Homec4science
Diffusion akantu (features/30-implementing-a-checkpoint-restart-mechanism) Browse

rAKA/doc/manual/manual.sty
d51a1abe391cfeatures/30-implementin…

Last Change
Raw File

manual.sty
View Options

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% %%
%% LaTeX STYLE SHEET for AKANTU DOCUMENTATION %%
%% %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Geometry
\usepackage{a4wide}
\usepackage{geometry}
\geometry{
pdftex=true,
twoside=true,
margin=20mm,
bottom=20mm,
top=20mm,
bindingoffset=5.5mm
}
% Font encoding
\usepackage[T1]{fontenc}
\usepackage{palatino}
% Line spacing
\linespread{1.05}\selectfont
% Allow spaces to be added at the end of macro
\usepackage{xspace}
% Mathematics (including correct font encoding, after amsmath)
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{pxfonts}
\setlength\mathindent{2em}
% Some unit stuff
\usepackage{siunitx}
% Easy tables
\usepackage{booktabs}
\usepackage{longtable}
\usepackage{rotating} % For sideways tables
\usepackage{multirow} % For larger cells
% A special environment for element tables
\newcommand\elemline{}%{\noalign{\smallskip}\hline\noalign{\smallskip}}
\newcommand\elemcooroned{\ensuremath{\left(\xi\right)}}
\newcommand\elemcoortwod{\ensuremath{\left(\xi\;,\;\eta\right)}}
\newcommand\elemcoorthreed{\ensuremath{\left(\xi\;,\;\eta\;,\;\zeta\right)}}
\newcommand\elemdshapeoned{\ensuremath{\left(\partial N_i/\partial\xi\right)}}
\newcommand\elemdshapetwod{\ensuremath{\left(\partial N_i/\partial\xi\;,\;\partial N_i/\partial\eta\right)}}
\newcommand\elemdshapethreed{\ensuremath{\left(\partial N_i/\partial\xi\;,\;\partial N_i/\partial\eta\;,\;\partial N_i/\partial\zeta\right)}}
\newcommand\inelemone[1]{\ensuremath{#1}}
%\newcommand\inelemtwo[2]{\ensuremath{\begin{pmatrix} {\; #1} & \!,\! & {#2 \;} \end{pmatrix}}}
%\newcommand\inelemthree[3]{\ensuremath{\begin{pmatrix} {\; #1} & \!,\! & {#2} & \!,\! & {#3 \;} \end{pmatrix}}}
\newcommand\inelemtwo[2]{\ensuremath{\left( {\; #1} \; , \; {#2 \;} \right)}}
\newcommand\inelemthree[3]{\ensuremath{\left( {\; #1} \; , \; {#2} \; , \; {#3 \;} \right)}}
\newcommand\inelemthreecolumn[3]{\ensuremath{\begin{array}{c}( {\; #1} \; ,\\{#2} \; ,\\{#3 \;} )\end{array}}}
\newcommand\inquadone[1]{\ensuremath{#1}}
\newcommand\inquadtwo[2]{\ensuremath{\left(\, #1 \, , \, #2 \,\right)}}
\newcommand\inquadthree[3]{\ensuremath{\left(\, #1 \, , \, #2 \, , \, #3 \,\right)}}
%\newcommand\quada{\tfrac{1}{20}\left(5-\sqrt{5}\right)}
%\newcommand\quadb{\tfrac{1}{20}\left(5+3\sqrt{5}\right)}
\newcommand\quada{\tfrac{\left(5-\sqrt{5}\right)}{20}}
\newcommand\quadb{\tfrac{\left(5+3\sqrt{5}\right)}{20}}
\newenvironment{Element}[1]
{%\begin{table*}[!htbp]
\footnotesize
\ifthenelse{\equal{#1}{1D}}{\renewcommand{\arraystretch}{1.50}}{}
\ifthenelse{\equal{#1}{2D}}{\renewcommand{\arraystretch}{1.60}}{}
\ifthenelse{\equal{#1}{3D}}{\renewcommand{\arraystretch}{1.70}}{}
\textbf{{\normalsize Element properties}}\\%\vspace*{0.5\baselineskip}
\begin{tabular}{cccc}\\[-2ex]
\toprule
% \multicolumn{4}{l}{\textbf{{\normalsize Element properties}}} \\
Node ($i$) & Coord.
\ifthenelse{\equal{#1}{1D}}{\elemcooroned}{}
\ifthenelse{\equal{#1}{2D}}{\elemcoortwod}{}
\ifthenelse{\equal{#1}{3D}}{\elemcoorthreed}{}
& Shape function ($N_{i}$)
& {Derivative
\ifthenelse{\equal{#1}{1D}}{\elemdshapeoned}{}
\ifthenelse{\equal{#1}{2D}}{\elemdshapetwod}{}
\ifthenelse{\equal{#1}{3D}}{\elemdshapethreed}{}
}\\
\midrule
\elemline
}
{\bottomrule
\end{tabular}%\end{table*}
}
\newenvironment{Element_part1}[1]
{%\begin{table*}[!htbp]
\footnotesize
\ifthenelse{\equal{#1}{1D}}{\renewcommand{\arraystretch}{1.50}}{}
\ifthenelse{\equal{#1}{2D}}{\renewcommand{\arraystretch}{1.60}}{}
\ifthenelse{\equal{#1}{3D}}{\renewcommand{\arraystretch}{1.70}}{}
\textbf{{\normalsize Element properties}}\\%\vspace*{0.5\baselineskip}
\begin{tabular}{ccc}\\[-2ex]
\toprule
% \multicolumn{4}{l}{\textbf{{\normalsize Element properties}}} \\
Node ($i$) & Coord.
\ifthenelse{\equal{#1}{1D}}{\elemcooroned}{}
\ifthenelse{\equal{#1}{2D}}{\elemcoortwod}{}
\ifthenelse{\equal{#1}{3D}}{\elemcoorthreed}{}
& Shape function ($N_{i}$)\\
\midrule
\elemline
}
{\bottomrule\end{tabular}}%\end{table*}}
\newenvironment{Element_part2}[1]
{%\begin{table*}[!htbp]
\footnotesize
\ifthenelse{\equal{#1}{1D}}{\renewcommand{\arraystretch}{1.50}}{}
\ifthenelse{\equal{#1}{2D}}{\renewcommand{\arraystretch}{1.60}}{}
\ifthenelse{\equal{#1}{3D}}{\renewcommand{\arraystretch}{1.70}}{}
\textbf{{\normalsize Element properties}}\\%\vspace*{0.5\baselineskip}
\begin{tabular}{cccc}\\[-2ex]
\toprule
% \multicolumn{4}{l}{\textbf{{\normalsize Element properties}}} \\
Node ($i$)
& {Derivative
\ifthenelse{\equal{#1}{1D}}{\elemdshapeoned}{}
\ifthenelse{\equal{#1}{2D}}{\elemdshapetwod}{}
\ifthenelse{\equal{#1}{3D}}{\elemdshapethreed}{}
}\\
\midrule
\elemline
}
{\bottomrule
\end{tabular}%\end{table*}
}
\newenvironment{QuadPoints}[1]
{\vspace*{\baselineskip}
%\begin{table*}[!htbp]
\footnotesize
\renewcommand{\arraystretch}{1.50}
\noindent\textbf{{\normalsize Gaussian quadrature points}}\newline%\vspace*{0.5\baselineskip}
\begin{tabular}{#1}\\[-2ex]
\toprule
}
{\bottomrule\end{tabular}}%\end{table*}}
%\usepackage{xparse}
\newenvironment{MaterialDesc}[2]{
\label{#2-app}
Keyword: \code{#1}\par
\noindent Description here: \ref{#2}\par
\noindent Parameters:\par
\vspace*{-.4cm}
\begin{itemize}
\setlength{\topsep}{0ex}%
\setlength{\parsep}{0cm}%
\setlength{\itemsep}{0cm}%
\setlength{\parskip}{0cm}%
}{\end{itemize}}
\newcommand{\matparam}[3]{\item \code{#1}: (\emph{#2}) #3}
\newcommand{\matinherit}[1]{\usebox{#1}}
\newcommand{\matlabel}[1]{\label{#1}\xspace(\ref{#1-app})}
% Nice coloring
\usepackage[dvipsnames,usenames,table]{xcolor}
\definecolor{RED}{rgb}{1,0,0}
\definecolor{cppbg}{HTML}{EBF2F2}
\definecolor{shellbg}{HTML}{F5EDE4}
\definecolor{cmakebg}{HTML}{F5EDE4}
\definecolor{commentcolor}{HTML}{101280}
% Allow for the use of listings
\usepackage{listings}
% Create an index
\usepackage{makeidx}
% Figure handling
\usepackage{graphics}
\usepackage{epsfig}
\usepackage[lofdepth,lotdepth]{subfig}
\usepackage{tikz}
\usetikzlibrary{decorations}
\usepackage{wrapfig}
\renewcommand{\floatpagefraction}{.6} % default: .5
\renewcommand\topfraction{0.9} % 90% of page top can be a float (Standard 0.7)
\renewcommand\bottomfraction{0.1} % 10% of page bottom can be a float (Standard 0.3)
\renewcommand\textfraction{0.1} % only 10% of page must to be text (Standard 0.2)
% Removes parenthese around subfig number
\renewcommand*{\thesubfigure}{\alph{subfigure}}
% Create new list style for cmake files
\lstdefinelanguage{cmake}{
morekeywords={project, cmake\_minimum\_required, enable\_language, message,
add\_executable, add\_library, target\_link\_libraries, include\_directories,
find\_package, find\_path, find\_library, include, mark\_as\_advanced,
find\_package\_handle\_standard\_args,
package\_declare, package\_declare\_documentation},
morecomment=[l]{\#},
sensitive=false,
morestring=[b]",
}
\lstdefinestyle{lstDefaultStyle} {
basicstyle=\small\ttfamily, % Without beramono, we'd get cmtt, the teletype font.
commentstyle=\color{commentcolor}\itshape,
% fontadjust,
% numbers=left, % where to put the line-numbers
% numberstyle=\tiny, % the size of the fonts that are used for the line-numbers
% stepnumber=2, % the step between two line-numbers. If it's 1, each line will
% be numbered
% numbersep=5pt, % how far the line-numbers are from the code
% showspaces=false, % show spaces adding particular underscores
showstringspaces=false, % underline spaces within strings
% showtabs=false, % show tabs within strings adding particular underscores
% frame=llines, % adds a frame around the code
% frame=tb,
tabsize=2, % sets default tabsize to 2 spaces
captionpos=b, % sets the caption-position to bottom
breaklines=true, % sets automatic line breaking
breakatwhitespace=false, % sets if automatic breaks should only happen at
% whitespace
% title=\lstname, % show the filename of files included with \lstinputlisting;
% also try caption instead of title
% escapeinside={\%*}{*)}, % if you want to add a comment within your code
xleftmargin=1cm,
xrightmargin=1cm,
escapechar=\%,
columns=flexible,
keepspaces=true,
mathescape=false
}
% Create a new list style for C++
\lstdefinestyle{C++}{
language=C++, % the language of the code
style=lstDefaultStyle,
keywordstyle=\color{DarkOrchid}\bfseries,
mathescape=true,
morekeywords={Real, UInt, Int},
backgroundcolor=\color{cppbg}
}
% Create a new list style for python
\lstdefinestyle{python}{
language=python, % the language of the code
basicstyle=\small\ttfamily, % Without beramono, we'd get cmtt, the teletype font.
commentstyle=\color{commentcolor}\itshape,
keywordstyle=\color{DarkOrchid}\bfseries,
showstringspaces=false, % underline spaces within strings
tabsize=2, % sets default tabsize to 2 spaces
captionpos=b, % sets the caption-position to bottom
breaklines=true, % sets automatic line breaking
breakatwhitespace=false, % sets if automatic breaks should only happen at
xleftmargin=1cm,
xrightmargin=1cm,
mathescape=true,
escapechar=\%,
morekeywords={Real, UInt, Int},
columns=flexible,
keepspaces=true,
backgroundcolor=\color{cppbg}
}
% Create new list style for the shell
\lstdefinestyle{shell}{
language=bash, % the language of the code
style=lstDefaultStyle,
morekeywords={mkdir, make, ccmake, cmake},
backgroundcolor=\color{shellbg}
}
\lstdefinestyle{mycmake}{
language=cmake, % the language of the code
style=lstDefaultStyle,
keywordstyle=\color{RoyalBlue}\bfseries,
stringstyle=\color{Bittersweet}, %
backgroundcolor=\color{cmakebg}
}
% Set some derived listing environments
\lstnewenvironment{cpp}{\lstset{style=C++}}{}
\lstnewenvironment{python}{\lstset{style=python}}{}
\lstnewenvironment{command}{\lstset{style=shell}}{}
\lstnewenvironment{cmake}{\lstset{style=mycmake}}{}
% Make sure outputspace is white
\makeatletter
\def\lst@outputspace{{\ifx\lst@bkgcolor\empty\color{white}\else\lst@bkgcolor\fi\lst@visiblespace}}
\makeatother
% Renow a label in the itemized lists
\renewcommand{\labelitemi}{$\mathbf{\circ}$}
% Don't care so much about overfull h-boxes
\sloppy
% Penalty adjusments
%\widowpenalty=10000 % Single lines/word on beginning of page
%\clubpenalty=10000 % Single lines/word at end of page
%\hyphenpenalty=2000 % Hyphenate words
%\tolerance=250 % To adjust the hyphenation of words, increase the tolerance to discourage hyphenation
% the higher the value, the more ugly the gaps between words
% default \tolerance=200
%\hfuzz=10000pt % threshold when an overfull hbox is reported, default \hfuzz=0.1pt
%\vfuzz=10000pt % threshold to report an overfull vbox, default \vfuzz=0.1pt
%\hbadness=10000 % threshold to report an underfull \hbox
%\vbadness=10000 % threshold to report an underfull \vbox protokolliert wird.
\emergencystretch=0pt % causes a third attempt to fix bad paragraphs and defines a maximum limit to stretch them
% Insert an empty or a blank page
\newcommand{\insertemptypage}{\newpage\hbox{}\newpage}
\newcommand{\insertblankpage}{\newpage\thispagestyle{empty}\hbox{}\newpage}
% No page number on an empty page
\let\origdoublepage\cleardoublepage
\newcommand{\clearemptydoublepage}{%
\clearpage
{\thispagestyle{empty}\origdoublepage}%
}
\let\cleardoublepage\clearemptydoublepage
% A new ruler for in chapters
\newcommand\InChapterRule{\addvspace{\baselineskip}\rule{0.3\linewidth}{0.25pt}}
% New footnote style
%\def\@fnsymbol#1{\ifcase#1\or *\or \dagger\or \ddagger\or \mathchar "278\or \mathchar "27B\or \|\or **\or \dagger\dagger \or \ddagger\ddagger \else\@ctrerr\fi\relax}
\def\@fnsymbol#1{*\xspace\relax}
\renewcommand{\thefootnote}{\fnsymbol{footnote}} % Symbols rather than numbers
\def\footnoterule{\vspace*{0.5\baselineskip}\InChapterRule\vspace*{0.25\baselineskip}}
% Improved look of the Table of Contents
\usepackage[nottoc,notbib]{tocbibind}
\usepackage[dotinlabels]{titletoc}
\titlecontents{chapter}[1.4pc]
{\addvspace{0.6pc}\large\bfseries\filright}
{\contentslabel[\thecontentslabel.]{1.4pc}}
{\hspace{-1.4pc}}
{\hfill\contentspage}
[\addvspace{2pt}]
\titlecontents{section}[3.4pc]
{\filright}
{\contentslabel[\thecontentslabel]{2pc}}
{\hspace{-2pc}}
{\titlerule*[6pt]{.}\contentspage}
[]
\titlecontents{subsection}[5.0pc]
{\filright}
{\contentslabel[\thecontentslabel]{2.4pc}}
{}
{\titlerule*[6pt]{.}\contentspage}
[]
\setcounter{tocdepth}{2}
\newcommand\addspaceintoc{\addtocontents{toc}{\protect\addvspace{20pt}}}
% Change the appearance of the bibliography
\bibliographystyle{manual-bibliographystyle}
\renewcommand\bibname{References}
\usepackage{cite} % To sort citations: [2,10-14]
\let\oldthebibliography=\thebibliography
\let\endoldthebibliography=\endthebibliography
\renewenvironment{thebibliography}[1]
{ \begin{oldthebibliography}{#1}
% \small
\addcontentsline{toc}{chapter}{\bibname}
\setlength{\labelsep}{2mm}
\setlength{\parskip}{0\baselineskip}
\setlength{\itemsep}{0.24\baselineskip}
}
{ \end{oldthebibliography} }
% Hyperref
\usepackage{url}
\usepackage[pdftex,
bookmarks=true,
bookmarksnumbered=true,
% linkbordercolor={1 1 1},
% pdfborder={0 0 0},
pdfpagemode=UseOutlines
]{hyperref}
\hypersetup{
pdfauthor={Computational Solid Mechanics Laboratory - EPFL},
pdftitle={Akantu User's Guide},
pdfsubject={Open Source Finite Element Code - Akantu}
}
\newenvironment{AkantuPackage}[2]{%
\paragraph*{#1}\label{#2}
}{}
\newenvironment{AkantuPackageDependencies}{\emph{Dependencies}: }{}
\newcommand\AkantuPackageNameWithLabel[3]{\textit{\index{Packages!#1}\hyperref[#2]{#1}}\xspace}
\newcommand\akantuManualAppendix[1]{}
c4science · Help