Homec4science
Diffusion akantu (bugfixes/python_interface_energy_computations) Browse

rAKA/src/io/dumper/dumper_nodal_field.hh
246ddc4b7d86bugfixes/python_interfa…

Last Change
Raw File

dumper_nodal_field.hh
View Options

/**
* @file dumper_nodal_field.hh
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Fri Oct 26 2012
* @date last modification: Tue Jan 06 2015
*
* @brief Description of nodal fields
*
* @section LICENSE
*
* Copyright (©) 2010-2012, 2014, 2015 EPFL (Ecole Polytechnique Fédérale de
* Lausanne) Laboratory (LSMS - Laboratoire de Simulation en Mécanique des
* Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef __AKANTU_DUMPER_NODAL_FIELD_HH__
#define __AKANTU_DUMPER_NODAL_FIELD_HH__
#include "dumper_field.hh"
#include <io_helper.hh>
/* -------------------------------------------------------------------------- */
namespace akantu {
__BEGIN_AKANTU_DUMPER__
// This represents a iohelper compatible field
template <typename T, bool filtered = false, class Container = Array<T>,
class Filter = Array<UInt>>
class NodalField;
/* -------------------------------------------------------------------------- */
template <typename T, class Container, class Filter>
class NodalField<T, false, Container, Filter> : public dumper::Field {
public:
/* ------------------------------------------------------------------------ */
/* Typedefs */
/* ------------------------------------------------------------------------ */
/// associated iterator with any nodal field (non filetered)
class iterator : public iohelper::iterator<T, iterator, Vector<T>> {
public:
iterator(T * vect, UInt offset, UInt n, UInt stride,
__attribute__((unused)) const UInt * filter = nullptr)
:
internal_it(vect),
offset(offset), n(n), stride(stride) {}
bool operator!=(const iterator & it) const override {
return internal_it != it.internal_it;
}
iterator & operator++() override {
internal_it += offset;
return *this;
};
Vector<T> operator*() override {
return Vector<T>(internal_it + stride, n);
};
private:
T * internal_it;
UInt offset, n, stride;
};
/* ------------------------------------------------------------------------ */
/* Constructors/Destructors */
/* ------------------------------------------------------------------------ */
NodalField(const Container & field, UInt n = 0, UInt stride = 0,
__attribute__((unused)) const Filter * filter = nullptr)
:
field(field),
n(n), stride(stride), padding(0) {
AKANTU_DEBUG_ASSERT(filter == nullptr,
"Filter passed to unfiltered NodalField!");
if (n == 0) {
this->n = field.getNbComponent() - stride;
}
}
/* ------------------------------------------------------------------------ */
/* Methods */
/* ------------------------------------------------------------------------ */
void registerToDumper(const std::string & id,
iohelper::Dumper & dumper) override {
dumper.addNodeDataField(id, *this);
}
inline iterator begin() {
return iterator(field.storage(), field.getNbComponent(), n, stride);
}
inline iterator end() {
return iterator(field.storage() + field.getNbComponent() * field.size(),
field.getNbComponent(), n, stride);
}
bool isHomogeneous() override { return true; }
void checkHomogeneity() override { this->homogeneous = true; }
virtual UInt getDim() {
if (this->padding)
return this->padding;
else
return n;
}
void setPadding(UInt padding) { this->padding = padding; }
UInt size() { return field.size(); }
iohelper::DataType getDataType() { return iohelper::getDataType<T>(); }
/* ------------------------------------------------------------------------ */
/* Class Members */
/* ------------------------------------------------------------------------ */
private:
const Container & field;
UInt n, stride;
UInt padding;
};
/* -------------------------------------------------------------------------- */
template <typename T, class Container, class Filter>
class NodalField<T, true, Container, Filter> : public dumper::Field {
/* ------------------------------------------------------------------------ */
/* Typedefs */
/* ------------------------------------------------------------------------ */
public:
class iterator : public iohelper::iterator<T, iterator, Vector<T>> {
public:
iterator(T * const vect, UInt _offset, UInt _n, UInt _stride,
const UInt * filter)
:
internal_it(vect),
offset(_offset), n(_n), stride(_stride), filter(filter) {}
bool operator!=(const iterator & it) const override {
return filter != it.filter;
}
iterator & operator++() override {
++filter;
return *this;
}
Vector<T> operator*() override {
return Vector<T>(internal_it + *(filter)*offset + stride, n);
}
private:
T * const internal_it;
UInt offset, n, stride;
const UInt * filter;
};
/* ------------------------------------------------------------------------ */
/* Constructors/Destructors */
/* ------------------------------------------------------------------------ */
NodalField(const Container & _field, UInt _n = 0, UInt _stride = 0,
const Filter * filter = NULL)
: field(_field), n(_n), stride(_stride), filter(filter), padding(0) {
AKANTU_DEBUG_ASSERT(this->filter != nullptr,
"No filter passed to filtered NodalField!");
AKANTU_DEBUG_ASSERT(this->filter->getNbComponent() == 1,
"Multi-component filter given to NodalField ("
<< this->filter->getNbComponent()
<< " components detected, sould be 1");
if (n == 0) {
this->n = field.getNbComponent() - stride;
}
}
/* ------------------------------------------------------------------------ */
/* Methods */
/* ------------------------------------------------------------------------ */
void registerToDumper(const std::string & id,
iohelper::Dumper & dumper) override {
dumper.addNodeDataField(id, *this);
}
inline iterator begin() {
return iterator(field.storage(), field.getNbComponent(), n, stride,
filter->storage());
}
inline iterator end() {
return iterator(field.storage(), field.getNbComponent(), n, stride,
filter->storage() + filter->size());
}
bool isHomogeneous() override { return true; }
void checkHomogeneity() override { this->homogeneous = true; }
virtual UInt getDim() {
if (this->padding)
return this->padding;
else
return n;
}
void setPadding(UInt padding) { this->padding = padding; }
UInt size() { return filter->size(); }
iohelper::DataType getDataType() { return iohelper::getDataType<T>(); }
/* ------------------------------------------------------------------------ */
/* Class Members */
/* ------------------------------------------------------------------------ */
private:
const Container & field;
UInt n, stride;
const Filter * filter;
UInt padding;
};
__END_AKANTU_DUMPER__
} // akantu
/* -------------------------------------------------------------------------- */
#endif /* __AKANTU_DUMPER_NODAL_FIELD_HH__ */
c4science · Help