Homec4science
Diffusion akantu (features/30-implementing-a-checkpoint-restart-mechanism) Browse

rAKA/python/py_dumpable.cc
8a1376f66a9ffeatures/30-implementin…

Last Change
Raw File

py_dumpable.cc
View Options

/**
* @file py_dumpable.cc
*
* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
*
* @date creation: Sun Jun 16 2019
* @date last modification: Thu Nov 12 2020
*
* @brief pybind11 interface to Dumpers
*
*
* @section LICENSE
*
* Copyright (©) 2018-2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "py_aka_array.hh"
/* -------------------------------------------------------------------------- */
#include <dumper_iohelper_paraview.hh>
#include <mesh.hh>
/* -------------------------------------------------------------------------- */
#include <dumpable_inline_impl.hh>
/* -------------------------------------------------------------------------- */
#include <pybind11/pybind11.h>
/* -------------------------------------------------------------------------- */
namespace py = pybind11;
/* -------------------------------------------------------------------------- */
namespace akantu {
std::vector<detail::ArrayProxy<Real>> tmp_array;
void register_dumpable(py::module & mod) {
/* ------------------------------------------------------------------------ */
py::class_<Dumpable>(mod, "Dumpable")
.def("registerDumperParaview", &Dumpable::registerDumper<DumperParaview>,
py::arg("dumper_name"), py::arg("file_name"),
py::arg("is_default") = false)
.def("addDumpMeshToDumper", &Dumpable::addDumpMeshToDumper,
py::arg("dumper_name"), py::arg("mesh"), py::arg("dimension"),
py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_regular)
.def("addDumpMesh", &Dumpable::addDumpMesh, py::arg("mesh"),
py::arg("dimension"), py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_regular)
.def("addDumpField", &Dumpable::addDumpField, py::arg("field_id"))
.def("addDumpFieldToDumper", &Dumpable::addDumpFieldToDumper,
py::arg("dumper_name"), py::arg("field_id"))
.def(
"addDumpFieldExternal",
[](Dumpable & _this, const std::string & field_id,
std::shared_ptr<dumpers::Field> field) {
return _this.addDumpFieldExternal(field_id, field);
},
py::arg("field_id"), py::arg("field"))
.def(
"addDumpFieldExternal",
[](Dumpable & _this, const std::string & field_id,
Array<Real> & field) {
auto & tmp = dynamic_cast<detail::ArrayProxy<Real> &>(field);
tmp_array.push_back(tmp);
return _this.addDumpFieldExternal(field_id, tmp_array.back());
},
py::arg("field_id"), py::arg("field"))
.def(
"addDumpFieldExternalToDumper",
[](Dumpable & _this, const std::string & dumper_name,
const std::string & field_id,
std::shared_ptr<dumpers::Field> field) {
return _this.addDumpFieldExternalToDumper(dumper_name, field_id,
field);
},
py::arg("dumper_name"), py::arg("field_id"), py::arg("field"))
.def("dump", [](Dumpable & self) { self.dump(); })
.def(
"dump", [](Dumpable & self, UInt step) { self.dump(step); },
py::arg("step"))
.def(
"dump",
[](Dumpable & self, Real time, UInt step) { self.dump(time, step); },
py::arg("time"), py::arg("step"))
.def(
"dump",
[](Dumpable & self, const std::string & dumper) {
self.dump(dumper);
},
py::arg("dumper_name"))
.def(
"dump",
[](Dumpable & self, const std::string & dumper, UInt step) {
self.dump(dumper, step);
},
py::arg("dumper_name"), py::arg("step"))
.def(
"dump",
[](Dumpable & self, const std::string & dumper, Real time,
UInt step) { self.dump(dumper, time, step); },
py::arg("dumper_name"), py::arg("time"), py::arg("step"));
}
/* -------------------------------------------------------------------------- */
PYBIND11_MODULE(dumper_module, mod) {
mod.attr("__name__") = "py11_akantu.dumper";
/* ------------------------------------------------------------------------ */
py::class_<dumpers::Field, std::shared_ptr<dumpers::Field>>(mod, "Field");
/* ------------------------------------------------------------------------ */
py::class_<dumpers::ElementalField<UInt>, dumpers::Field,
std::shared_ptr<dumpers::ElementalField<UInt>>>(
mod, "ElementalFieldUInt", py::multiple_inheritance())
.def(py::init<dumpers::ElementalField<UInt>::field_type &, UInt,
GhostType, ElementKind>(),
py::arg("field"), py::arg("spatial_dimension") = _all_dimensions,
py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_not_defined);
}
} // namespace akantu
c4science · Help