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conf.py
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# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file does only contain a selection of the most common options. For a
# full list see the documentation:
# http://www.sphinx-doc.org/en/master/config
# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import shutil
import jinja2
# import git
# import re
import subprocess
# -- General configuration ---------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'
# Number figures
numfig = True
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
"sphinx.ext.autodoc",
"sphinx.ext.intersphinx",
"sphinx.ext.coverage",
"sphinx.ext.mathjax",
"sphinx.ext.ifconfig",
"sphinx.ext.viewcode",
"sphinxcontrib.bibtex",
"breathe",
]
read_the_docs_build = os.environ.get("READTHEDOCS", None) == "True"
if read_the_docs_build:
akantu_path = "."
akantu_source_path = "../../"
else:
akantu_path = "@CMAKE_CURRENT_BINARY_DIR@"
akantu_source_path = "@CMAKE_SOURCE_DIR@"
# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]
# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ".rst"
# The master toctree document.
master_doc = "index"
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = [
"CMakeLists.txt",
"manual/appendix/elements.rst",
"manual/appendix/material-parameters.rst",
"manual/constitutive-laws.rst",
"manual/new-constitutive-laws.rst",
]
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"
primary_domain = "cpp"
highlight_language = "cpp"
bibtex_bibfiles = ["manual/manual-bibliography.bib"]
# -- Project information -----------------------------------------------------
project = "Akantu"
copyright = (
"2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)"
+ " Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)"
)
author = "Nicolas Richart"
# try:
# tag_prefix = 'v'
# git_repo = git.Repo(akantu_source_path)
# git_describe = git_repo.git.describe('--tags', '--dirty', '--always',
# '--long',
# '--match', '{}*'.format(tag_prefix))
# print("GIT Describe: {}".format(git_describe))
# # git describe to PEP404 version
# describe_matches = re.search(
# (r'^{}(?P<version>.+?)' +
# r'(?:-(?P<distance>\d+)-g(?P<sha>[0-9a-f]+)' +
# r'(?:-(?P<dirty>dirty))?)?$').format(tag_prefix),
# git_describe)
# if describe_matches:
# describe_matches = describe_matches.groupdict()
# release = describe_matches['version']
# if describe_matches['distance']:
# release += '.' if '+' in release else '+'
# release += '{distance}.{sha}'.format(**describe_matches)
# if describe_matches['dirty']:
# release += '.dirty'
# else:
# count = git_repo.git.rev_list('HEAD', '--count')
# describe_matches = re.search(
# (r'^(?P<sha>[0-9a-f]+)' +
# r'(?:-(?P<dirty>dirty))?$').format(tag_prefix),
# git_describe).groupdict()
# release = '{}.{}+{}'.format(file_release, count,
# describe_matches['sha'])
# except git.InvalidGitRepositoryError:
# with open(os.path.join(akantu_source_path, 'VERSION'), 'r') as fh:
# version_file = fh.readlines()
# file_release = version_file[0].strip()
# release = file_release
# print("Release: {} - Version: {}".format(release, version))
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
if read_the_docs_build:
html_theme = "default"
else:
html_theme = "sphinx_rtd_theme"
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]
html_logo = "_static/logo_only_akantu.svg"
# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# The default sidebars (for documents that don't match any pattern) are
# defined by theme itself. Builtin themes are using these templates by
# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
# 'searchbox.html']``.
#
# html_sidebars = {}
html_sidebars = {
"**": [
"relations.html", # needs 'show_related': True theme option to display
"searchbox.html",
]
}
math_eqref_format = "Eq. {number}"
# MathJax configuration
# if not read_the_docs_build:
mathjax2_config = {
"extensions": ["tex2jax.js", "siunitx.js"],
"TeX": {
"Macros": {
"st": [r"\mathrm{#1}", 1],
"mat": [r"\mathbf{#1}", 1],
"half": [r"\frac{1}{2}", 0],
},
"extensions": ["AMSmath.js", "AMSsymbols.js", "sinuitx.js"],
},
}
#for old versions
mathjax_config = mathjax2_config
mathjax3_config = {
"tex": {
"macros": {
"st": [r"\mathrm{#1}", 1],
"mat": [r"\mathbf{#1}", 1],
"half": [r"\frac{1}{2}", 0],
},
"packages": ["base", "ams"],
},
"loader": {"load": ["[tex]/ams"]},
}
# -- Options for HTMLHelp output ---------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename = "Akantudoc"
# -- Options for LaTeX output ------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#
"preamble": r"""\usepackage{amsmath}""",
# Latex figure (float) alignment
#
# 'figure_align': 'htbp',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, "Akantu.tex", "Akantu Documentation", "Nicolas Richart", "manual"),
]
# -- Options for manual page output ------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "akantu", "Akantu Documentation", [author], 1)]
# -- Options for Texinfo output ----------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(
master_doc,
"Akantu",
"Akantu Documentation",
author,
"Akantu",
"One line description of project.",
"Miscellaneous",
),
]
# -- Options for Epub output -------------------------------------------------
# Bibliographic Dublin Core info.
epub_title = project
epub_author = author
epub_publisher = author
epub_copyright = copyright
# The unique identifier of the text. This can be a ISBN number
# or the project homepage.
#
epub_identifier = ""
# A unique identification for the text.
#
# epub_uid = ''
# A list of files that should not be packed into the epub file.
epub_exclude_files = ["search.html"]
# -- Extension configuration -------------------------------------------------
j2_args = {}
if read_the_docs_build:
j2_template_path = "."
else:
j2_template_path = "@CMAKE_CURRENT_SOURCE_DIR@"
os.makedirs(os.path.join(akantu_path, "_static"), exist_ok=True)
shutil.copyfile(
os.path.join("@CMAKE_CURRENT_SOURCE_DIR@", html_logo),
os.path.join(akantu_path, html_logo),
)
j2_args = {
"akantu_source_path": akantu_source_path,
#'akantu_version': version.replace('v', ''),
}
print(akantu_path)
j2_env = jinja2.Environment(
loader=jinja2.FileSystemLoader(j2_template_path), undefined=jinja2.DebugUndefined
)
j2_template = j2_env.get_template("akantu.dox.j2")
with open(os.path.join(akantu_path, "akantu.dox"), "w") as fh:
fh.write(j2_template.render(j2_args))
subprocess.run(["doxygen", "akantu.dox"], cwd=akantu_path)
# print("akantu_path = '{}'".format(akantu_path))
breathe_projects = {"Akantu": os.path.join(akantu_path, "xml")}
breathe_default_project = "Akantu"
breathe_default_members = ("members", "undoc-members")
breathe_implementation_filename_extensions = [".c", ".cc", ".cpp"]
breathe_show_enumvalue_initializer = True
breathe_debug_trace_directives = True
# -- Options for intersphinx extension ---------------------------------------
intersphinx_mapping = {
"numpy": ("https://docs.scipy.org/doc/numpy/", None),
"scipy": ("https://docs.scipy.org/doc/scipy/reference", None),
}
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