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test_cohesive_intrinsic_tetrahedron.cc
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			/**
			* @file test_cohesive_intrinsic_tetrahedron.cc
			*
			* @author Marco Vocialta <marco.vocialta@epfl.ch>
			*
			* @date creation: Tue Aug 27 2013
			* @date last modification: Fri Sep 19 2014
			*
			* @brief Test for cohesive elements
			*
			* @section LICENSE
			*
			* Copyright (©) 2014 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */
			#include <limits>
			#include <fstream>
			#include <iostream>

			/* -------------------------------------------------------------------------- */
			#include "solid_mechanics_model_cohesive.hh"
			#include "material_cohesive.hh"
			/* -------------------------------------------------------------------------- */

			using namespace akantu;

			void updateDisplacement(SolidMechanicsModelCohesive &,
			Array<UInt> &,
			ElementType,
			Vector<Real> &);

			bool checkTractions(SolidMechanicsModelCohesive & model,
			ElementType type,
			Vector<Real> & opening,
			Vector<Real> & theoretical_traction,
			Matrix<Real> & rotation);

			void findNodesToCheck(const Mesh & mesh,
			const Array<UInt> & elements,
			ElementType type,
			Array<UInt> & nodes_to_check);

			bool checkEquilibrium(const Array<Real> & residual);

			bool checkResidual(const Array<Real> & residual,
			const Vector<Real> & traction,
			const Array<UInt> & nodes_to_check,
			const Matrix<Real> & rotation);

			int main(int argc, char *argv[]) {
			initialize("material_tetrahedron.dat", argc, argv);

			// debug::setDebugLevel(dblDump);

			const UInt spatial_dimension = 3;
			const UInt max_steps = 60;
			const Real increment_constant = 0.01;
			Math::setTolerance(1.e-12);

			const ElementType type = _tetrahedron_10;

			Mesh mesh(spatial_dimension);
			mesh.read("tetrahedron.msh");

			SolidMechanicsModelCohesive model(mesh);

			/// model initialization
			model.initFull();

			model.limitInsertion(_x, -0.01, 0.01);
			model.insertIntrinsicElements();

			Array<bool> & boundary = model.getBlockedDOFs();
			boundary.set(true);

			UInt nb_element = mesh.getNbElement(type);

			model.updateResidual();

			model.setBaseName("intrinsic_tetrahedron");
			model.addDumpFieldVector("displacement");
			model.addDumpField("residual");
			model.dump();

			model.setBaseNameToDumper("cohesive elements", "cohesive_elements_tetrahedron");
			model.addDumpFieldVectorToDumper("cohesive elements", "displacement");
			model.addDumpFieldToDumper("cohesive elements", "damage");
			model.dump("cohesive elements");

			/// find elements to displace
			Array<UInt> elements;
			Real * bary = new Real[spatial_dimension];
			for (UInt el = 0; el < nb_element; ++el) {
			mesh.getBarycenter(el, type, bary);
			if (bary[0] > 0.01) elements.push_back(el);
			}
			delete[] bary;

			/// find nodes to check
			Array<UInt> nodes_to_check;
			findNodesToCheck(mesh, elements, type, nodes_to_check);

			/// rotate mesh
			Real angle = 1.;

			Matrix<Real> rotation(spatial_dimension, spatial_dimension);
			rotation.clear();
			rotation(0, 0) = std::cos(angle);
			rotation(0, 1) = std::sin(angle) * -1.;
			rotation(1, 0) = std::sin(angle);
			rotation(1, 1) = std::cos(angle);
			rotation(2, 2) = 1.;


			Vector<Real> increment_tmp(spatial_dimension);
			for (UInt dim = 0; dim < spatial_dimension; ++dim) {
			increment_tmp(dim) = (dim + 1) * increment_constant;
			}

			Vector<Real> increment(spatial_dimension);
			increment.mul<false>(rotation, increment_tmp);

			Array<Real> & position = mesh.getNodes();
			Array<Real> position_tmp(position);

			Array<Real>::iterator<Vector<Real> > position_it = position.begin(spatial_dimension);
			Array<Real>::iterator<Vector<Real> > position_end = position.end(spatial_dimension);
			Array<Real>::iterator<Vector<Real> > position_tmp_it
			= position_tmp.begin(spatial_dimension);

			for (; position_it != position_end; ++position_it, ++position_tmp_it)
			position_it->mul<false>(rotation, *position_tmp_it);

			model.dump();
			model.dump("cohesive elements");

			updateDisplacement(model, elements, type, increment);


			Real theoretical_Ed = 0;

			Vector<Real> opening(spatial_dimension);
			Vector<Real> traction(spatial_dimension);
			Vector<Real> opening_old(spatial_dimension);
			Vector<Real> traction_old(spatial_dimension);

			opening.clear();
			traction.clear();
			opening_old.clear();
			traction_old.clear();

			Vector<Real> Dt(spatial_dimension);
			Vector<Real> Do(spatial_dimension);

			const Array<Real> & residual = model.getResidual();

			/// Main loop
			for (UInt s = 1; s <= max_steps; ++s) {

			model.updateResidual();

			opening += increment_tmp;
			if (checkTractions(model, type, opening, traction, rotation) \|\|
			checkEquilibrium(residual) \|\|
			checkResidual(residual, traction, nodes_to_check, rotation)) {
			finalize();
			return EXIT_FAILURE;
			}

			/// compute energy
			Do = opening;
			Do -= opening_old;

			Dt = traction_old;
			Dt += traction;

			theoretical_Ed += .5 * Do.dot(Dt);

			opening_old = opening;
			traction_old = traction;


			updateDisplacement(model, elements, type, increment);

			if(s % 10 == 0) {
			std::cout << "passing step " << s << "/" << max_steps << std::endl;
			model.dump();
			model.dump("cohesive elements");
			}
			}

			model.dump();
			model.dump("cohesive elements");

			Real Ed = model.getEnergy("dissipated");
			theoretical_Ed *= 4.;

			std::cout << Ed << " " << theoretical_Ed << std::endl;

			if (!Math::are_float_equal(Ed, theoretical_Ed) \|\| std::isnan(Ed)) {
			std::cout << "The dissipated energy is incorrect" << std::endl;
			finalize();
			return EXIT_FAILURE;
			}

			finalize();

			std::cout << "OK: test_cohesive_intrinsic_tetrahedron was passed!" << std::endl;
			return EXIT_SUCCESS;
			}

			/* -------------------------------------------------------------------------- */

			void updateDisplacement(SolidMechanicsModelCohesive & model,
			Array<UInt> & elements,
			ElementType type,
			Vector<Real> & increment) {

			UInt spatial_dimension = model.getSpatialDimension();
			Mesh & mesh = model.getFEEngine().getMesh();
			UInt nb_element = elements.getSize();
			UInt nb_nodes = mesh.getNbNodes();
			UInt nb_nodes_per_element = mesh.getNbNodesPerElement(type);

			const Array<UInt> & connectivity = mesh.getConnectivity(type);
			Array<Real> & displacement = model.getDisplacement();
			Array<bool> update(nb_nodes);
			update.clear();

			for (UInt el = 0; el < nb_element; ++el) {
			for (UInt n = 0; n < nb_nodes_per_element; ++n) {
			UInt node = connectivity(elements(el), n);
			if (!update(node)) {
			Vector<Real> node_disp(displacement.storage() + node * spatial_dimension,
			spatial_dimension);
			node_disp += increment;
			update(node) = true;
			}
			}
			}
			}

			/* -------------------------------------------------------------------------- */

			bool checkTractions(SolidMechanicsModelCohesive & model,
			ElementType type,
			Vector<Real> & opening,
			Vector<Real> & theoretical_traction,
			Matrix<Real> & rotation) {
			UInt spatial_dimension = model.getSpatialDimension();

			const MaterialCohesive & mat_cohesive
			= dynamic_cast < const MaterialCohesive & > (model.getMaterial(1));

			Real sigma_c = mat_cohesive.getParam< RandomInternalField<Real, FacetInternalField> >("sigma_c");
			const Real beta = mat_cohesive.getParam<Real>("beta");
			const Real G_c = mat_cohesive.getParam<Real>("G_c");
			const Real delta_0 = mat_cohesive.getParam<Real>("delta_0");
			const Real kappa = mat_cohesive.getParam<Real>("kappa");
			Real delta_c = 2 * G_c / sigma_c;
			sigma_c *= delta_c / (delta_c - delta_0);

			ElementType type_facet = Mesh::getFacetType(type);
			ElementType type_cohesive = FEEngine::getCohesiveElementType(type_facet);

			const Array<Real> & traction = mat_cohesive.getTraction(type_cohesive);
			const Array<Real> & damage = mat_cohesive.getDamage(type_cohesive);

			UInt nb_quad_per_el
			= model.getFEEngine("CohesiveFEEngine").getNbQuadraturePoints(type_cohesive);
			UInt nb_element = model.getMesh().getNbElement(type_cohesive);
			UInt tot_nb_quad = nb_element * nb_quad_per_el;

			Vector<Real> normal_opening(spatial_dimension);
			normal_opening.clear();
			normal_opening(0) = opening(0);
			Real normal_opening_norm = normal_opening.norm();

			Vector<Real> tangential_opening(spatial_dimension);
			tangential_opening.clear();
			for (UInt dim = 1; dim < spatial_dimension; ++dim)
			tangential_opening(dim) = opening(dim);

			Real tangential_opening_norm = tangential_opening.norm();

			Real beta2_kappa2 = beta * beta/kappa/kappa;
			Real beta2_kappa = beta * beta/kappa;

			Real delta = std::sqrt(tangential_opening_norm * tangential_opening_norm
			* beta2_kappa2 +
			normal_opening_norm * normal_opening_norm);

			delta = std::max(delta, delta_0);

			Real theoretical_damage = std::min(delta / delta_c, 1.);

			if (Math::are_float_equal(theoretical_damage, 1.))
			theoretical_traction.clear();
			else {
			theoretical_traction = tangential_opening;
			theoretical_traction *= beta2_kappa;
			theoretical_traction += normal_opening;
			theoretical_traction = sigma_c / delta (1. - theoretical_damage);
			}

			// adjust damage
			theoretical_damage = std::max((delta - delta_0) / (delta_c - delta_0), 0.);
			theoretical_damage = std::min(theoretical_damage, 1.);

			Vector<Real> theoretical_traction_rotated(spatial_dimension);
			theoretical_traction_rotated.mul<false>(rotation, theoretical_traction);

			for (UInt q = 0; q < tot_nb_quad; ++q) {
			for (UInt dim = 0; dim < spatial_dimension; ++dim) {
			if (!Math::are_float_equal(theoretical_traction_rotated(dim),
			traction(q, dim))) {
			std::cout << "Tractions are incorrect" << std::endl;
			return 1;
			}
			}

			if (!Math::are_float_equal(theoretical_damage, damage(q))) {
			std::cout << "Damage is incorrect" << std::endl;
			return 1;
			}
			}

			return 0;
			}

			/* -------------------------------------------------------------------------- */

			void findNodesToCheck(const Mesh & mesh,
			const Array<UInt> & elements,
			ElementType type,
			Array<UInt> & nodes_to_check) {

			const Array<UInt> & connectivity = mesh.getConnectivity(type);
			const Array<Real> & position = mesh.getNodes();

			UInt nb_nodes = position.getSize();
			UInt nb_nodes_per_elem = connectivity.getNbComponent();

			Array<bool> checked_nodes(nb_nodes);
			checked_nodes.clear();

			for (UInt el = 0; el < elements.getSize(); ++el) {

			UInt element = elements(el);
			Vector<UInt> conn_el(connectivity.storage() + nb_nodes_per_elem * element,
			nb_nodes_per_elem);

			for (UInt n = 0; n < nb_nodes_per_elem; ++n) {
			UInt node = conn_el(n);
			if (Math::are_float_equal(position(node, 0), 0.)
			&& checked_nodes(node) == false) {
			checked_nodes(node) = true;
			nodes_to_check.push_back(node);
			}
			}
			}
			}

			/* -------------------------------------------------------------------------- */

			bool checkEquilibrium(const Array<Real> & residual) {

			UInt spatial_dimension = residual.getNbComponent();

			Vector<Real> residual_sum(spatial_dimension);
			residual_sum.clear();

			Array<Real>::const_iterator<Vector<Real> > res_it
			= residual.begin(spatial_dimension);
			Array<Real>::const_iterator<Vector<Real> > res_end
			= residual.end(spatial_dimension);

			for (; res_it != res_end; ++res_it)
			residual_sum += *res_it;

			for (UInt s = 0; s < spatial_dimension; ++s) {
			if (!Math::are_float_equal(residual_sum(s), 0.)) {
			std::cout << "System is not in equilibrium!" << std::endl;
			return 1;
			}
			}

			return 0;
			}

			/* -------------------------------------------------------------------------- */

			bool checkResidual(const Array<Real> & residual,
			const Vector<Real> & traction,
			const Array<UInt> & nodes_to_check,
			const Matrix<Real> & rotation) {

			UInt spatial_dimension = residual.getNbComponent();

			Vector<Real> total_force(spatial_dimension);
			total_force.clear();

			for (UInt n = 0; n < nodes_to_check.getSize(); ++n) {
			UInt node = nodes_to_check(n);

			Vector<Real> res(residual.storage() + node * spatial_dimension,
			spatial_dimension);

			total_force += res;
			}

			Vector<Real> theoretical_total_force(spatial_dimension);
			theoretical_total_force.mul<false>(rotation, traction);
			theoretical_total_force = -1 2 * 2;

			for (UInt s = 0; s < spatial_dimension; ++s) {
			if (!Math::are_float_equal(total_force(s), theoretical_total_force(s))) {
			std::cout << "Total force isn't correct!" << std::endl;
			return 1;
			}
			}

			return 0;
			}

rAKA/test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cced1d56ec3948features/28-getelementi…

test_cohesive_intrinsic_tetrahedron.ccView Options

rAKA/test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cc
ed1d56ec3948features/28-getelementi…

test_cohesive_intrinsic_tetrahedron.cc
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