKANTU_DEBUG_TOOLS)
			#if defined(AKANTU_CORE_CXX11)
			debug::element_manager.print(debug::_dm_integrator,
			[ghost_type, this,
			nb_element, nb_quadrature_points](const Element & el)->std::string {
			std::stringstream out;
			if(el.ghost_type == ghost_type) {
			Array<Real>::vector_iterator jacobians_it =
			jacobians(el.type, el.ghost_type).begin(nb_quadrature_points);
			out << " jacobian: " << jacobians_it[el.element];
			}
			return out.str();
			});
			#endif
			#endif
			// <<<<<< DEBUG CODE <<<<<< //

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			void IntegratorGauss<kind>::multiplyJacobiansByWeights(const GhostType & ghost_type) {
			AKANTU_DEBUG_IN();

			UInt nb_quadrature_points = GaussIntegrationElement<type>::getNbQuadraturePoints();
			UInt nb_element = this->mesh.getNbElement(type, ghost_type);


			Vector<Real> weights = GaussIntegrationElement<type>::getWeights();

			Array<Real>::vector_iterator jacobians_it =
			this->jacobians(type, ghost_type).begin_reinterpret(nb_quadrature_points, nb_element);
			Array<Real>::vector_iterator jacobians_end =
			this->jacobians(type, ghost_type).end_reinterpret(nb_quadrature_points, nb_element);

			for (; jacobians_it != jacobians_end; ++jacobians_it) {
			Vector<Real> & J = *jacobians_it;
			J *= weights;
			}

			AKANTU_DEBUG_OUT();
			}


			/* -------------------------------------------------------------------------- */
			#if defined(AKANTU_COHESIVE_ELEMENT)
			template <>
			template <ElementType type>
			void IntegratorGauss<_ek_cohesive>::precomputeJacobiansOnQuadraturePoints(const Array<Real> & nodes,
			const GhostType & ghost_type) {
			AKANTU_DEBUG_IN();

			UInt spatial_dimension = mesh.getSpatialDimension();
			UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
			UInt nb_quadrature_points = GaussIntegrationElement<type>::getNbQuadraturePoints();

			UInt nb_element = mesh.getNbElement(type,ghost_type);


			Array<Real> * jacobians_tmp;
			if(!jacobians.exists(type, ghost_type))
			jacobians_tmp = &jacobians.alloc(nb_element*nb_quadrature_points,
			1,
			type,
			ghost_type);
			else {
			jacobians_tmp = &jacobians(type, ghost_type);
			jacobians_tmp->resize(nb_element*nb_quadrature_points);
			}

			Array<Real>::vector_iterator jacobians_it =
			jacobians_tmp->begin_reinterpret(nb_quadrature_points, nb_element);

			Vector<Real> weights = GaussIntegrationElement<type>::getWeights();

			Array<Real> x_el(0, spatial_dimension * nb_nodes_per_element);
			FEEngine::extractNodalToElementField(mesh, nodes, x_el, type, ghost_type);

			Array<Real>::const_matrix_iterator x_it = x_el.begin(spatial_dimension,
			nb_nodes_per_element);

			UInt nb_nodes_per_subelement = nb_nodes_per_element / 2;
			Matrix<Real> x(spatial_dimension, nb_nodes_per_subelement);

			// Matrix<Real> local_coord(spatial_dimension, nb_nodes_per_element);
			for (UInt elem = 0; elem < nb_element; ++elem, ++jacobians_it, ++x_it) {

			for (UInt s = 0; s < spatial_dimension; ++s)
			for (UInt n = 0; n < nb_nodes_per_subelement; ++n)
			x(s, n) = ((x_it)(s, n) + (x_it)(s, n + nb_nodes_per_subelement))*.5;

			Vector<Real> & J = *jacobians_it;

			if (type == _cohesive_1d_2)
			J(0) = 1;
			else
			computeJacobianOnQuadPointsByElement<type>(x, J);

			J *= weights;
			}

			AKANTU_DEBUG_OUT();
			}
			#endif

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			void IntegratorGauss<kind>::integrate(const Array<Real> & in_f,
			Array<Real> &intf,
			UInt nb_degree_of_freedom,
			const GhostType & ghost_type,
			const Array<UInt> & filter_elements) const {
			AKANTU_DEBUG_IN();

			AKANTU_DEBUG_ASSERT(jacobians.exists(type, ghost_type),
			"No jacobians for the type "
			<< jacobians.printType(type, ghost_type));

			UInt nb_points = GaussIntegrationElement<type>::getNbQuadraturePoints();

			const Array<Real> & jac_loc = jacobians(type, ghost_type);

			Array<Real>::const_matrix_iterator J_it;
			Array<Real>::matrix_iterator inte_it;
			Array<Real>::const_matrix_iterator f_it;

			UInt nb_element;
			Array<Real> * filtered_J = NULL;
			if(filter_elements != empty_filter) {
			nb_element = filter_elements.getSize();
			filtered_J = new Array<Real>(0, jac_loc.getNbComponent());
			FEEngine::filterElementalData(mesh, jac_loc, *filtered_J, type, ghost_type, filter_elements);
			const Array<Real> & cfiltered_J = *filtered_J; // \todo temporary patch
			J_it = cfiltered_J.begin_reinterpret(nb_points, 1, nb_element);
			} else {
			nb_element = mesh.getNbElement(type,ghost_type);
			J_it = jac_loc.begin_reinterpret(nb_points, 1, nb_element);
			}

			intf.resize(nb_element);

			f_it = in_f.begin_reinterpret(nb_degree_of_freedom, nb_points, nb_element);
			inte_it = intf.begin_reinterpret(nb_degree_of_freedom, 1, nb_element);

			for (UInt el = 0; el < nb_element; ++el, ++J_it, ++f_it, ++inte_it) {
			const Matrix<Real> & f = *f_it;
			const Matrix<Real> & J = *J_it;
			Matrix<Real> & inte_f = *inte_it;

			inte_f.mul<false, false>(f, J);
			}

			delete filtered_J;

			AKANTU_DEBUG_OUT();
			}


			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			Real IntegratorGauss<kind>::integrate(const Array<Real> & in_f,
			const GhostType & ghost_type,
			const Array<UInt> & filter_elements) const {
			AKANTU_DEBUG_IN();

			AKANTU_DEBUG_ASSERT(jacobians.exists(type, ghost_type),
			"No jacobians for the type "
			<< jacobians.printType(type, ghost_type));

			Array<Real> intfv(0, 1);
			integrate<type>(in_f, intfv, 1, ghost_type, filter_elements);

			UInt nb_values = intfv.getSize();
			if(nb_values == 0) return 0.;

			UInt nb_values_to_sum = nb_values >> 1;

			std::sort(intfv.begin(), intfv.end());


			// as long as the half is not empty
			while(nb_values_to_sum) {
			UInt remaining = (nb_values - 2*nb_values_to_sum);
			if(remaining) intfv(nb_values - 2) += intfv(nb_values - 1);

			// sum to consecutive values and store the sum in the first half
			for (UInt i = 0; i < nb_values_to_sum; ++i) {
			intfv(i) = intfv(2i) + intfv(2i + 1);
			}

			nb_values = nb_values_to_sum;
			nb_values_to_sum >>= 1;
			}

			AKANTU_DEBUG_OUT();
			return intfv(0);
			}

			/* -------------------------------------------------------------------------- */
			template <ElementKind kind>
			template <ElementType type>
			void IntegratorGauss<kind>::integrateOnQuadraturePoints(const Array<Real> & in_f,
			Array<Real> &intf,
			UInt nb_degree_of_freedom,
			const GhostType & ghost_type,
			const Array<UInt> & filter_elements) const {
			AKANTU_DEBUG_IN();

			AKANTU_DEBUG_ASSERT(jacobians.exists(type, ghost_type),
			"No jacobians for the type "
			<< jacobians.printType(type, ghost_type));

			UInt nb_element;
			UInt nb_points = GaussIntegrationElement<type>::getNbQuadraturePoints();

			const Array<Real> & jac_loc = jacobians(type, ghost_type);

			Array<Real>::const_scalar_iterator J_it;
			Array<Real>::vector_iterator inte_it;
			Array<Real>::const_vector_iterator f_it;

			Array<Real> * filtered_J = NULL;
			if(filter_elements != empty_filter) {
			nb_element = filter_elements.getSize();
			filtered_J = new Array<Real>(0, jac_loc.getNbComponent());
			FEEngine::filterElementalData(mesh, jac_loc, *filtered_J, type, ghost_type, filter_elements);
			J_it = filtered_J->begin();
			} else {
			nb_element = mesh.getNbElement(type,ghost_type);
			J_it = jac_loc.begin();
			}

			intf.resize(nb_element*nb_points);

			f_it = in_f.begin(nb_degree_of_freedom);
			inte_it = intf.begin(nb_degree_of_freedom);

			for (UInt el = 0; el < nb_element; ++el, ++J_it, ++f_it, ++inte_it) {
			const Real & J = *J_it;
			const Vector<Real> & f = *f_it;
			Vector<Real> & inte_f = *inte_it;

			inte_f = f;
			inte_f *= J;
			}

			delete filtered_J;

			AKANTU_DEBUG_OUT();
			}

rAKA/src/fe_engine/integrator_gauss_inline_impl.cc20387fee70f6bugfixes/ci_deploy_fixes

integrator_gauss_inline_impl.ccView Options

rAKA/src/fe_engine/integrator_gauss_inline_impl.cc
20387fee70f6bugfixes/ci_deploy_fixes

integrator_gauss_inline_impl.cc
View Options