Homec4science
Diffusion akantu (bugfixes/flatten-internal-that-are-missing) Browse

rAKA/src/geometry/mesh_sphere_intersector_tmpl.hh
5fd76a0201cdbugfixes/flatten…

Last Change
Raw File

mesh_sphere_intersector_tmpl.hh
View Options

/**
* @file mesh_sphere_intersector_tmpl.hh
*
* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @author Lucas Frerot <lucas.frerot@epfl.ch>
* @author Clement Roux <clement.roux@epfl.ch>
* @author Marco Vocialta <marco.vocialta@epfl.ch>
*
* @date creation: Tue Jun 23 2015
* @date last modification: Thu Jan 14 2016
*
* @brief Computation of mesh intersection with spheres
*
* @section LICENSE
*
* Copyright (©) 2015 EPFL (Ecole Polytechnique Fédérale de Lausanne) Laboratory
* (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#ifndef __AKANTU_MESH_SPHERE_INTERSECTOR_TMPL_HH__
#define __AKANTU_MESH_SPHERE_INTERSECTOR_TMPL_HH__
#include "aka_common.hh"
#include "mesh_geom_common.hh"
#include "tree_type_helper.hh"
#include "mesh_sphere_intersector.hh"
namespace akantu {
template<UInt dim, ElementType type>
MeshSphereIntersector<dim, type>::MeshSphereIntersector(Mesh & mesh):
parent_type(mesh),
tol_intersection_on_node(1e-10)
{
#if defined(AKANTU_IGFEM)
if( (type == _triangle_3) || (type == _igfem_triangle_4) || (type == _igfem_triangle_5) ){
const_cast<UInt &>(this->nb_seg_by_el) = 3;
} else {
AKANTU_DEBUG_ERROR("Not ready for mesh type " << type);
}
#else
if( (type != _triangle_3) )
AKANTU_DEBUG_ERROR("Not ready for mesh type " << type);
#endif
// initialize the intersection pointsss array with the spatial dimension
this->intersection_points = new Array<Real>(0,dim);
// A maximum is set to the number of intersection nodes per element to limit the size of new_node_per_elem: 2 in 2D and 4 in 3D
this->new_node_per_elem = new Array<UInt>(0, 1 + 4 * (dim-1));
}
template<UInt dim, ElementType type>
MeshSphereIntersector<dim, type>::~MeshSphereIntersector() {
delete this->new_node_per_elem;
delete this->intersection_points;
}
template<UInt dim, ElementType type>
void MeshSphereIntersector<dim, type>::constructData(GhostType ghost_type) {
this->new_node_per_elem->resize(this->mesh.getNbElement(type, ghost_type));
this->new_node_per_elem->clear();
MeshGeomIntersector<dim, type, Line_arc<SK>, SK::Sphere_3, SK>::constructData(ghost_type);
}
template<UInt dim, ElementType type>
void MeshSphereIntersector<dim, type>:: computeMeshQueryIntersectionPoint(const SK::Sphere_3 & query,
UInt nb_old_nodes) {
/// function to replace computeIntersectionQuery in a more generic geometry module version
// The newNodeEvent is not send from this method who only compute the intersection points
AKANTU_DEBUG_IN();
Array<Real> & nodes = this->mesh.getNodes();
UInt nb_node = nodes.size() + this->intersection_points->size();
// Tolerance for proximity checks should be defined by user
Real global_tolerance = Math::getTolerance();
Math::setTolerance(tol_intersection_on_node);
typedef boost::variant<pair_type> sk_inter_res;
TreeTypeHelper<Line_arc<cgal::Spherical>, cgal::Spherical>::const_iterator
it = this->factory.getPrimitiveList().begin(),
end= this->factory.getPrimitiveList().end();
for (; it != end ; ++it) { // loop on the primitives (segments)
std::list<sk_inter_res> s_results;
CGAL::intersection(*it, query, std::back_inserter(s_results));
if (s_results.size() == 1) { // just one point
if (pair_type * pair = boost::get<pair_type>(&s_results.front())) {
if (pair->second == 1) { // not a point tangent to the sphere
// the intersection point written as a vector
Vector<Real> new_node(dim, 0.0);
cgal::Cartesian::Point_3 point(CGAL::to_double(pair->first.x()),
CGAL::to_double(pair->first.y()),
CGAL::to_double(pair->first.z()));
for (UInt i = 0 ; i < dim ; i++) {
new_node(i) = point[i];
}
/// boolean to decide wheter intersection point is on a standard node of the mesh or not
bool is_on_mesh = false;
/// boolean to decide if this intersection point has been already computed for a neighbor element
bool is_new = true;
/// check if intersection point has already been computed
UInt n = nb_old_nodes;
// check if we already compute this intersection and add it as a node for a neighboor element of another type
Array<Real>::vector_iterator existing_node = nodes.begin(dim);
for (; n < nodes.size() ; ++n) {// loop on the nodes from nb_old_nodes
if (Math::are_vector_equal(dim, new_node.storage(), existing_node[n].storage())) {
is_new = false;
break;
}
}
if(is_new){
Array<Real>::vector_iterator intersection_points_it = this->intersection_points->begin(dim);
Array<Real>::vector_iterator intersection_points_end = this->intersection_points->end(dim);
for (; intersection_points_it != intersection_points_end ; ++intersection_points_it, ++n) {
if (Math::are_vector_equal(dim, new_node.storage(), intersection_points_it->storage())) {
is_new = false;
break;
}
}
}
// get the initial and final points of the primitive (segment) and write them as vectors
cgal::Cartesian::Point_3 source_cgal(CGAL::to_double(it->source().x()),
CGAL::to_double(it->source().y()),
CGAL::to_double(it->source().z()));
cgal::Cartesian::Point_3 target_cgal(CGAL::to_double(it->target().x()),
CGAL::to_double(it->target().y()),
CGAL::to_double(it->target().z()));
Vector<Real> source(dim), target(dim);
for (UInt i = 0 ; i < dim ; i++) {
source(i) = source_cgal[i];
target(i) = target_cgal[i];
}
// Check if we are close from a node of the primitive (segment)
if (Math::are_vector_equal(dim, source.storage(), new_node.storage()) ||
Math::are_vector_equal(dim, target.storage(), new_node.storage())) {
is_on_mesh = true;
is_new = false;
}
if (is_new) {// if the intersection point is a new one add it to the list
this->intersection_points->push_back(new_node);
nb_node++;
}
// deduce the element id
UInt element_id = it->id();
// fill the new_node_per_elem array
if (!is_on_mesh) { // if the node is not on a mesh node
UInt & nb_new_nodes_per_el = (*this->new_node_per_elem)(element_id, 0);
nb_new_nodes_per_el += 1;
AKANTU_DEBUG_ASSERT(2 * nb_new_nodes_per_el < this->new_node_per_elem->getNbComponent(),
"You might have to interface crossing the same material");
(*this->new_node_per_elem)(element_id, (2 * nb_new_nodes_per_el) - 1) = n;
(*this->new_node_per_elem)(element_id, 2 * nb_new_nodes_per_el) = it->segId();
}
}
}
}
}
Math::setTolerance(global_tolerance);
AKANTU_DEBUG_OUT();
}
} // akantu
#endif // __AKANTU_MESH_SPHERE_INTERSECTOR_TMPL_HH__
c4science · Help