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rAKA/src/synchronizer/dof_synchronizer.cc
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dof_synchronizer.cc
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/**
* @file dof_synchronizer.cc
*
* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Fri Jun 17 2011
* @date last modification: Wed Oct 21 2015
*
* @brief DOF synchronizing object implementation
*
* @section LICENSE
*
* Copyright (©) 2010-2012, 2014, 2015 EPFL (Ecole Polytechnique Fédérale de
* Lausanne) Laboratory (LSMS - Laboratoire de Simulation en Mécanique des
* Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "dof_synchronizer.hh"
#include "aka_iterators.hh"
#include "dof_manager_default.hh"
#include "mesh.hh"
#include "node_synchronizer.hh"
/* -------------------------------------------------------------------------- */
#include <algorithm>
/* -------------------------------------------------------------------------- */
namespace akantu {
/* -------------------------------------------------------------------------- */
/**
* A DOFSynchronizer needs a mesh and the number of degrees of freedom
* per node to be created. In the constructor computes the local and global dof
* number for each dof. The member
* proc_informations (std vector) is resized with the number of mpi
* processes. Each entry in the vector is a PerProcInformations object
* that contains the interactions of the current mpi process (prank) with the
* mpi process corresponding to the position of that entry. Every
* ProcInformations object contains one array with the dofs that have
* to be sent to prank and a second one with dofs that willl be received form
* prank.
* This information is needed for the asychronous communications. The
* constructor sets up this information.
*/
DOFSynchronizer::DOFSynchronizer(DOFManagerDefault & dof_manager, const ID & id,
MemoryID memory_id,
const Communicator & comm)
: SynchronizerImpl<UInt>(id, memory_id, comm), root(0),
dof_manager(dof_manager), root_dofs(0, 1, "dofs-to-receive-from-master"),
dof_changed(true) {
std::vector<ID> dof_ids = dof_manager.getDOFIDs();
// Transfers nodes to global equation numbers in new schemes
for (const ID & dof_id : dof_ids) {
registerDOFs(dof_id);
}
this->initScatterGatherCommunicationScheme();
}
/* -------------------------------------------------------------------------- */
DOFSynchronizer::~DOFSynchronizer() = default;
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::registerDOFs(const ID & dof_id) {
if (this->nb_proc == 1)
return;
if (dof_manager.getSupportType(dof_id) != _dst_nodal)
return;
using const_scheme_iterator = Communications<UInt>::const_scheme_iterator;
const auto equation_numbers = dof_manager.getLocalEquationNumbers(dof_id);
const auto & associated_nodes = dof_manager.getDOFsAssociatedNodes(dof_id);
const auto & node_synchronizer = dof_manager.getMesh().getNodeSynchronizer();
const auto & node_communications = node_synchronizer.getCommunications();
auto transcode_node_to_global_dof_scheme =
[this, &associated_nodes,
&equation_numbers](const_scheme_iterator it, const_scheme_iterator end,
const CommunicationSendRecv & sr) -> void {
for (; it != end; ++it) {
auto & scheme = communications.createScheme(it->first, sr);
const auto & node_scheme = it->second;
for (auto & node : node_scheme) {
auto an_begin = associated_nodes.begin();
auto an_it = an_begin;
auto an_end = associated_nodes.end();
std::vector<UInt> global_dofs_per_node;
while ((an_it = std::find(an_it, an_end, node)) != an_end) {
UInt pos = an_it - an_begin;
UInt local_eq_num = equation_numbers(pos);
UInt global_eq_num =
dof_manager.localToGlobalEquationNumber(local_eq_num);
global_dofs_per_node.push_back(global_eq_num);
++an_it;
}
std::sort(global_dofs_per_node.begin(), global_dofs_per_node.end());
std::transform(global_dofs_per_node.begin(), global_dofs_per_node.end(),
global_dofs_per_node.begin(), [this](UInt g) -> UInt {
UInt l = dof_manager.globalToLocalEquationNumber(g);
return l;
});
for (auto & leqnum : global_dofs_per_node) {
scheme.push_back(leqnum);
}
}
}
};
for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
++sr_it) {
auto ncs_it = node_communications.begin_scheme(*sr_it);
auto ncs_end = node_communications.end_scheme(*sr_it);
transcode_node_to_global_dof_scheme(ncs_it, ncs_end, *sr_it);
}
dof_changed = true;
}
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::initScatterGatherCommunicationScheme() {
AKANTU_DEBUG_IN();
if (this->nb_proc == 1) {
dof_changed = false;
AKANTU_DEBUG_OUT();
return;
}
UInt nb_dofs = dof_manager.getLocalSystemSize();
this->root_dofs.clear();
this->master_receive_dofs.clear();
Array<UInt> dofs_to_send;
for (UInt n = 0; n < nb_dofs; ++n) {
if (dof_manager.isLocalOrMasterDOF(n)) {
auto & receive_per_proc = master_receive_dofs[this->root];
UInt global_dof = dof_manager.localToGlobalEquationNumber(n);
root_dofs.push_back(n);
receive_per_proc.push_back(global_dof);
dofs_to_send.push_back(global_dof);
}
}
if (this->rank == UInt(this->root)) {
Array<UInt> nb_dof_per_proc(this->nb_proc);
communicator.gather(dofs_to_send.size(), nb_dof_per_proc);
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < nb_proc; ++p) {
if (p == UInt(this->root))
continue;
auto & receive_per_proc = master_receive_dofs[p];
receive_per_proc.resize(nb_dof_per_proc(p));
if (nb_dof_per_proc(p) != 0)
requests.push_back(communicator.asyncReceive(
receive_per_proc, p,
Tag::genTag(p, 0, Tag::_GATHER_INITIALIZATION, this->hash_id)));
}
communicator.waitAll(requests);
communicator.freeCommunicationRequest(requests);
} else {
communicator.gather(dofs_to_send.size(), this->root);
AKANTU_DEBUG(dblDebug, "I have " << nb_dofs << " dofs ("
<< dofs_to_send.size()
<< " to send to master proc");
if (dofs_to_send.size() != 0)
communicator.send(dofs_to_send, this->root,
Tag::genTag(this->rank, 0, Tag::_GATHER_INITIALIZATION,
this->hash_id));
}
dof_changed = false;
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
bool DOFSynchronizer::hasChanged() {
communicator.allReduce(dof_changed, SynchronizerOperation::_lor);
return dof_changed;
}
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::onNodesAdded(const Array<UInt> & nodes_list) {
auto dof_ids = dof_manager.getDOFIDs();
const auto & node_synchronizer = dof_manager.getMesh().getNodeSynchronizer();
const auto & node_communications = node_synchronizer.getCommunications();
std::set<UInt> relevant_nodes;
std::map<UInt, std::vector<UInt>> nodes_per_proc[2];
for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
++sr_it) {
auto sit = node_communications.begin_scheme(*sr_it);
auto send = node_communications.end_scheme(*sr_it);
for (; sit != send; ++sit) {
auto proc = sit->first;
const auto & scheme = sit->second;
for (auto node : nodes_list) {
if (scheme.find(node) == UInt(-1))
continue;
relevant_nodes.insert(node);
nodes_per_proc[*sr_it][proc].push_back(node);
}
}
}
std::map<UInt, std::vector<UInt>> dofs_per_proc[2];
for (auto & dof_id : dof_ids) {
const auto & associated_nodes = dof_manager.getDOFsAssociatedNodes(dof_id);
const auto & local_equation_numbers =
dof_manager.getEquationsNumbers(dof_id);
for (auto tuple : zip(associated_nodes, local_equation_numbers)) {
UInt assoc_node;
UInt local_eq_num;
std::tie(assoc_node, local_eq_num) = tuple;
for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
++sr_it) {
for (auto & pair : nodes_per_proc[*sr_it]) {
if (std::find(pair.second.end(), pair.second.end(), assoc_node) !=
pair.second.end()) {
dofs_per_proc[*sr_it][pair.first].push_back(local_eq_num);
}
}
}
}
}
for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
++sr_it) {
for (auto & pair : dofs_per_proc[*sr_it]) {
std::sort(pair.second.begin(), pair.second.end(),
[this] (UInt la, UInt lb) -> bool {
UInt ga = dof_manager.localToGlobalEquationNumber(la);
UInt gb = dof_manager.localToGlobalEquationNumber(lb);
return ga < gb;
});
auto & scheme = communications.getScheme(pair.first, *sr_it);
for(auto leq : pair.second) {
scheme.push_back(leq);
}
}
}
dof_changed = true;
}
/* -------------------------------------------------------------------------- */
} // namespace akantu
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