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rAKA/src/model/common/dof_manager/dof_manager_inline_impl.cc
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dof_manager_inline_impl.cc
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/**
* @file dof_manager_inline_impl.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Thu Feb 21 2013
* @date last modification: Wed Jan 31 2018
*
* @brief inline functions of the dof manager
*
* @section LICENSE
*
* Copyright (©) 2014-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "dof_manager.hh"
#include "element_group.hh"
#include "solver_vector.hh"
#include "sparse_matrix.hh"
#include "terms_to_assemble.hh"
/* -------------------------------------------------------------------------- */
#ifndef __AKANTU_DOF_MANAGER_INLINE_IMPL_CC__
#define __AKANTU_DOF_MANAGER_INLINE_IMPL_CC__
namespace akantu {
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasDOFs(const ID & dof_id) const {
auto it = this->dofs.find(dof_id);
return it != this->dofs.end();
}
/* -------------------------------------------------------------------------- */
inline DOFManager::DOFData & DOFManager::getDOFData(const ID & dof_id) {
auto it = this->dofs.find(dof_id);
if (it == this->dofs.end()) {
AKANTU_EXCEPTION("The dof " << dof_id << " does not exists in "
<< this->id);
}
return *it->second;
}
/* -------------------------------------------------------------------------- */
const DOFManager::DOFData & DOFManager::getDOFData(const ID & dof_id) const {
auto it = this->dofs.find(dof_id);
if (it == this->dofs.end()) {
AKANTU_EXCEPTION("The dof " << dof_id << " does not exists in "
<< this->id);
}
return *it->second;
}
/* -------------------------------------------------------------------------- */
inline void DOFManager::extractElementEquationNumber(
const Array<Int> & equation_numbers, const Vector<UInt> & connectivity,
UInt nb_degree_of_freedom, Vector<Int> & element_equation_number) {
for (UInt i = 0, ld = 0; i < connectivity.size(); ++i) {
UInt n = connectivity(i);
for (UInt d = 0; d < nb_degree_of_freedom; ++d, ++ld) {
element_equation_number(ld) =
equation_numbers(n * nb_degree_of_freedom + d);
}
}
}
/* -------------------------------------------------------------------------- */
template <class _DOFData>
inline _DOFData & DOFManager::getDOFDataTyped(const ID & dof_id) {
return aka::as_type<_DOFData>(this->getDOFData(dof_id));
}
/* -------------------------------------------------------------------------- */
template <class _DOFData>
inline const _DOFData & DOFManager::getDOFDataTyped(const ID & dof_id) const {
return aka::as_type<_DOFData>(this->getDOFData(dof_id));
}
/* -------------------------------------------------------------------------- */
inline Array<Real> & DOFManager::getDOFs(const ID & dofs_id) {
return *(this->getDOFData(dofs_id).dof);
}
/* -------------------------------------------------------------------------- */
inline DOFSupportType DOFManager::getSupportType(const ID & dofs_id) const {
return this->getDOFData(dofs_id).support_type;
}
/* -------------------------------------------------------------------------- */
inline Array<Real> & DOFManager::getPreviousDOFs(const ID & dofs_id) {
return *(this->getDOFData(dofs_id).previous);
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasPreviousDOFs(const ID & dofs_id) const {
return (this->getDOFData(dofs_id).previous != nullptr);
}
/* -------------------------------------------------------------------------- */
inline Array<Real> & DOFManager::getDOFsIncrement(const ID & dofs_id) {
return *(this->getDOFData(dofs_id).increment);
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasDOFsIncrement(const ID & dofs_id) const {
return (this->getDOFData(dofs_id).increment != nullptr);
}
/* -------------------------------------------------------------------------- */
inline Array<Real> & DOFManager::getDOFsDerivatives(const ID & dofs_id,
UInt order) {
std::vector<Array<Real> *> & derivatives =
this->getDOFData(dofs_id).dof_derivatives;
if ((order > derivatives.size()) || (derivatives[order - 1] == nullptr))
AKANTU_EXCEPTION("No derivatives of order " << order << " present in "
<< this->id << " for dof "
<< dofs_id);
return *derivatives[order - 1];
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasDOFsDerivatives(const ID & dofs_id,
UInt order) const {
const std::vector<Array<Real> *> & derivatives =
this->getDOFData(dofs_id).dof_derivatives;
return ((order < derivatives.size()) && (derivatives[order - 1] != nullptr));
}
/* -------------------------------------------------------------------------- */
inline const Array<Real> & DOFManager::getSolution(const ID & dofs_id) const {
return this->getDOFData(dofs_id).solution;
}
/* -------------------------------------------------------------------------- */
inline Array<Real> & DOFManager::getSolution(const ID & dofs_id) {
return this->getDOFData(dofs_id).solution;
}
/* -------------------------------------------------------------------------- */
inline const Array<bool> &
DOFManager::getBlockedDOFs(const ID & dofs_id) const {
return *(this->getDOFData(dofs_id).blocked_dofs);
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasBlockedDOFs(const ID & dofs_id) const {
return (this->getDOFData(dofs_id).blocked_dofs != nullptr);
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::isLocalOrMasterDOF(UInt dof_num) {
auto dof_flag = this->dofs_flag(dof_num);
return (dof_flag & NodeFlag::_local_master_mask) == NodeFlag::_normal;
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::isSlaveDOF(UInt dof_num) {
auto dof_flag = this->dofs_flag(dof_num);
return (dof_flag & NodeFlag::_shared_mask) == NodeFlag::_slave;
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::isPureGhostDOF(UInt dof_num) {
auto dof_flag = this->dofs_flag(dof_num);
return (dof_flag & NodeFlag::_shared_mask) == NodeFlag::_pure_ghost;
}
/* -------------------------------------------------------------------------- */
inline Int DOFManager::localToGlobalEquationNumber(Int local) const {
return this->global_equation_number(local);
}
/* -------------------------------------------------------------------------- */
inline bool DOFManager::hasGlobalEquationNumber(Int global) const {
auto it = this->global_to_local_mapping.find(global);
return (it != this->global_to_local_mapping.end());
}
/* -------------------------------------------------------------------------- */
inline Int DOFManager::globalToLocalEquationNumber(Int global) const {
auto it = this->global_to_local_mapping.find(global);
AKANTU_DEBUG_ASSERT(it != this->global_to_local_mapping.end(),
"This global equation number "
<< global << " does not exists in " << this->id);
return it->second;
}
/* -------------------------------------------------------------------------- */
inline NodeFlag DOFManager::getDOFFlag(Int local_id) const {
return this->dofs_flag(local_id);
}
/* -------------------------------------------------------------------------- */
inline const Array<UInt> &
DOFManager::getDOFsAssociatedNodes(const ID & dof_id) const {
const auto & dof_data = this->getDOFData(dof_id);
return dof_data.associated_nodes;
}
/* -------------------------------------------------------------------------- */
const Array<Int> &
DOFManager::getLocalEquationsNumbers(const ID & dof_id) const {
return getDOFData(dof_id).local_equation_number;
}
/* -------------------------------------------------------------------------- */
template <typename Vec>
void DOFManager::assembleMatMulVectToArray_(const ID & dof_id, const ID & A_id,
const Array<Real> & x,
Array<Real> & array,
Real scale_factor) {
Vec tmp_array(aka::as_type<Vec>(*data_cache), this->id + ":tmp_array");
tmp_array.clear();
assembleMatMulVectToGlobalArray(dof_id, A_id, x, tmp_array, scale_factor);
getArrayPerDOFs(dof_id, tmp_array, array);
}
/* -------------------------------------------------------------------------- */
template <typename Mat>
void DOFManager::assembleElementalMatricesToMatrix_(
Mat & A, const ID & dof_id, const Array<Real> & elementary_mat,
const ElementType & type, const GhostType & ghost_type,
const MatrixType & elemental_matrix_type,
const Array<UInt> & filter_elements) {
AKANTU_DEBUG_IN();
auto & dof_data = this->getDOFData(dof_id);
AKANTU_DEBUG_ASSERT(dof_data.support_type == _dst_nodal,
"This function applies only on Nodal dofs");
const auto & equation_number = this->getLocalEquationsNumbers(dof_id);
UInt nb_element;
UInt * filter_it = nullptr;
if (filter_elements != empty_filter) {
nb_element = filter_elements.size();
filter_it = filter_elements.storage();
} else {
if (dof_data.group_support != "__mesh__") {
const auto & group_elements =
this->mesh->getElementGroup(dof_data.group_support)
.getElements(type, ghost_type);
nb_element = group_elements.size();
filter_it = group_elements.storage();
} else {
nb_element = this->mesh->getNbElement(type, ghost_type);
}
}
AKANTU_DEBUG_ASSERT(elementary_mat.size() == nb_element,
"The vector elementary_mat("
<< elementary_mat.getID()
<< ") has not the good size.");
UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
UInt nb_degree_of_freedom = dof_data.dof->getNbComponent();
const Array<UInt> & connectivity =
this->mesh->getConnectivity(type, ghost_type);
auto conn_begin = connectivity.begin(nb_nodes_per_element);
auto conn_it = conn_begin;
auto size_mat = nb_nodes_per_element * nb_degree_of_freedom;
Vector<Int> element_eq_nb(nb_degree_of_freedom * nb_nodes_per_element);
auto el_mat_it = elementary_mat.begin(size_mat, size_mat);
for (UInt e = 0; e < nb_element; ++e, ++el_mat_it) {
if (filter_it)
conn_it = conn_begin + *filter_it;
this->extractElementEquationNumber(equation_number, *conn_it,
nb_degree_of_freedom, element_eq_nb);
std::transform(element_eq_nb.begin(), element_eq_nb.end(),
element_eq_nb.begin(), [&](auto && local) {
return this->localToGlobalEquationNumber(local);
});
if (filter_it)
++filter_it;
else
++conn_it;
A.addValues(element_eq_nb, element_eq_nb, *el_mat_it,
elemental_matrix_type);
}
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
template <typename Mat>
void DOFManager::assemblePreassembledMatrix_(Mat & A, const ID & dof_id_m,
const ID & dof_id_n,
const TermsToAssemble & terms) {
const auto & equation_number_m = this->getLocalEquationsNumbers(dof_id_m);
const auto & equation_number_n = this->getLocalEquationsNumbers(dof_id_n);
for (const auto & term : terms) {
auto gi = this->localToGlobalEquationNumber(equation_number_m(term.i()));
auto gj = this->localToGlobalEquationNumber(equation_number_n(term.j()));
A.add(gi, gj, term);
}
}
/* -------------------------------------------------------------------------- */
} // namespace akantu
#endif /* __AKANTU_DOF_MANAGER_INLINE_IMPL_CC__ */
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