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test_model_solver_dynamic_petsc.cc
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rAKA akantu
test_model_solver_dynamic_petsc.cc
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/**
* @file test_model_solver_dynamic_petsc.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Sun Jan 06 2019
* @date last modification: Wed Mar 13 2019
*
* @brief Test default dof manager
*
*
* @section LICENSE
*
* Copyright (©) 2018-2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "communicator.hh"
#include "element_group.hh"
#include "mesh.hh"
#include "mesh_accessor.hh"
#include "non_linear_solver.hh"
/* -------------------------------------------------------------------------- */
#include "boundary_condition_functor.hh"
#include "mpi_communicator_data.hh"
/* -------------------------------------------------------------------------- */
#include "dumpable_inline_impl.hh"
#include "dumper_element_partition.hh"
#include "dumper_iohelper_paraview.hh"
/* -------------------------------------------------------------------------- */
#include <fstream>
/* -------------------------------------------------------------------------- */
#include <petscmat.h>
#include <petscsnes.h>
#include <petscvec.h>
/* -------------------------------------------------------------------------- */
#ifndef EXPLICIT
#define EXPLICIT true
#endif
template <typename func>
void CHECK_ERR_CXX(func && func_, PetscErrorCode ierr) {
if (PetscUnlikely(ierr != 0)) {
const char * desc;
PetscErrorMessage(ierr, &desc, nullptr);
AKANTU_EXCEPTION("Error in PETSc call to \'" << func_ << "\': " << desc);
}
}
using namespace akantu;
static void genMesh(Mesh & mesh, UInt nb_nodes);
class MyModel {
public:
MyModel(Real F, Mesh & mesh, bool lumped)
: nb_dofs(mesh.getNbNodes()), nb_elements(mesh.getNbElement(_segment_2)),
lumped(lumped), E(1.), A(1.), rho(1.), mesh(mesh),
displacement(nb_dofs, 1, "disp"), velocity(nb_dofs, 1, "velo"),
acceleration(nb_dofs, 1, "accel"), blocked(nb_dofs, 1, "blocked"),
forces(nb_dofs, 1, "force_ext"),
internal_forces(nb_dofs, 1, "force_int"),
stresses(nb_elements, 1, "stress"), strains(nb_elements, 1, "strain"),
initial_lengths(nb_elements, 1, "L0") {
auto n_global = mesh.getNbGlobalNodes();
int n_local = 0;
std::vector<PetscInt> nodes_global_ids(nb_dofs);
for (auto && data : enumerate(nodes_global_ids)) {
auto n = std::get<0>(data);
n_local += mesh.isLocalOrMasterNode(n);
std::get<1>(data) = mesh.getNodeGlobalId(n);
}
mpi_comm = dynamic_cast<MPICommunicatorData &>(
mesh.getCommunicator().getCommunicatorData())
.getMPICommunicator();
MeshAccessor mesh_accessor(mesh);
ierr = ISLocalToGlobalMappingCreate(
mpi_comm, 1, mesh.getNbNodes(), nodes_global_ids.data(),
PETSC_COPY_VALUES, &petsc_local_to_global);
CHECK_ERR_CXX("ISLocalToGlobalMappingCreate", ierr);
auto setName = [](auto && Obj, auto && name) {
PetscObjectSetName(reinterpret_cast<PetscObject>(Obj), name);
};
ierr = VecCreate(mpi_comm, &rhs);
ierr = VecSetSizes(rhs, n_local, n_global);
ierr = VecSetFromOptions(rhs);
ierr = VecSetLocalToGlobalMapping(rhs, petsc_local_to_global);
setName(rhs, "rhs");
ierr = VecDuplicate(rhs, &x);
ierr = VecDuplicate(rhs, &x_save);
ierr = VecDuplicate(rhs, &dx);
ierr = VecDuplicate(rhs, &f_int);
ierr = VecDuplicate(rhs, &f_dirichlet);
setName(x, "x");
setName(x_save, "x save");
setName(dx, "dx");
setName(f_int, "f_int");
setName(f_dirichlet, "f_dirichlet");
ierr = MatCreate(mpi_comm, &M);
ierr = MatSetSizes(M, n_local, n_local, n_global, n_global);
ierr = MatSetFromOptions(M);
ierr = MatSetOption(M, MAT_SYMMETRIC, PETSC_TRUE);
ierr = MatSetOption(M, MAT_ROW_ORIENTED, PETSC_TRUE);
ierr = MatSetUp(M);
ierr = MatSetLocalToGlobalMapping(M, petsc_local_to_global,
petsc_local_to_global);
setName(M, "M");
assembleMass();
ierr = MatDuplicate(M, MAT_DO_NOT_COPY_VALUES, &K);
setName(K, "K");
ierr = MatDuplicate(M, MAT_DO_NOT_COPY_VALUES, &J);
setName(J, "J");
ierr = SNESCreate(mpi_comm, &snes);
ierr = SNESSetFromOptions(snes);
ierr = SNESSetFunction(snes, rhs, MyModel::FormFunction, this);
ierr = SNESSetJacobian(snes, J, J, MyModel::FormJacobian, this);
PetscViewerPushFormat(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_ASCII_INDEX);
displacement.set(0.);
velocity.set(0.);
acceleration.set(0.);
forces.set(0.);
blocked.set(false);
blocked(0, 0) = true;
blocked(nb_dofs - 1, 0) = true;
displacement(0, 0) = 0;
displacement(nb_dofs - 1, 0) = 1;
for (auto && data :
zip(make_view(this->mesh.getConnectivity(_segment_2), 2),
make_view(this->initial_lengths))) {
const auto & conn = std::get<0>(data);
auto & L = std::get<1>(data);
auto p1 = this->mesh.getNodes()(conn(0), _x);
auto p2 = this->mesh.getNodes()(conn(1), _x);
L = std::abs(p2 - p1);
}
}
// static PetscErrorCode SNESMonitor(SNES snes,PetscInt its,PetscReal
// fnorm,void *ctx) {
// auto & _this = *reinterpret_cast<MyModel *>(ctx);
// //SNESMonitorDefault(snes, its, fnorm, PETSC_VIEWER_STDOUT_WORLD);
// }
static PetscErrorCode FormFunction(SNES /*snes*/, Vec /*dx*/, Vec /*f*/,
void * ctx) {
auto & _this = *reinterpret_cast<MyModel *>(ctx);
_this.assembleResidual();
return 0;
}
static PetscErrorCode FormJacobian(SNES /*snes*/, Vec /*dx*/, Mat /*J*/,
Mat /*P*/, void * ctx) {
auto & _this = *reinterpret_cast<MyModel *>(ctx);
_this.assembleJacobian();
return 0;
}
~MyModel() {
ierr = MatDestroy(&M);
ierr = MatDestroy(&K);
ierr = MatDestroy(&J);
ierr = VecDestroy(&rhs);
ierr = VecDestroy(&x);
ierr = VecDestroy(&dx);
ierr = VecDestroy(&x_save);
ierr = VecDestroy(&f_int);
PetscFinalize();
}
void solveStep() {
std::cout << "solveStep" << std::endl;
copy(x_save, displacement);
ierr = SNESSolve(snes, NULL, dx);
CHECK_ERR_CXX("SNESSolve", ierr);
setSolutionToDisplacement();
assembleResidual();
}
void applyBC() {
std::vector<PetscInt> rows;
for (auto && data : enumerate(blocked)) {
if (std::get<1>(data)) {
rows.push_back(std::get<0>(data));
}
}
copy(x, displacement);
ierr = MatZeroRowsColumnsLocal(J, rows.size(), rows.data(), 1., x,
f_dirichlet);
VecView(f_dirichlet, PETSC_VIEWER_STDOUT_WORLD);
CHECK_ERR_CXX("MatZeroRowsColumnsLocal", ierr);
}
void setSolutionToDisplacement() {
std::cout << "setSolutionToDisplacement" << std::endl;
ierr = VecWAXPY(x, 1, x_save, dx);
copy(displacement, x);
}
void assembleJacobian() {
std::cout << "assembleJacobian" << std::endl;
setSolutionToDisplacement();
assembleStiffness();
ierr = MatZeroEntries(J);
CHECK_ERR_CXX("MatZeroEntries", ierr);
ierr = MatAXPY(J, 1., K, SAME_NONZERO_PATTERN);
CHECK_ERR_CXX("MatAXPY", ierr);
MatView(J, PETSC_VIEWER_STDOUT_WORLD);
applyBC();
MatView(J, PETSC_VIEWER_STDOUT_WORLD);
}
void assembleMass() {
std::cout << "assembleMass" << std::endl;
ierr = MatZeroEntries(M);
CHECK_ERR_CXX("MatZeroEntries", ierr);
Array<Real> m_all_el(this->nb_elements, 4);
Matrix<Real> m(2, 2);
m(0, 0) = m(1, 1) = 2;
m(0, 1) = m(1, 0) = 1;
// under integrated
// m(0, 0) = m(1, 1) = 3./2.;
// m(0, 1) = m(1, 0) = 3./2.;
// lumping the mass matrix
// m(0, 0) += m(0, 1);
// m(1, 1) += m(1, 0);
// m(0, 1) = m(1, 0) = 0;
for (auto && data :
zip(make_view(this->mesh.getConnectivity(_segment_2), 2),
make_view(m_all_el, 2, 2))) {
const auto & conn = std::get<0>(data);
auto & m_el = std::get<1>(data);
UInt n1 = conn(0);
UInt n2 = conn(1);
Real p1 = this->mesh.getNodes()(n1, _x);
Real p2 = this->mesh.getNodes()(n2, _x);
Real L = std::abs(p2 - p1);
m_el = m;
m_el *= rho * A * L / 6.;
Vector<Int> conn_int(conn.size());
for (auto && data : zip(conn_int, conn)) {
std::get<0>(data) = std::get<1>(data);
}
ierr = MatSetValuesLocal(M, conn_int.size(), conn_int.storage(),
conn_int.size(), conn_int.storage(), m.storage(),
ADD_VALUES);
}
ierr = MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY);
ierr = MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY);
ierr = MatSetOption(M, MAT_NEW_NONZERO_LOCATIONS, PETSC_FALSE);
PetscViewer viewer;
ierr = PetscViewerASCIIOpen(mpi_comm, "M.mtx", &viewer);
PetscViewerPushFormat(viewer, PETSC_VIEWER_ASCII_MATRIXMARKET);
ierr = MatView(M, viewer);
PetscViewerPopFormat(viewer);
ierr = PetscViewerDestroy(&viewer);
// this->getDOFManager().assembleElementalMatricesToMatrix(
// "M", "disp", m_all_el, _segment_2);
is_mass_assembled = true;
}
// MatrixType getMatrixType(const ID &) { return _symmetric; }
// void assembleMatrix(const ID & matrix_id) {
// if (matrix_id == "K") {
// if (not is_stiffness_assembled)
// this->assembleStiffness();
// } else if (matrix_id == "M") {
// if (not is_mass_assembled)
// this->assembleMass();
// } else if (matrix_id == "C") {
// // pass, no damping matrix
// } else {
// AKANTU_EXCEPTION("This solver does not know what to do with a matrix "
// << matrix_id);
// }
// }
void assembleLumpedMatrix(const ID & matrix_id) {
std::cout << "assembleLumpedMatrix" << std::endl;
AKANTU_EXCEPTION("This solver does not know what to do with a matrix "
<< matrix_id);
}
void assembleStiffness() {
std::cout << "assembleStiffness" << std::endl;
// SparseMatrix & K = this->getDOFManager().getMatrix("K");
// K.zero();
ierr = MatZeroEntries(K);
CHECK_ERR_CXX("MatZeroEntries", ierr);
Matrix<Real> k(2, 2);
k(0, 0) = k(1, 1) = 1;
k(0, 1) = k(1, 0) = -1;
Array<Real> k_all_el(this->nb_elements, 4);
auto k_it = k_all_el.begin(2, 2);
auto cit = this->mesh.getConnectivity(_segment_2).begin(2);
auto cend = this->mesh.getConnectivity(_segment_2).end(2);
for (; cit != cend; ++cit, ++k_it) {
const auto & conn = *cit;
UInt n1 = conn(0);
UInt n2 = conn(1);
Real p1 = this->mesh.getNodes()(n1, _x);
Real p2 = this->mesh.getNodes()(n2, _x);
Real L = std::abs(p2 - p1);
auto & k_el = *k_it;
k_el = k;
k_el *= E * A / L;
Vector<Int> conn_int(conn.size());
for (auto && data : zip(conn_int, conn)) {
std::get<0>(data) = std::get<1>(data);
}
ierr = MatSetValuesLocal(K, conn_int.size(), conn_int.storage(),
conn_int.size(), conn_int.storage(),
k_el.storage(), ADD_VALUES);
}
ierr = MatAssemblyBegin(K, MAT_FINAL_ASSEMBLY);
CHECK_ERR_CXX("MatAssemblyBegin", ierr);
ierr = MatAssemblyEnd(K, MAT_FINAL_ASSEMBLY);
CHECK_ERR_CXX("MatAssemblyEnd", ierr);
ierr = MatSetOption(K, MAT_NEW_NONZERO_LOCATIONS, PETSC_FALSE);
CHECK_ERR_CXX("MatSetOption", ierr);
PetscViewer viewer;
ierr = PetscViewerASCIIOpen(mpi_comm, "K.mtx", &viewer);
CHECK_ERR_CXX("PetscViewerASCIIOpen", ierr);
PetscViewerPushFormat(viewer, PETSC_VIEWER_ASCII_MATRIXMARKET);
ierr = MatView(K, viewer);
CHECK_ERR_CXX("MatView", ierr);
PetscViewerPopFormat(viewer);
ierr = PetscViewerDestroy(&viewer);
CHECK_ERR_CXX("PetscViewerDestroy", ierr);
// this->getDOFManager().assembleElementalMatricesToMatrix(
// "K", "disp", k_all_el, _segment_2);
is_stiffness_assembled = true;
}
void copy(Array<Real> & y, Vec x) {
std::cout << "copy <-" << std::endl;
const PetscScalar * x_local;
ierr = VecGetArrayRead(x, &x_local);
for (auto && data : zip(y, range(x_local + 0, x_local + y.size()))) {
std::get<0>(data) = std::get<1>(data);
}
ierr = VecRestoreArrayRead(x, &x_local);
// VecView(x, PETSC_VIEWER_STDOUT_WORLD);
// std::cout << y.getID() << " " << Vector<Real>(y.storage(), y.size())
// << std::endl;
}
void print(const Array<Real> & x) const {
std::cout << x.getID() << " " << Vector<Real>(x.storage(), x.size())
<< std::endl;
}
void copy(Vec x, const Array<Real> & y) {
std::cout << "copy ->" << std::endl;
PetscScalar * x_local;
ierr = VecGetArray(x, &x_local);
for (auto && data : zip(y, range(x_local + 0, x_local + y.size()))) {
std::get<1>(data) = std::get<0>(data);
}
ierr = VecRestoreArray(x, &x_local);
// std::cout << y.getID() << " " << Vector<Real>(y.storage(), y.size())
// << std::endl;
// VecView(x, PETSC_VIEWER_STDOUT_WORLD);
}
void assembleResidual() {
std::cout << "assembleResidual" << std::endl;
// this->getDOFManager().assembleToResidual("disp", forces);
setSolutionToDisplacement();
copy(rhs, forces);
// VecAXPY(rhs, -1., f_dirichlet);
print(displacement);
this->assembleResidual(_not_ghost);
// this->synchronize(SynchronizationTag::_user_1);
// this->getDOFManager().assembleToResidual("disp", internal_forces, -1.);
VecAXPY(rhs, 1., f_int);
for (auto && data : enumerate(blocked)) {
if (std::get<1>(data)) {
VecSetValueLocal(rhs, std::get<0>(data), 0., INSERT_VALUES);
}
}
VecAssemblyBegin(rhs);
VecAssemblyEnd(rhs);
VecView(rhs, PETSC_VIEWER_STDOUT_WORLD);
}
void assembleResidual(GhostType ghost_type) {
std::cout << "assembleResidual" << std::endl;
VecZeroEntries(f_int);
auto cit = this->mesh.getConnectivity(_segment_2, ghost_type).begin(2);
auto cend = this->mesh.getConnectivity(_segment_2, ghost_type).end(2);
auto strain_it = this->strains.begin();
auto stress_it = this->stresses.begin();
auto L_it = this->initial_lengths.begin();
for (; cit != cend; ++cit, ++strain_it, ++stress_it, ++L_it) {
const auto & conn = *cit;
UInt n1 = conn(0);
UInt n2 = conn(1);
Real u1 = this->displacement(n1, _x);
Real u2 = this->displacement(n2, _x);
*strain_it = (u2 - u1) / *L_it;
*stress_it = E * *strain_it;
Real f_n = A * *stress_it;
std::cout << n1 << "[" << u1 << "]"
<< " <-> " << n2 << "[" << u2 << "]"
<< " : " << f_n << std::endl;
ierr = VecSetValueLocal(f_int, n1, -f_n, ADD_VALUES);
ierr = VecSetValueLocal(f_int, n2, f_n, ADD_VALUES);
}
ierr = VecAssemblyBegin(f_int);
ierr = VecAssemblyEnd(f_int);
// this->getDOFManager().assembleElementalArrayLocalArray(
// forces_internal_el, internal_forces, _segment_2, ghost_type);
}
Real getPotentialEnergy() {
std::cout << "getPotentialEnergy" << std::endl;
copy(x, displacement);
Vec Ax;
ierr = VecDuplicate(x, &Ax);
ierr = MatMult(K, x, Ax);
PetscScalar res;
ierr = VecDot(x, Ax, &res);
return res / 2.;
}
Real getKineticEnergy() {
std::cout << "getKineticEnergy" << std::endl;
return 0;
}
// Real getExternalWorkIncrement() {
// Real res = 0;
// auto it = velocity.begin();
// auto end = velocity.end();
// auto if_it = internal_forces.begin();
// auto ef_it = forces.begin();
// auto b_it = blocked.begin();
// for (UInt node = 0; it != end; ++it, ++if_it, ++ef_it, ++b_it, ++node) {
// if (mesh.isLocalOrMasterNode(node))
// res += (*b_it ? -*if_it : *ef_it) * *it;
// }
// mesh.getCommunicator().allReduce(res, SynchronizerOperation::_sum);
// return res * this->getTimeStep();
// }
// void predictor() {}
// void corrector() {}
// /* ------------------------------------------------------------------------
// */ UInt getNbData(const Array<Element> & elements,
// const SynchronizationTag &) const {
// return elements.size() * sizeof(Real);
// }
// void packData(CommunicationBuffer & buffer, const Array<Element> &
// elements,
// const SynchronizationTag & tag) const {
// if (tag == SynchronizationTag::_user_1) {
// for (const auto & el : elements) {
// buffer << this->stresses(el.element);
// }
// }
// }
// void unpackData(CommunicationBuffer & buffer, const Array<Element> &
// elements,
// const SynchronizationTag & tag) {
// if (tag == SynchronizationTag::_user_1) {
// auto cit = this->mesh.getConnectivity(_segment_2, _ghost).begin(2);
// for (const auto & el : elements) {
// Real stress;
// buffer >> stress;
// Real f = A * stress;
// Vector<UInt> conn = cit[el.element];
// this->internal_forces(conn(0), _x) += -f;
// this->internal_forces(conn(1), _x) += f;
// }
// }
// }
Real getExternalWorkIncrement() {
std::cout << "getExternalWorkIncrement" << std::endl;
return 0.;
}
template <class Functor> void applyBC(Functor && func, const ID & group_id) {
auto & group = mesh.getElementGroup(group_id).getNodeGroup().getNodes();
auto blocked_dofs = make_view(blocked, 1).begin();
auto disps = make_view(displacement, 1).begin();
auto poss = make_view(mesh.getNodes(), 1).begin();
for (auto && node : group) {
auto disp = Vector<Real>(disps[node]);
auto pos = Vector<Real>(poss[node]);
auto flags = Vector<bool>(blocked_dofs[node]);
func(node, flags, disp, pos);
}
}
const Mesh & getMesh() const { return mesh; }
UInt getSpatialDimension() const { return 1; }
auto & getBlockedDOFs() { return blocked; }
void setTimeStep(Real dt) {
std::cout << "setTimeStep" << std::endl;
this->dt = dt;
}
private:
PetscErrorCode ierr{0};
MPI_Comm mpi_comm;
ISLocalToGlobalMapping petsc_local_to_global;
UInt nb_dofs;
UInt nb_elements;
bool lumped;
bool is_stiffness_assembled{false};
bool is_mass_assembled{false};
bool is_lumped_mass_assembled{false};
Mat K{nullptr}, J{nullptr}, M{nullptr};
Vec rhs{nullptr}, x{nullptr}, x_save{nullptr}, dx{nullptr}, f_int{nullptr},
f_dirichlet{nullptr};
SNES snes;
Real dt{0};
Array<Real> save_displacement;
public:
Real E, A, rho;
Mesh & mesh;
Array<Real> displacement;
Array<Real> velocity;
Array<Real> acceleration;
Array<bool> blocked;
Array<Real> forces;
Array<Real> internal_forces;
Array<Real> stresses;
Array<Real> strains;
Array<Real> initial_lengths;
};
/* -------------------------------------------------------------------------- */
class Sinusoidal : public BC::Dirichlet::DirichletFunctor {
public:
Sinusoidal(MyModel & model, Real amplitude, Real pulse_width, Real t)
: model(model), A(amplitude), k(2 * M_PI / pulse_width),
t(t), v{std::sqrt(model.E / model.rho)} {}
void operator()(UInt n, Vector<bool> & /*flags*/, Vector<Real> & disp,
const Vector<Real> & coord) const {
auto x = coord(_x);
model.velocity(n, _x) = k * v * A * sin(k * (x - v * t));
disp(_x) = A * cos(k * (x - v * t));
}
private:
MyModel & model;
Real A{1.};
Real k{2 * M_PI};
Real t{1.};
Real v{1.};
};
/* -------------------------------------------------------------------------- */
int main(int argc, char * argv[]) {
initialize(argc, argv);
PetscInitialize(&argc, &argv, nullptr, nullptr);
UInt prank = Communicator::getStaticCommunicator().whoAmI();
UInt global_nb_nodes = 3;
UInt max_steps = 400;
Real time_step = 0.001;
Mesh mesh(1);
Real F = -9.81;
bool _explicit = EXPLICIT;
// const Real pulse_width = 0.2;
const Real A = 0.01;
if (prank == 0)
genMesh(mesh, global_nb_nodes);
mesh.distribute();
// mesh.makePeriodic(_x);
MyModel model(F, mesh, _explicit);
// model.forces.zero();
// model.blocked.zero();
// model.applyBC(Sinusoidal(model, A, pulse_width, 0.), "all");
// model.applyBC(BC::Dirichlet::FlagOnly(_x), "border");
// if (!_explicit) {
// model.getNewSolver("dynamic", TimeStepSolverType::_dynamic,
// NonLinearSolverType::_newton_raphson);
// model.setIntegrationScheme("dynamic", "disp",
// IntegrationSchemeType::_trapezoidal_rule_2,
// IntegrationScheme::_displacement);
// } else {
// model.getNewSolver("dynamic", TimeStepSolverType::_dynamic_lumped,
// NonLinearSolverType::_lumped);
// model.setIntegrationScheme("dynamic", "disp",
// IntegrationSchemeType::_central_difference,
// IntegrationScheme::_acceleration);
// }
model.setTimeStep(time_step);
if (prank == 0) {
std::cout << std::scientific;
std::cout << std::setw(14) << "time"
<< "," << std::setw(14) << "wext"
<< "," << std::setw(14) << "epot"
<< "," << std::setw(14) << "ekin"
<< "," << std::setw(14) << "total"
<< "," << std::setw(14) << "max_disp"
<< "," << std::setw(14) << "min_disp" << std::endl;
}
Real wext = 0.;
// model.getDOFManager().clearResidual();
// model.assembleResidual();
Real epot = 0; // model.getPotentialEnergy();
Real ekin = 0; // model.getKineticEnergy();
Real einit = ekin + epot;
Real etot = ekin + epot - wext - einit;
Real max_disp = 0., min_disp = 0.;
for (auto && disp : model.displacement) {
max_disp = std::max(max_disp, disp);
min_disp = std::min(min_disp, disp);
}
if (prank == 0) {
std::cout << std::setw(14) << 0. << "," << std::setw(14) << wext << ","
<< std::setw(14) << epot << "," << std::setw(14) << ekin << ","
<< std::setw(14) << etot << "," << std::setw(14) << max_disp
<< "," << std::setw(14) << min_disp << std::endl;
}
// #if EXPLICIT == false
// NonLinearSolver & solver =
// model.getDOFManager().getNonLinearSolver("dynamic");
// solver.set("max_iterations", 20);
// #endif
auto * dumper = new DumperParaview("dynamic", "./paraview");
mesh.registerExternalDumper(*dumper, "dynamic", true);
mesh.addDumpMesh(mesh);
mesh.addDumpFieldExternalToDumper("dynamic", "displacement",
model.displacement);
mesh.addDumpFieldExternalToDumper("dynamic", "velocity", model.velocity);
mesh.addDumpFieldExternalToDumper("dynamic", "forces", model.forces);
mesh.addDumpFieldExternalToDumper("dynamic", "acceleration",
model.acceleration);
mesh.dump();
max_steps = 1;
for (UInt i = 1; i < max_steps + 1; ++i) {
// model.applyBC(Sinusoidal(model, A, pulse_width, time_step * (i - 1)),
// "border");
model.solveStep();
mesh.dump();
epot = model.getPotentialEnergy();
ekin = model.getKineticEnergy();
wext += model.getExternalWorkIncrement();
etot = ekin + epot - wext - einit;
Real max_disp = 0., min_disp = 0.;
for (auto && disp : model.displacement) {
max_disp = std::max(max_disp, disp);
min_disp = std::min(min_disp, disp);
}
if (prank == 0) {
std::cout << std::setw(14) << time_step * i << "," << std::setw(14)
<< wext << "," << std::setw(14) << epot << "," << std::setw(14)
<< ekin << "," << std::setw(14) << etot << "," << std::setw(14)
<< max_disp << "," << std::setw(14) << min_disp << std::endl;
}
}
// output.close();
// finalize();
// PetscFinalize();
return EXIT_SUCCESS;
}
/* -------------------------------------------------------------------------- */
void genMesh(Mesh & mesh, UInt nb_nodes) {
MeshAccessor mesh_accessor(mesh);
Array<Real> & nodes = mesh_accessor.getNodes();
Array<UInt> & conn = mesh_accessor.getConnectivity(_segment_2);
nodes.resize(nb_nodes);
// auto & all = mesh.createNodeGroup("all_nodes");
for (UInt n = 0; n < nb_nodes; ++n) {
nodes(n, _x) = n * (1. / (nb_nodes - 1));
// all.add(n);
}
// mesh.createElementGroupFromNodeGroup("all", "all_nodes");
conn.resize(nb_nodes - 1);
for (UInt n = 0; n < nb_nodes - 1; ++n) {
conn(n, 0) = n;
conn(n, 1) = n + 1;
}
// Array<UInt> & conn_points = mesh_accessor.getConnectivity(_point_1);
// conn_points.resize(2);
// conn_points(0, 0) = 0;
// conn_points(1, 0) = nb_nodes - 1;
// auto & border = mesh.createElementGroup("border", 0);
// border.add({_point_1, 0, _not_ghost}, true);
// border.add({_point_1, 1, _not_ghost}, true);
mesh_accessor.makeReady();
}
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