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rAKA/examples/python/custom-material-dynamics/newmark.py
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newmark.py
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#!/usr/bin/env python3
from __future__ import print_function
################################################################
import os
import subprocess
import numpy as np
import akantu
################################################################
class FixedValue:
def __init__(self, value, axis):
self.value = value
self.axis = axis
def operator(self, node, flags, disp, coord):
# sets the displacement to the desired value in the desired axis
disp[self.axis] = self.value
# sets the blocked dofs vector to true in the desired axis
flags[self.axis] = True
################################################################
class LocalElastic:
def __init__(self):
# young modulus
self.E = 1
# Poisson coefficient
self.nu = 0.3
# density
self.rho = 1
# First Lame coefficient
self._lambda = self.nu * self.E / ((1 + self.nu) * (1 - 2 * self.nu))
# Second Lame coefficient (shear modulus)
self.mu = self.E / (2 * (1 + self.nu))
# declares all the internals
@staticmethod
def registerInternals():
return []
# declares all the parameters that could be parsed
@staticmethod
def registerParam():
return []
# declares all the parameters that are needed
def getPushWaveSpeed(self, params):
return np.sqrt((self._lambda + 2 * self.mu) / self.rho)
# compute small deformation tensor
@staticmethod
def computeEpsilon(grad_u):
return 0.5 * (grad_u + np.einsum('aij->aji', grad_u))
# constitutive law for a given quadrature point
def computeStress(self, grad_u, sigma, internals, params):
lbda = 1.
mu = 1.
nquads = grad_u.shape[0]
grad_u = grad_u.reshape((nquads, 2, 2))
epsilon = self.computeEpsilon(grad_u)
sigma = sigma.reshape((nquads, 2, 2))
trace = np.trace(grad_u, axis1=1, axis2=2)
sigma[:, :, :] = (np.einsum('a,ij->aij', trace, lbda * np.eye(2))
+ mu * epsilon)
################################################################
def main():
spatial_dimension = 2
akantu.initialize('material.dat')
mesh_file = 'bar.msh'
max_steps = 250
time_step = 1e-3
# if mesh was not created the calls gmsh to generate it
if not os.path.isfile(mesh_file):
ret = subprocess.call('gmsh -2 bar.geo bar.msh', shell=True)
if ret != 0:
raise Exception(
'execution of GMSH failed: do you have it installed ?')
################################################################
# Initialization
################################################################
mesh = akantu.Mesh(spatial_dimension)
mesh.read(mesh_file)
mat = LocalElastic()
akantu.registerNewPythonMaterial(mat, "local_elastic")
model = akantu.SolidMechanicsModel(mesh)
model.initFull(akantu.SolidMechanicsModelOptions(
akantu._explicit_lumped_mass))
model.setBaseName("waves")
model.addDumpFieldVector("displacement")
model.addDumpFieldVector("acceleration")
model.addDumpFieldVector("velocity")
model.addDumpFieldVector("internal_force")
model.addDumpFieldVector("external_force")
model.addDumpField("strain")
model.addDumpField("stress")
model.addDumpField("blocked_dofs")
################################################################
# boundary conditions
################################################################
model.applyDirichletBC(FixedValue(0, akantu._x), "XBlocked")
model.applyDirichletBC(FixedValue(0, akantu._y), "YBlocked")
################################################################
# initial conditions
################################################################
displacement = model.getDisplacement()
nb_nodes = mesh.getNbNodes()
position = mesh.getNodes()
pulse_width = 1
A = 0.01
for i in range(0, nb_nodes):
# Sinus * Gaussian
x = position[i, 0] - 5.
L = pulse_width
k = 0.1 * 2 * np.pi * 3 / L
displacement[i, 0] = A * \
np.sin(k * x) * np.exp(-(k * x) * (k * x) / (L * L))
################################################################
# timestep value computation
################################################################
time_factor = 0.8
stable_time_step = model.getStableTimeStep() * time_factor
print("Stable Time Step = {0}".format(stable_time_step))
print("Required Time Step = {0}".format(time_step))
time_step = stable_time_step * time_factor
model.setTimeStep(time_step)
################################################################
# loop for evolution of motion dynamics
################################################################
model.assembleInternalForces()
print("step,step * time_step,epot,ekin,epot + ekin")
for step in range(0, max_steps + 1):
model.solveStep()
if step % 10 == 0:
model.dump()
epot = model.getEnergy('potential')
ekin = model.getEnergy('kinetic')
# output energy calculation to screen
print("{0},{1},{2},{3},{4}".format(step, step * time_step,
epot, ekin,
(epot + ekin)))
akantu.finalize()
return
################################################################
if __name__ == "__main__":
main()
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