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core.cmake
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#===============================================================================
# @file core.cmake
#
# @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
# @author Nicolas Richart <nicolas.richart@epfl.ch>
#
# @date creation: Mon Nov 21 2011
# @date last modification: Mon Jan 18 2016
#
# @brief package description for core
#
# @section LICENSE
#
# Copyright (©) 2010-2012, 2014, 2015 EPFL (Ecole Polytechnique Fédérale de
# Lausanne) Laboratory (LSMS - Laboratoire de Simulation en Mécanique des
# Solides)
#
# Akantu is free software: you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option) any
# later version.
#
# Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with Akantu. If not, see <http://www.gnu.org/licenses/>.
#
#===============================================================================
package_declare(core NOT_OPTIONAL
DESCRIPTION "core package for Akantu"
FEATURES_PUBLIC cxx_strong_enums cxx_defaulted_functions cxx_deleted_functions
FEATURES_PRIVATE cxx_auto_type cxx_lambdas cxx_nullptr
cxx_delegated_constructors cxx_range_for
)
package_declare_sources(core
common/aka_array.cc
common/aka_array.hh
common/aka_array_tmpl.hh
common/aka_blas_lapack.hh
common/aka_circular_array.hh
common/aka_circular_array_inline_impl.cc
common/aka_common.cc
common/aka_common.hh
common/aka_common_inline_impl.cc
common/aka_csr.hh
common/aka_element_classes_info_inline_impl.cc
common/aka_error.cc
common/aka_error.hh
common/aka_event_handler_manager.hh
common/aka_extern.cc
common/aka_fwd.hh
common/aka_grid_dynamic.hh
common/aka_math.cc
common/aka_math.hh
common/aka_math_tmpl.hh
common/aka_memory.cc
common/aka_memory.hh
common/aka_memory_inline_impl.cc
common/aka_random_generator.hh
common/aka_safe_enum.hh
common/aka_static_memory.cc
common/aka_static_memory.hh
common/aka_static_memory_inline_impl.cc
common/aka_static_memory_tmpl.hh
common/aka_typelist.hh
common/aka_types.hh
common/aka_visitor.hh
common/aka_voigthelper.hh
common/aka_voigthelper_tmpl.hh
common/aka_voigthelper.cc
common/aka_warning.hh
common/aka_warning_restore.hh
fe_engine/element_class.cc
fe_engine/element_class.hh
fe_engine/element_class_tmpl.hh
fe_engine/element_classes/element_class_hexahedron_8_inline_impl.cc
fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
fe_engine/element_classes/element_class_point_1_inline_impl.cc
fe_engine/element_classes/element_class_quadrangle_4_inline_impl.cc
fe_engine/element_classes/element_class_quadrangle_8_inline_impl.cc
fe_engine/element_classes/element_class_segment_2_inline_impl.cc
fe_engine/element_classes/element_class_segment_3_inline_impl.cc
fe_engine/element_classes/element_class_tetrahedron_10_inline_impl.cc
fe_engine/element_classes/element_class_tetrahedron_4_inline_impl.cc
fe_engine/element_classes/element_class_triangle_3_inline_impl.cc
fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
fe_engine/fe_engine.cc
fe_engine/fe_engine.hh
fe_engine/fe_engine_inline_impl.cc
fe_engine/fe_engine_template.hh
fe_engine/fe_engine_template_tmpl.hh
fe_engine/geometrical_element.cc
fe_engine/gauss_integration.cc
fe_engine/gauss_integration_tmpl.hh
fe_engine/integrator.hh
fe_engine/integrator_gauss.hh
fe_engine/integrator_gauss_inline_impl.cc
fe_engine/interpolation_element.cc
fe_engine/interpolation_element_tmpl.hh
fe_engine/integration_point.hh
fe_engine/shape_functions.hh
fe_engine/shape_functions_inline_impl.cc
fe_engine/shape_lagrange.cc
fe_engine/shape_lagrange.hh
fe_engine/shape_lagrange_inline_impl.cc
fe_engine/shape_linked.cc
fe_engine/shape_linked.hh
fe_engine/shape_linked_inline_impl.cc
fe_engine/element.hh
io/dumper/dumpable.hh
io/dumper/dumpable.cc
io/dumper/dumpable_dummy.hh
io/dumper/dumpable_inline_impl.hh
io/dumper/dumper_field.hh
io/dumper/dumper_material_padders.hh
io/dumper/dumper_filtered_connectivity.hh
io/dumper/dumper_element_partition.hh
io/mesh_io.cc
io/mesh_io.hh
io/mesh_io/mesh_io_abaqus.cc
io/mesh_io/mesh_io_abaqus.hh
io/mesh_io/mesh_io_diana.cc
io/mesh_io/mesh_io_diana.hh
io/mesh_io/mesh_io_msh.cc
io/mesh_io/mesh_io_msh.hh
io/model_io.cc
io/model_io.hh
io/parser/algebraic_parser.hh
io/parser/input_file_parser.hh
io/parser/parsable.cc
io/parser/parsable.hh
io/parser/parsable_tmpl.hh
io/parser/parser.cc
io/parser/parser_real.cc
io/parser/parser_random.cc
io/parser/parser_types.cc
io/parser/parser_input_files.cc
io/parser/parser.hh
io/parser/parser_tmpl.hh
io/parser/parser_grammar_tmpl.hh
io/parser/cppargparse/cppargparse.hh
io/parser/cppargparse/cppargparse.cc
io/parser/cppargparse/cppargparse_tmpl.hh
io/parser/parameter_registry.cc
io/parser/parameter_registry.hh
io/parser/parameter_registry_tmpl.hh
mesh/element_group.cc
mesh/element_group.hh
mesh/element_group_inline_impl.cc
mesh/element_type_map.hh
mesh/element_type_map_tmpl.hh
mesh/element_type_map_filter.hh
mesh/group_manager.cc
mesh/group_manager.hh
mesh/group_manager_inline_impl.cc
mesh/mesh.cc
mesh/mesh.hh
mesh/mesh_accessor.hh
mesh/mesh_accessor.cc
mesh/mesh_events.hh
mesh/mesh_filter.hh
mesh/mesh_data.cc
mesh/mesh_data.hh
mesh/mesh_data_tmpl.hh
mesh/mesh_inline_impl.cc
mesh/node_group.cc
mesh/node_group.hh
mesh/node_group_inline_impl.cc
mesh_utils/mesh_partition.cc
mesh_utils/mesh_partition.hh
mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
mesh_utils/mesh_partition/mesh_partition_scotch.hh
mesh_utils/mesh_utils_pbc.cc
mesh_utils/mesh_utils.cc
mesh_utils/mesh_utils.hh
mesh_utils/mesh_utils_distribution.cc
mesh_utils/mesh_utils_distribution.hh
mesh_utils/mesh_utils.hh
mesh_utils/mesh_utils_inline_impl.cc
mesh_utils/global_ids_updater.hh
mesh_utils/global_ids_updater.cc
mesh_utils/global_ids_updater_inline_impl.cc
model/boundary_condition.hh
model/boundary_condition_functor.hh
model/boundary_condition_functor_inline_impl.cc
model/boundary_condition_tmpl.hh
model/dof_manager.cc
model/dof_manager.hh
model/dof_manager_default.cc
model/dof_manager_default.hh
model/dof_manager_default_inline_impl.cc
model/dof_manager_inline_impl.cc
model/model_solver.cc
model/model_solver.hh
model/model_solver_tmpl.hh
model/non_linear_solver.cc
model/non_linear_solver.hh
model/non_linear_solver_default.hh
model/non_linear_solver_lumped.cc
model/non_linear_solver_lumped.hh
model/solver_callback.hh
model/solver_callback.cc
model/time_step_solver.hh
model/time_step_solvers/time_step_solver.cc
model/time_step_solvers/time_step_solver_default.cc
model/time_step_solvers/time_step_solver_default.hh
model/time_step_solvers/time_step_solver_default_explicit.hh
model/non_linear_solver_callback.hh
model/time_step_solvers/time_step_solver_default_solver_callback.hh
model/integration_scheme/generalized_trapezoidal.cc
model/integration_scheme/generalized_trapezoidal.hh
model/integration_scheme/integration_scheme.cc
model/integration_scheme/integration_scheme.hh
model/integration_scheme/integration_scheme_1st_order.cc
model/integration_scheme/integration_scheme_1st_order.hh
model/integration_scheme/integration_scheme_2nd_order.cc
model/integration_scheme/integration_scheme_2nd_order.hh
model/integration_scheme/newmark-beta.cc
model/integration_scheme/newmark-beta.hh
model/integration_scheme/pseudo_time.cc
model/integration_scheme/pseudo_time.hh
model/model.cc
model/model.hh
model/model_inline_impl.cc
model/solid_mechanics/material.cc
model/solid_mechanics/material.hh
model/solid_mechanics/material_inline_impl.cc
model/solid_mechanics/material_selector.hh
model/solid_mechanics/material_selector_tmpl.hh
model/solid_mechanics/materials/internal_field.hh
model/solid_mechanics/materials/internal_field_tmpl.hh
model/solid_mechanics/materials/random_internal_field.hh
model/solid_mechanics/materials/random_internal_field_tmpl.hh
model/solid_mechanics/solid_mechanics_model.cc
model/solid_mechanics/solid_mechanics_model.hh
model/solid_mechanics/solid_mechanics_model_inline_impl.cc
model/solid_mechanics/solid_mechanics_model_mass.cc
model/solid_mechanics/solid_mechanics_model_material.cc
model/solid_mechanics/solid_mechanics_model_tmpl.hh
model/solid_mechanics/solid_mechanics_model_event_handler.hh
model/solid_mechanics/materials/plane_stress_toolbox.hh
model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
model/solid_mechanics/materials/material_core_includes.hh
model/solid_mechanics/materials/material_elastic.cc
model/solid_mechanics/materials/material_elastic.hh
model/solid_mechanics/materials/material_elastic_inline_impl.cc
model/solid_mechanics/materials/material_thermal.cc
model/solid_mechanics/materials/material_thermal.hh
model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
model/solid_mechanics/materials/material_elastic_orthotropic.cc
model/solid_mechanics/materials/material_elastic_orthotropic.hh
model/solid_mechanics/materials/material_damage/material_damage.hh
model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
model/solid_mechanics/materials/material_damage/material_marigo.cc
model/solid_mechanics/materials/material_damage/material_marigo.hh
model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
model/solid_mechanics/materials/material_damage/material_mazars.cc
model/solid_mechanics/materials/material_damage/material_mazars.hh
model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
model/solid_mechanics/materials/material_finite_deformation/material_neohookean_inline_impl.cc
model/solid_mechanics/materials/material_plastic/material_plastic.cc
model/solid_mechanics/materials/material_plastic/material_plastic.hh
model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
model/common/neighborhood_base.hh
model/common/neighborhood_base.cc
model/common/neighborhood_base_inline_impl.cc
model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
solver/sparse_solver.cc
solver/sparse_solver.hh
solver/sparse_solver_inline_impl.cc
solver/sparse_matrix.cc
solver/sparse_matrix.hh
solver/sparse_matrix_inline_impl.cc
solver/sparse_matrix_aij.cc
solver/sparse_matrix_aij.hh
solver/sparse_matrix_aij_inline_impl.cc
synchronizer/communication_descriptor_tmpl.hh
synchronizer/communications_tmpl.hh
synchronizer/communication_buffer.hh
synchronizer/communication_buffer_inline_impl.cc
synchronizer/communication_descriptor.hh
synchronizer/communication_tag.hh
synchronizer/communications.hh
synchronizer/data_accessor.cc
synchronizer/data_accessor.hh
synchronizer/element_synchronizer.cc
synchronizer/element_synchronizer.hh
synchronizer/node_synchronizer.cc
synchronizer/node_synchronizer.hh
synchronizer/dof_synchronizer.cc
synchronizer/dof_synchronizer.hh
synchronizer/dof_synchronizer_inline_impl.cc
synchronizer/element_info_per_processor.cc
synchronizer/element_info_per_processor.hh
synchronizer/element_info_per_processor_tmpl.hh
synchronizer/filtered_synchronizer.cc
synchronizer/filtered_synchronizer.hh
synchronizer/grid_synchronizer.cc
synchronizer/grid_synchronizer.hh
synchronizer/master_element_info_per_processor.cc
synchronizer/node_info_per_processor.cc
synchronizer/node_info_per_processor.hh
synchronizer/real_static_communicator.hh
synchronizer/slave_element_info_per_processor.cc
synchronizer/static_communicator.cc
synchronizer/static_communicator.hh
synchronizer/static_communicator_dummy.hh
synchronizer/static_communicator_inline_impl.hh
synchronizer/synchronizer.cc
synchronizer/synchronizer.hh
synchronizer/synchronizer_impl.hh
synchronizer/synchronizer_impl_tmpl.hh
synchronizer/synchronizer_registry.cc
synchronizer/synchronizer_registry.hh
synchronizer/synchronizer_tmpl.hh
)
package_declare_elements(core
ELEMENT_TYPES
_point_1
_segment_2
_segment_3
_triangle_3
_triangle_6
_quadrangle_4
_quadrangle_8
_tetrahedron_4
_tetrahedron_10
_pentahedron_6
_pentahedron_15
_hexahedron_8
_hexahedron_20
KIND regular
GEOMETRICAL_TYPES
_gt_point
_gt_segment_2
_gt_segment_3
_gt_triangle_3
_gt_triangle_6
_gt_quadrangle_4
_gt_quadrangle_8
_gt_tetrahedron_4
_gt_tetrahedron_10
_gt_hexahedron_8
_gt_hexahedron_20
_gt_pentahedron_6
_gt_pentahedron_15
INTERPOLATION_TYPES
_itp_lagrange_point_1
_itp_lagrange_segment_2
_itp_lagrange_segment_3
_itp_lagrange_triangle_3
_itp_lagrange_triangle_6
_itp_lagrange_quadrangle_4
_itp_serendip_quadrangle_8
_itp_lagrange_tetrahedron_4
_itp_lagrange_tetrahedron_10
_itp_lagrange_hexahedron_8
_itp_serendip_hexahedron_20
_itp_lagrange_pentahedron_6
_itp_lagrange_pentahedron_15
GEOMETRICAL_SHAPES
_gst_point
_gst_triangle
_gst_square
_gst_prism
GAUSS_INTEGRATION_TYPES
_git_point
_git_segment
_git_triangle
_git_tetrahedron
_git_pentahedron
INTERPOLATION_KIND _itk_lagrangian
FE_ENGINE_LISTS
gradient_on_integration_points
interpolate_on_integration_points
interpolate
compute_normals_on_integration_points
inverse_map
contains
compute_shapes
compute_shapes_derivatives
get_shapes_derivatives
)
package_declare_material_infos(core
LIST AKANTU_CORE_MATERIAL_LIST
INCLUDE material_core_includes.hh
)
package_declare_documentation_files(core
manual.sty
manual.cls
manual.tex
manual-macros.sty
manual-titlepages.tex
manual-introduction.tex
manual-gettingstarted.tex
manual-io.tex
manual-feengine.tex
manual-solidmechanicsmodel.tex
manual-constitutive-laws.tex
manual-lumping.tex
manual-elements.tex
manual-appendix-elements.tex
manual-appendix-materials.tex
manual-appendix-packages.tex
manual-backmatter.tex
manual-bibliography.bib
manual-bibliographystyle.bst
figures/bc_and_ic_example.pdf
figures/boundary.pdf
figures/boundary.svg
figures/dirichlet.pdf
figures/dirichlet.svg
figures/doc_wheel.pdf
figures/doc_wheel.svg
figures/dynamic_analysis.png
figures/explicit_dynamic.pdf
figures/explicit_dynamic.svg
figures/static.pdf
figures/static.svg
figures/hooke_law.pdf
figures/hot-point-1.png
figures/hot-point-2.png
figures/implicit_dynamic.pdf
figures/implicit_dynamic.svg
figures/insertion.pdf
figures/interpolate.pdf
figures/interpolate.svg
figures/problemDomain.pdf_tex
figures/problemDomain.pdf
figures/static_analysis.png
figures/stress_strain_el.pdf
figures/tangent.pdf
figures/tangent.svg
figures/vectors.pdf
figures/vectors.svg
figures/stress_strain_neo.pdf
figures/visco_elastic_law.pdf
figures/isotropic_hardening_plasticity.pdf
figures/stress_strain_visco.pdf
figures/elements/hexahedron_8.pdf
figures/elements/hexahedron_8.svg
figures/elements/quadrangle_4.pdf
figures/elements/quadrangle_4.svg
figures/elements/quadrangle_8.pdf
figures/elements/quadrangle_8.svg
figures/elements/segment_2.pdf
figures/elements/segment_2.svg
figures/elements/segment_3.pdf
figures/elements/segment_3.svg
figures/elements/tetrahedron_10.pdf
figures/elements/tetrahedron_10.svg
figures/elements/tetrahedron_4.pdf
figures/elements/tetrahedron_4.svg
figures/elements/triangle_3.pdf
figures/elements/triangle_3.svg
figures/elements/triangle_6.pdf
figures/elements/triangle_6.svg
figures/elements/xtemp.pdf
)
package_declare_documentation(core
"This package is the core engine of \\akantu. It depends on:"
"\\begin{itemize}"
"\\item A C++ compiler (\\href{http://gcc.gnu.org/}{GCC} >= 4, or \\href{https://software.intel.com/en-us/intel-compilers}{Intel})."
"\\item The cross-platform, open-source \\href{http://www.cmake.org/}{CMake} build system."
"\\item The \\href{http://www.boost.org/}{Boost} C++ portable libraries."
"\\item The \\href{http://www.zlib.net/}{zlib} compression library."
"\\end{itemize}"
""
"Under Ubuntu (14.04 LTS) the installation can be performed using the commands:"
"\\begin{command}"
" > sudo apt-get install cmake libboost-dev zlib1g-dev g++"
"\\end{command}"
""
"Under Mac OS X the installation requires the following steps:"
"\\begin{itemize}"
"\\item Install Xcode"
"\\item Install the command line tools."
"\\item Install the MacPorts project which allows to automatically"
"download and install opensource packages."
"\\end{itemize}"
"Then the following commands should be typed in a terminal:"
"\\begin{command}"
" > sudo port install cmake gcc48 boost"
"\\end{command}"
)
find_program(READLINK_COMMAND readlink)
find_program(ADDR2LINE_COMMAND addr2line)
find_program(PATCH_COMMAND patch)
mark_as_advanced(READLINK_COMMAND)
mark_as_advanced(ADDR2LINE_COMMAND)
include(CheckFunctionExists)
check_function_exists(clock_gettime _clock_gettime)
include(CheckCXXSymbolExists)
check_cxx_symbol_exists(strdup cstring AKANTU_HAS_STRDUP)
if(NOT _clock_gettime)
set(AKANTU_USE_OBSOLETE_GETTIMEOFDAY ON CACHE INTERNAL "" FORCE)
else()
set(AKANTU_USE_OBSOLETE_GETTIMEOFDAY OFF CACHE INTERNAL "" FORCE)
endif()
package_declare_extra_files_to_package(core
SOURCES
common/aka_element_classes_info.hh.in
common/aka_config.hh.in
model/solid_mechanics/material_list.hh.in
)
if(CMAKE_CXX_COMPILER_ID STREQUAL "Clang" AND (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.9))
package_set_compile_flags(core CXX "-Wno-undefined-var-template")
endif()
if(DEFINED AKANTU_CXX11_FLAGS)
package_declare(core_cxx11 NOT_OPTIONAL
DESCRIPTION "C++ 11 additions for Akantu core"
COMPILE_FLAGS CXX "${AKANTU_CXX11_FLAGS}")
if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
if(CMAKE_CXX_COMPILER_VERSION VERSION_LESS "4.6")
set(AKANTU_CORE_CXX11 OFF CACHE BOOL "C++ 11 additions for Akantu core - not supported by the selected compiler" FORCE)
endif()
endif()
package_declare_documentation(core_cxx11
"This option activates some features of the C++11 standard. This is usable with GCC>=4.7 or Intel>=13.")
else()
if(CMAKE_VERSION VERSION_LESS 3.1)
message(FATAL_ERROR "Since version 3.0 Akantu requires at least c++11 capable compiler")
endif()
endif()
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