integrator_gauss_inline_impl.hh
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integrator_gauss_inline_impl.hh
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	/**
	* Copyright (©) 2011-2023 EPFL (Ecole Polytechnique Fédérale de Lausanne)
	* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
	*
	* This file is part of Akantu
	*
	* Akantu is free software: you can redistribute it and/or modify it under the
	* terms of the GNU Lesser General Public License as published by the Free
	* Software Foundation, either version 3 of the License, or (at your option) any
	* later version.
	*
	* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
	* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
	* details.
	*
	* You should have received a copy of the GNU Lesser General Public License
	* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
	*/

	/* -------------------------------------------------------------------------- */
	#include "fe_engine.hh"
	#include "mesh_iterators.hh"
	/* -------------------------------------------------------------------------- */
	#include "integrator_gauss.hh"
	/* -------------------------------------------------------------------------- */

	namespace akantu {
	namespace debug {
	struct IntegratorGaussException : public Exception {};
	} // namespace debug
	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline void IntegratorGauss<kind, IntegrationOrderFunctor>::integrateOnElement(
	const Array<Real> & f, Real * intf, Int nb_degree_of_freedom, Idx elem,
	GhostType ghost_type) const {
	auto & jac_loc = jacobians(type, ghost_type);

	auto nb_quadrature_points = ElementClass<type>::getNbQuadraturePoints();
	AKANTU_DEBUG_ASSERT(f.getNbComponent() == nb_degree_of_freedom,
	"The vector f do not have the good number of component.");

	auto * f_val = f.data() + elem * f.getNbComponent();
	auto * jac_val = jac_loc.data() + elem * nb_quadrature_points;

	integrate(f_val, jac_val, intf, nb_degree_of_freedom, nb_quadrature_points);
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline Real IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Vector<Real> & in_f, Idx index, GhostType ghost_type) const {
	const Array<Real> & jac_loc = jacobians(type, ghost_type);

	auto nb_quadrature_points =
	GaussIntegrationElement<type>::getNbQuadraturePoints();
	AKANTU_DEBUG_ASSERT(in_f.size() == nb_quadrature_points,
	"The vector f do not have nb_quadrature_points entries.");

	auto * jac_val = jac_loc.data() + index * nb_quadrature_points;
	Real intf{};

	integrate(in_f.data(), jac_val, &intf, 1, nb_quadrature_points);

	return intf;
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	inline void IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Real * f, const Real * jac, Real * inte, Int nb_degree_of_freedom,
	Int nb_quadrature_points) const {
	Eigen::Map<VectorXr> inte_v(inte, nb_quadrature_points);
	Eigen::Map<const VectorXr> cjac(jac, nb_quadrature_points);

	Eigen::Map<const MatrixXr> fq(f, nb_degree_of_freedom, nb_quadrature_points);

	inte_v.zero();
	inte_v = fq * cjac;
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline const Matrix<Real> &
	IntegratorGauss<kind, IntegrationOrderFunctor>::getIntegrationPoints(
	GhostType ghost_type) const {
	AKANTU_DEBUG_ASSERT(
	quadrature_points.exists(type, ghost_type),
	"Quadrature points for type "
	<< quadrature_points.printType(type, ghost_type)
	<< " have not been initialized."
	<< " Did you use 'computeQuadraturePoints' function ?");
	return (quadrature_points(type, ghost_type));
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline Int
	IntegratorGauss<kind, IntegrationOrderFunctor>::getNbIntegrationPoints(
	GhostType ghost_type) const {
	if (not quadrature_points.exists(type, ghost_type)) {
	constexpr auto polynomial_degree =
	IntegrationOrderFunctor::template getOrder<type>();
	return GaussIntegrationElement<type,
	polynomial_degree>::getQuadraturePoints()
	.cols();
	}
	return quadrature_points(type, ghost_type).cols();
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline Int
	IntegratorGauss<kind, IntegrationOrderFunctor>::getNbIntegrationPoints(
	GhostType ghost_type) {
	if (not quadrature_points.exists(type, ghost_type)) {
	this->template computeQuadraturePoints<type>(ghost_type);
	}
	return quadrature_points(type, ghost_type).cols();
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, Int polynomial_degree>
	inline Matrix<Real>
	IntegratorGauss<kind, IntegrationOrderFunctor>::getIntegrationPoints() const {
	return GaussIntegrationElement<type,
	polynomial_degree>::getQuadraturePoints();
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, Int polynomial_degree>
	inline Vector<Real>
	IntegratorGauss<kind, IntegrationOrderFunctor>::getIntegrationWeights() const {
	return GaussIntegrationElement<type, polynomial_degree>::getWeights();
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline void
	IntegratorGauss<kind, IntegrationOrderFunctor>::computeQuadraturePoints(
	GhostType ghost_type) {
	auto & quads = quadrature_points(type, ghost_type);
	constexpr auto polynomial_degree =
	IntegrationOrderFunctor::template getOrder<type>();
	quads =
	GaussIntegrationElement<type, polynomial_degree>::getQuadraturePoints();
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, class D1, class D2, class D3>
	inline void IntegratorGauss<kind, IntegrationOrderFunctor>::
	computeJacobianOnQuadPointsByElement(
	const Eigen::MatrixBase<D1> & node_coords,
	const Eigen::MatrixBase<D2> & quad,
	Eigen::MatrixBase<D3> & jacobians) const {
	// jacobian
	ElementClass<type>::computeJacobian(quad, node_coords, jacobians);
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	IntegratorGauss<kind, IntegrationOrderFunctor>::IntegratorGauss(
	const Mesh & mesh, Int spatial_dimension, const ID & id)
	: Integrator(mesh, spatial_dimension, id) {}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::checkJacobians(
	GhostType ghost_type) const {
	auto nb_quadrature_points = this->quadrature_points(type, ghost_type).cols();
	auto nb_element = mesh.getConnectivity(type, ghost_type).size();
	auto * jacobians_val = jacobians(type, ghost_type).data();

	for (Idx i = 0; i < nb_element * nb_quadrature_points; ++i, ++jacobians_val) {
	if (*jacobians_val < 0) {
	AKANTU_CUSTOM_EXCEPTION_INFO(debug::IntegratorGaussException{},
	"Negative jacobian computed,"
	<< " possible problem in the element "
	"node ordering (Quadrature Point "
	<< i % nb_quadrature_points << ":"
	<< i / nb_quadrature_points << ":"
	<< type << ":" << ghost_type << ")");
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::
	computeJacobiansOnIntegrationPoints(
	const Array<Real> & nodes, const Matrix<Real> & quad_points,
	Array<Real> & jacobians, GhostType ghost_type,
	const Array<Idx> & filter_elements) const {
	auto spatial_dimension = mesh.getSpatialDimension();
	auto nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	auto nb_quadrature_points = quad_points.cols();
	auto nb_element = mesh.getNbElement(type, ghost_type);

	jacobians.resize(nb_element * nb_quadrature_points);

	auto jacobians_it = make_view(jacobians, nb_quadrature_points).begin();
	auto jacobians_begin = jacobians_it;

	Array<Real> x_el(0, spatial_dimension * nb_nodes_per_element);
	FEEngine::extractNodalToElementField(mesh, nodes, x_el, type, ghost_type,
	filter_elements);

	auto x_it = make_view(x_el, spatial_dimension, nb_nodes_per_element).begin();

	nb_element = x_el.size();

	// Matrix<Real> local_coord(spatial_dimension, nb_nodes_per_element);
	for (Idx elem = 0; elem < nb_element; ++elem, ++x_it) {
	const auto & x = *x_it;
	if (filter_elements != empty_filter) {
	jacobians_it = jacobians_begin + filter_elements(elem);
	}

	computeJacobianOnQuadPointsByElement<type>(x, quad_points, *jacobians_it);

	if (filter_elements == empty_filter) {
	++jacobians_it;
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	#if defined(AKANTU_STRUCTURAL_MECHANICS)
	template <>
	template <ElementType type>
	void IntegratorGauss<_ek_structural, DefaultIntegrationOrderFunctor>::
	computeJacobiansOnIntegrationPoints(
	const Array<Real> & nodes, const Matrix<Real> & quad_points,
	Array<Real> & jacobians, GhostType ghost_type,
	const Array<Int> & filter_elements) const {
	const auto spatial_dimension = mesh.getSpatialDimension();
	const auto nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	const auto nb_quadrature_points = quad_points.cols();
	const auto nb_dofs = ElementClass<type>::getNbDegreeOfFreedom();

	auto nb_element = mesh.getNbElement(type, ghost_type);
	jacobians.resize(nb_element * nb_quadrature_points);

	auto jacobians_it = make_view(jacobians, nb_quadrature_points).begin();
	auto jacobians_begin = jacobians_it;

	Array<Real> x_el(0, spatial_dimension * nb_nodes_per_element);
	FEEngine::extractNodalToElementField(mesh, nodes, x_el, type, ghost_type,
	filter_elements);

	auto x_it = make_view(x_el, spatial_dimension, nb_nodes_per_element).begin();

	nb_element = x_el.size();

	Array<Real> zeros(nb_element, spatial_dimension, 0.);

	const auto has_extra_normal =
	mesh.hasData<Real>("extra_normal", type, ghost_type);
	auto extra_normal_begin = make_const_view(zeros, spatial_dimension).begin();

	if (has_extra_normal) {
	extra_normal_begin =
	make_const_view(mesh.getData<Real>("extra_normal", type, ghost_type),
	spatial_dimension)
	.begin();
	}

	auto extra_normal = extra_normal_begin;

	// Matrix<Real> local_coord(spatial_dimension, nb_nodes_per_element);
	for (Idx elem = 0; elem < nb_element; ++elem, ++x_it) {
	if (filter_elements != empty_filter) {
	jacobians_it = jacobians_begin + filter_elements(elem);
	if (has_extra_normal) {
	extra_normal = extra_normal_begin + filter_elements(elem);
	}
	}

	const auto & X = *x_it;
	auto & J = *jacobians_it;
	Matrix<Real, nb_dofs, nb_dofs> R;

	ElementClass<type>::computeRotationMatrix(R, X, *extra_normal);

	const Int natural_space = ElementClass<type>::getNaturalSpaceDimension();
	const Int nb_nodes = ElementClass<type>::getNbNodesPerElement();
	// Extracting relevant lines

	Matrix<Real> RX = R.block(0, 0, spatial_dimension, spatial_dimension) * X;

	auto x = RX.template block<natural_space, nb_nodes>(0, 0);

	computeJacobianOnQuadPointsByElement<type>(x, quad_points, J);

	if (filter_elements == empty_filter) {
	++jacobians_it;
	if (has_extra_normal) {
	++extra_normal;
	}
	}
	}
	}
	#endif

	/* -------------------------------------------------------------------------- */
	#if defined(AKANTU_COHESIVE_ELEMENT)
	template <>
	template <ElementType type>
	void IntegratorGauss<_ek_cohesive, DefaultIntegrationOrderFunctor>::
	computeJacobiansOnIntegrationPoints(
	const Array<Real> & nodes, const Matrix<Real> & quad_points,
	Array<Real> & jacobians, GhostType ghost_type,
	const Array<Int> & filter_elements) const {
	auto spatial_dimension = mesh.getSpatialDimension();
	auto nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	auto nb_quadrature_points = quad_points.cols();
	auto nb_element = mesh.getNbElement(type, ghost_type);

	jacobians.resize(nb_element * nb_quadrature_points);

	auto jacobians_begin = make_view(jacobians, nb_quadrature_points).begin();

	Array<Real> x_el(0, spatial_dimension * nb_nodes_per_element);
	FEEngine::extractNodalToElementField(mesh, nodes, x_el, type, ghost_type,
	filter_elements);

	auto x_it = make_view(x_el, spatial_dimension, nb_nodes_per_element).begin();

	auto nb_nodes_per_subelement = nb_nodes_per_element / 2;
	Matrix<Real> x(spatial_dimension, nb_nodes_per_subelement);

	nb_element = x_el.size();
	Idx l_el = 0;

	auto compute = [&](const auto & el) {
	auto && J = jacobians_begin[el];
	auto && X = x_it[l_el];
	++l_el;

	for (Int n = 0; n < nb_nodes_per_subelement; ++n) {
	x(n) = (X(n) + X(n + nb_nodes_per_subelement)) / 2.;
	}

	if (type == _cohesive_1d_2) {
	J(0) = 1;
	} else {
	this->computeJacobianOnQuadPointsByElement<type>(x, quad_points, J);
	}
	};

	for_each_element(nb_element, filter_elements, compute);
	}
	#endif
	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::
	precomputeJacobiansOnQuadraturePoints(const Array<Real> & nodes,
	GhostType ghost_type) {
	auto & jacobians_tmp = jacobians.alloc(0, 1, type, ghost_type);

	this->computeJacobiansOnIntegrationPoints<type>(
	nodes, quadrature_points(type, ghost_type), jacobians_tmp, ghost_type);
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, Int polynomial_degree>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::multiplyJacobiansByWeights(
	Array<Real> & jacobians, const Array<Int> & filter_elements) const {
	constexpr auto nb_quadrature_points =
	GaussIntegrationElement<type, polynomial_degree>::getNbQuadraturePoints();
	auto && weights =
	GaussIntegrationElement<type, polynomial_degree>::getWeights();

	auto && view = make_view<nb_quadrature_points>(jacobians);

	if (filter_elements != empty_filter) {
	for (auto && J : filter(filter_elements, view)) {
	J.array() *= weights.array();
	}
	} else {
	for (auto && J : view) {
	J.array() *= weights.array();
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Array<Real> & in_f, Array<Real> & intf, Int nb_degree_of_freedom,
	const Array<Real> & jacobians, Int nb_element) const {
	intf.resize(nb_element);
	if (nb_element == 0) {
	return;
	}

	auto nb_points = jacobians.size() / nb_element;

	for (auto && [f, int_f, J] :
	zip(make_view(in_f, nb_degree_of_freedom, nb_points),
	make_view(intf, nb_degree_of_freedom),
	make_view(jacobians, nb_points))) {
	int_f = f * J;
	}
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Array<Real> & in_f, Array<Real> & intf, Int nb_degree_of_freedom,
	GhostType ghost_type, const Array<Int> & filter_elements) const {
	AKANTU_DEBUG_ASSERT(jacobians.exists(type, ghost_type),
	"No jacobians for the type "
	<< jacobians.printType(type, ghost_type));

	const auto & jac_loc = jacobians(type, ghost_type);
	if (filter_elements != empty_filter) {
	auto nb_element = filter_elements.size();
	Array<Real> filtered_J(0, jac_loc.getNbComponent());
	FEEngine::filterElementalData(mesh, jac_loc, filtered_J, type, ghost_type,
	filter_elements);
	this->integrate(in_f, intf, nb_degree_of_freedom, filtered_J, nb_element);
	} else {
	auto nb_element = mesh.getNbElement(type, ghost_type);
	this->integrate(in_f, intf, nb_degree_of_freedom, jac_loc, nb_element);
	}
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, Int polynomial_degree>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Array<Real> & in_f, Array<Real> & intf, Int nb_degree_of_freedom,
	GhostType ghost_type) const {
	auto quads = this->getIntegrationPoints<type, polynomial_degree>();

	Array<Real> jacobians;
	this->computeJacobiansOnIntegrationPoints<type>(mesh.getNodes(), quads,
	jacobians, ghost_type);
	this->multiplyJacobiansByWeights<type, polynomial_degree>(jacobians);

	this->integrate(in_f, intf, nb_degree_of_freedom, jacobians,
	mesh.getNbElement(type, ghost_type));
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type, Int polynomial_degree>
	Real IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Array<Real> & in_f, GhostType ghost_type) const {
	Array<Real> intfv(0, 1);
	integrate<type, polynomial_degree>(in_f, intfv, 1, ghost_type);

	auto res = Math::reduce(intfv);
	return res;
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	Real IntegratorGauss<kind, IntegrationOrderFunctor>::integrate(
	const Array<Real> & in_f, GhostType ghost_type,
	const Array<Int> & filter_elements) const {
	if (in_f.empty()) {
	return 0;
	}
	AKANTU_DEBUG_ASSERT(jacobians.exists(type, ghost_type),
	"No jacobians for the type "
	<< jacobians.printType(type, ghost_type));

	Array<Real> intfv(0, 1);
	integrate<type>(in_f, intfv, 1, ghost_type, filter_elements);

	auto res = Math::reduce(intfv);
	return res;
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline void
	IntegratorGauss<kind, IntegrationOrderFunctor>::onElementsAddedByType(
	const Array<Idx> & elements, GhostType ghost_type) {
	const auto & nodes = mesh.getNodes();

	computeQuadraturePoints<type>(ghost_type);

	if (not jacobians.exists(type, ghost_type)) {
	jacobians.alloc(0, 1, type, ghost_type);
	}

	this->computeJacobiansOnIntegrationPoints(
	nodes, quadrature_points(type, ghost_type), jacobians(type, ghost_type),
	type, ghost_type, elements);

	constexpr auto polynomial_degree =
	IntegrationOrderFunctor::template getOrder<type>();

	this->multiplyJacobiansByWeights<type, polynomial_degree>(
	this->jacobians(type, ghost_type), elements);
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::onElementsAdded(
	const Array<Element> & new_elements) {
	for (auto elements_range : MeshElementsByTypes(new_elements)) {
	auto type = elements_range.getType();
	auto ghost_type = elements_range.getGhostType();

	if (mesh.getSpatialDimension(type) != _spatial_dimension) {
	continue;
	}

	if (Mesh::getKind(type) != kind) {
	continue;
	}

	tuple_dispatch<ElementTypes_t<kind>>(
	[&](auto && enum_type) {
	constexpr auto type = aka::decay_v<decltype(enum_type)>;

	this->template onElementsAddedByType<type>(
	elements_range.getElements(), ghost_type);
	},
	type);
	}
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	template <ElementType type>
	inline void IntegratorGauss<kind, IntegrationOrderFunctor>::initIntegrator(
	const Array<Real> & nodes, GhostType ghost_type) {
	computeQuadraturePoints<type>(ghost_type);
	precomputeJacobiansOnQuadraturePoints<type>(nodes, ghost_type);
	checkJacobians<type>(ghost_type);
	constexpr auto polynomial_degree =
	IntegrationOrderFunctor::template getOrder<type>();
	multiplyJacobiansByWeights<type, polynomial_degree>(
	this->jacobians(type, ghost_type));
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	inline void IntegratorGauss<kind, IntegrationOrderFunctor>::initIntegrator(
	const Array<Real> & nodes, ElementType type, GhostType ghost_type) {
	tuple_dispatch<ElementTypes_t<kind>>(
	[&](auto && enum_type) {
	constexpr auto type = aka::decay_v<decltype(enum_type)>;

	this->template initIntegrator<type>(nodes, ghost_type);
	},
	type);
	}

	/* -------------------------------------------------------------------------- */
	template <ElementKind kind, class IntegrationOrderFunctor>
	void IntegratorGauss<kind, IntegrationOrderFunctor>::
	computeJacobiansOnIntegrationPoints(
	const Array<Real> & nodes, const Matrix<Real> & quad_points,
	Array<Real> & jacobians, ElementType type, GhostType ghost_type,
	const Array<Idx> & filter_elements) const {
	tuple_dispatch<ElementTypes_t<kind>>(
	[&](auto && enum_type) {
	constexpr auto type = aka::decay_v<decltype(enum_type)>;

	this->template computeJacobiansOnIntegrationPoints<type>(
	nodes, quad_points, jacobians, ghost_type, filter_elements);
	},
	type);
	}

	} // namespace akantu

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