distributed_synchronizer.cc
No OneTemporary
Actions

Subscribers

None

File Metadata

Created: Fri, Nov 1, 19:20

distributed_synchronizer.cc
View Options

	/**
	* @file distributed_synchronizer.cc
	*
	* @author Dana Christen <dana.christen@epfl.ch>
	* @author Marco Vocialta <marco.vocialta@epfl.ch>
	* @author Nicolas Richart <nicolas.richart@epfl.ch>
	*
	* @date creation: Thu Jun 16 2011
	* @date last modification: Fri Sep 05 2014
	*
	* @brief implementation of a communicator using a static_communicator for real
	* send/receive
	*
	* @section LICENSE
	*
	* Copyright (©) 2010-2012, 2014 EPFL (Ecole Polytechnique Fédérale de Lausanne)
	* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
	*
	* Akantu is free software: you can redistribute it and/or modify it under the
	* terms of the GNU Lesser General Public License as published by the Free
	* Software Foundation, either version 3 of the License, or (at your option) any
	* later version.
	*
	* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
	* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
	* details.
	*
	* You should have received a copy of the GNU Lesser General Public License
	* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
	*
	*/

	/* -------------------------------------------------------------------------- */
	#include "aka_common.hh"
	#include "distributed_synchronizer.hh"
	#include "static_communicator.hh"
	#include "mesh_utils.hh"
	#include "mesh_data.hh"
	#include "element_group.hh"
	/* -------------------------------------------------------------------------- */
	#include <map>
	#include <iostream>
	#include <algorithm>

	#if defined(AKANTU_DEBUG_TOOLS)
	# include "aka_debug_tools.hh"
	#endif

	/* -------------------------------------------------------------------------- */

	__BEGIN_AKANTU__

	/* -------------------------------------------------------------------------- */
	DistributedSynchronizer::DistributedSynchronizer(Mesh & mesh,
	SynchronizerID id,
	MemoryID memory_id) :
	Synchronizer(id, memory_id),
	mesh(mesh),
	prank_to_element("prank_to_element", id)
	{
	AKANTU_DEBUG_IN();

	nb_proc = static_communicator->getNbProc();
	rank = static_communicator->whoAmI();

	send_element = new Array<Element>[nb_proc];
	recv_element = new Array<Element>[nb_proc];

	for (UInt p = 0; p < nb_proc; ++p) {
	std::stringstream sstr; sstr << p;
	send_element[p].setID(id+":send_elements_"+sstr.str());
	recv_element[p].setID(id+":recv_elements_"+sstr.str());
	}

	mesh.registerEventHandler(*this);

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	DistributedSynchronizer::~DistributedSynchronizer() {
	AKANTU_DEBUG_IN();

	for (UInt p = 0; p < nb_proc; ++p) {
	send_element[p].clear();
	recv_element[p].clear();
	}

	delete [] send_element;
	delete [] recv_element;

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	DistributedSynchronizer * DistributedSynchronizer::
	createDistributedSynchronizerMesh(Mesh & mesh,
	const MeshPartition * partition,
	UInt root,
	SynchronizerID id,
	MemoryID memory_id) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
	UInt nb_proc = comm.getNbProc();
	UInt my_rank = comm.whoAmI();

	DistributedSynchronizer & communicator = *(new DistributedSynchronizer(mesh, id, memory_id));

	if(nb_proc == 1) return &communicator;

	UInt * local_connectivity = NULL;
	UInt * local_partitions = NULL;
	Array<UInt> * old_nodes = mesh.getNodesGlobalIdsPointer();
	old_nodes->resize(0);
	Array<Real> * nodes = mesh.getNodesPointer();


	UInt spatial_dimension = nodes->getNbComponent();

	mesh.synchronizeGroupNames();

	/* ------------------------------------------------------------------------ */
	/* Local (rank == root) */
	/* ------------------------------------------------------------------------ */
	if(my_rank == root) {
	AKANTU_DEBUG_ASSERT(partition->getNbPartition() == nb_proc,
	"The number of partition does not match the number of processors: " <<
	partition->getNbPartition() << " != " << nb_proc);

	/**
	* connectivity and communications scheme construction
	*/
	Mesh::type_iterator it = mesh.firstType(_all_dimensions,
	_not_ghost,
	_ek_not_defined);
	Mesh::type_iterator end = mesh.lastType(_all_dimensions,
	_not_ghost,
	_ek_not_defined);
	UInt count = 0;
	/* --- MAIN LOOP ON TYPES --- */
	for(; it != end; ++it) {
	ElementType type = *it;

	UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	UInt nb_element = mesh.getNbElement(*it);
	UInt nb_local_element[nb_proc];
	UInt nb_ghost_element[nb_proc];
	UInt nb_element_to_send[nb_proc];

	memset(nb_local_element, 0, nb_proc*sizeof(UInt));
	memset(nb_ghost_element, 0, nb_proc*sizeof(UInt));
	memset(nb_element_to_send, 0, nb_proc*sizeof(UInt));

	/// \todo change this ugly way to avoid a problem if an element
	/// type is present in the mesh but not in the partitions
	const Array<UInt> * tmp_partition_num = NULL;
	try {
	tmp_partition_num = &partition->getPartition(type, _not_ghost);
	} catch(...) {
	continue;
	}
	const Array<UInt> & partition_num = *tmp_partition_num;

	const CSR<UInt> & ghost_partition = partition->getGhostPartitionCSR()(type, _not_ghost);

	/* -------------------------------------------------------------------- */
	/// constructing the reordering structures
	for (UInt el = 0; el < nb_element; ++el) {
	nb_local_element[partition_num(el)]++;
	for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
	part != ghost_partition.end(el);
	++part) {
	nb_ghost_element[*part]++;
	}
	nb_element_to_send[partition_num(el)] += ghost_partition.getNbCols(el) + 1;
	}

	/// allocating buffers
	UInt * buffers[nb_proc];
	UInt * buffers_tmp[nb_proc];
	for (UInt p = 0; p < nb_proc; ++p) {
	UInt size = nb_nodes_per_element * (nb_local_element[p] +
	nb_ghost_element[p]);
	buffers[p] = new UInt[size];
	buffers_tmp[p] = buffers[p];
	}

	/// copying the local connectivity
	UInt * conn_val = mesh.getConnectivity(type, _not_ghost).storage();
	for (UInt el = 0; el < nb_element; ++el) {
	memcpy(buffers_tmp[partition_num(el)],
	conn_val + el * nb_nodes_per_element,
	nb_nodes_per_element * sizeof(UInt));
	buffers_tmp[partition_num(el)] += nb_nodes_per_element;
	}

	/// copying the connectivity of ghost element
	for (UInt el = 0; el < nb_element; ++el) {
	for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
	part != ghost_partition.end(el);
	++part) {
	UInt proc = *part;
	memcpy(buffers_tmp[proc],
	conn_val + el * nb_nodes_per_element,
	nb_nodes_per_element * sizeof(UInt));
	buffers_tmp[proc] += nb_nodes_per_element;
	}
	}


	/// tag info
	std::vector<std::string> tag_names;
	mesh.getMeshData().getTagNames(tag_names, type);

	UInt nb_tags = tag_names.size();

	/* -------->>>>-SIZE + CONNECTIVITY------------------------------------ */
	/// send all connectivity and ghost information to all processors
	std::vector<CommunicationRequest *> requests;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	UInt size[5];
	size[0] = (UInt) type;
	size[1] = nb_local_element[p];
	size[2] = nb_ghost_element[p];
	size[3] = nb_element_to_send[p];
	size[4] = nb_tags;
	AKANTU_DEBUG_INFO("Sending connectivities informations to proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_SIZES) <<")");
	comm.send(size, 5, p, Tag::genTag(my_rank, count, TAG_SIZES));

	AKANTU_DEBUG_INFO("Sending connectivities to proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_CONNECTIVITY) <<")");
	requests.push_back(comm.asyncSend(buffers[p],
	nb_nodes_per_element * (nb_local_element[p] +
	nb_ghost_element[p]),
	p, Tag::genTag(my_rank, count, TAG_CONNECTIVITY)));
	} else {
	local_connectivity = buffers[p];
	}
	}

	/// create the renumbered connectivity
	AKANTU_DEBUG_INFO("Renumbering local connectivities");
	MeshUtils::renumberMeshNodes(mesh,
	local_connectivity,
	nb_local_element[root],
	nb_ghost_element[root],
	type,
	*old_nodes);

	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();

	for (UInt p = 0; p < nb_proc; ++p) {
	delete [] buffers[p];
	}

	/* -------------------------------------------------------------------- */
	for (UInt p = 0; p < nb_proc; ++p) {
	buffers[p] = new UInt[nb_ghost_element[p] + nb_element_to_send[p]];
	buffers_tmp[p] = buffers[p];
	}

	/// splitting the partition information to send them to processors
	UInt count_by_proc[nb_proc];
	memset(count_by_proc, 0, nb_proc*sizeof(UInt));
	for (UInt el = 0; el < nb_element; ++el) {
	*(buffers_tmp[partition_num(el)]++) = ghost_partition.getNbCols(el);
	UInt i(0);
	for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
	part != ghost_partition.end(el);
	++part, ++i) {
	(buffers_tmp[partition_num(el)]++) = part;
	}
	}

	for (UInt el = 0; el < nb_element; ++el) {
	UInt i(0);
	for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
	part != ghost_partition.end(el);
	++part, ++i) {
	(buffers_tmp[part]++) = partition_num(el);
	}
	}

	/* -------->>>>-PARTITIONS--------------------------------------------- */
	/// last data to compute the communication scheme
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	AKANTU_DEBUG_INFO("Sending partition informations to proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_PARTITIONS) <<")");
	requests.push_back(comm.asyncSend(buffers[p],
	nb_element_to_send[p] + nb_ghost_element[p],
	p, Tag::genTag(my_rank, count, TAG_PARTITIONS)));
	} else {
	local_partitions = buffers[p];
	}
	}

	if(Mesh::getSpatialDimension(type) == mesh.getSpatialDimension()) {
	AKANTU_DEBUG_INFO("Creating communications scheme");
	communicator.fillCommunicationScheme(local_partitions,
	nb_local_element[root],
	nb_ghost_element[root],
	type);
	}

	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();

	for (UInt p = 0; p < nb_proc; ++p) {
	delete [] buffers[p];
	}

	/* -------------------------------------------------------------------- */
	/// send data assossiated to the mesh
	/* -------->>>>-TAGS--------------------------------------------------- */
	synchronizeTagsSend(communicator, root, mesh, nb_tags, type,
	partition_num,
	ghost_partition,
	nb_local_element[root],
	nb_ghost_element[root]);


	/* -------------------------------------------------------------------- */
	/// send data assossiated to groups
	/* -------->>>>-GROUPS------------------------------------------------- */
	synchronizeElementGroups(communicator, root, mesh, type,
	partition_num,
	ghost_partition,
	nb_element);

	++count;
	}

	/* -------->>>>-SIZE----------------------------------------------------- */
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	UInt size[5];
	size[0] = (UInt) _not_defined;
	size[1] = 0;
	size[2] = 0;
	size[3] = 0;
	size[4] = 0;
	AKANTU_DEBUG_INFO("Sending empty connectivities informations to proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_SIZES) <<")");
	comm.send(size, 5, p, Tag::genTag(my_rank, count, TAG_SIZES));
	}
	}

	/* ---------------------------------------------------------------------- */
	/* ---------------------------------------------------------------------- */
	/**
	* Nodes coordinate construction and synchronization
	*/
	std::multimap< UInt, std::pair<UInt, UInt> > nodes_to_proc;
	/// get the list of nodes to send and send them
	Real * local_nodes = NULL;
	UInt nb_nodes_per_proc[nb_proc];
	UInt * nodes_per_proc[nb_proc];

	comm.broadcast(&(mesh.nb_global_nodes), 1, root);

	/* --------<<<<-NB_NODES + NODES----------------------------------------- */
	for (UInt p = 0; p < nb_proc; ++p) {
	UInt nb_nodes = 0;
	// UInt * buffer;
	if(p != root) {
	AKANTU_DEBUG_INFO("Receiving number of nodes from proc " << p << " TAG("<< Tag::genTag(p, 0, TAG_NB_NODES) <<")");
	comm.receive(&nb_nodes, 1, p, Tag::genTag(p, 0, TAG_NB_NODES));
	nodes_per_proc[p] = new UInt[nb_nodes];
	nb_nodes_per_proc[p] = nb_nodes;
	AKANTU_DEBUG_INFO("Receiving list of nodes from proc " << p << " TAG("<< Tag::genTag(p, 0, TAG_NODES) <<")");
	comm.receive(nodes_per_proc[p], nb_nodes, p, Tag::genTag(p, 0, TAG_NODES));
	} else {
	nb_nodes = old_nodes->getSize();
	nb_nodes_per_proc[p] = nb_nodes;
	nodes_per_proc[p] = old_nodes->storage();
	}

	/// get the coordinates for the selected nodes
	Real * nodes_to_send = new Real[nb_nodes * spatial_dimension];
	Real * nodes_to_send_tmp = nodes_to_send;
	for (UInt n = 0; n < nb_nodes; ++n) {
	memcpy(nodes_to_send_tmp,
	nodes->storage() + spatial_dimension * nodes_per_proc[p][n],
	spatial_dimension * sizeof(Real));
	// nodes_to_proc.insert(std::make_pair(buffer[n], std::make_pair(p, n)));
	nodes_to_send_tmp += spatial_dimension;
	}

	/* -------->>>>-COORDINATES-------------------------------------------- */
	if(p != root) { /// send them for distant processors
	AKANTU_DEBUG_INFO("Sending coordinates to proc " << p << " TAG("<< Tag::genTag(my_rank, 0, TAG_COORDINATES) <<")");
	comm.send(nodes_to_send, nb_nodes * spatial_dimension, p, Tag::genTag(my_rank, 0, TAG_COORDINATES));
	delete [] nodes_to_send;
	} else { /// save them for local processor
	local_nodes = nodes_to_send;
	}
	}


	/// construct the local nodes coordinates
	UInt nb_nodes = old_nodes->getSize();
	nodes->resize(nb_nodes);
	memcpy(nodes->storage(), local_nodes, nb_nodes * spatial_dimension * sizeof(Real));
	delete [] local_nodes;

	Array<Int> * nodes_type_per_proc[nb_proc];
	for (UInt p = 0; p < nb_proc; ++p) {
	nodes_type_per_proc[p] = new Array<Int>(nb_nodes_per_proc[p]);
	}

	communicator.fillNodesType(mesh);

	/* --------<<<<-NODES_TYPE-1--------------------------------------------- */
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	AKANTU_DEBUG_INFO("Receiving first nodes types from proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_NODES_TYPE) <<")");
	comm.receive(nodes_type_per_proc[p]->storage(),
	nb_nodes_per_proc[p], p, Tag::genTag(p, 0, TAG_NODES_TYPE));
	} else {
	nodes_type_per_proc[p]->copy(mesh.getNodesType());
	}
	for (UInt n = 0; n < nb_nodes_per_proc[p]; ++n) {
	if((*nodes_type_per_proc[p])(n) == -2)
	nodes_to_proc.insert(std::make_pair(nodes_per_proc[p][n], std::make_pair(p, n)));
	}
	}

	std::multimap< UInt, std::pair<UInt, UInt> >::iterator it_node;
	std::pair< std::multimap< UInt, std::pair<UInt, UInt> >::iterator,
	std::multimap< UInt, std::pair<UInt, UInt> >::iterator > it_range;
	for (UInt i = 0; i < mesh.nb_global_nodes; ++i) {
	it_range = nodes_to_proc.equal_range(i);
	if(it_range.first == nodes_to_proc.end() \|\| it_range.first->first != i) continue;

	UInt node_type = (it_range.first)->second.first;
	for (it_node = it_range.first; it_node != it_range.second; ++it_node) {
	UInt proc = it_node->second.first;
	UInt node = it_node->second.second;
	if(proc != node_type)
	nodes_type_per_proc[proc]->storage()[node] = node_type;
	}
	}

	/* -------->>>>-NODES_TYPE-2--------------------------------------------- */
	std::vector<CommunicationRequest *> requests;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	AKANTU_DEBUG_INFO("Sending nodes types to proc " << p << " TAG("<< Tag::genTag(my_rank, 0, TAG_NODES_TYPE) <<")");
	requests.push_back(comm.asyncSend(nodes_type_per_proc[p]->storage(),
	nb_nodes_per_proc[p], p, Tag::genTag(my_rank, 0, TAG_NODES_TYPE)));
	} else {
	mesh.getNodesTypePointer()->copy(*nodes_type_per_proc[p]);
	}
	}

	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();

	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) delete [] nodes_per_proc[p];
	delete nodes_type_per_proc[p];
	}

	/* -------->>>>-NODE GROUPS --------------------------------------------- */
	synchronizeNodeGroupsMaster(communicator, root, mesh);

	/* ---------------------------------------------------------------------- */
	/* Distant (rank != root) */
	/* ---------------------------------------------------------------------- */
	} else {
	/**
	* connectivity and communications scheme construction on distant processors
	*/
	ElementType type = _not_defined;
	UInt count = 0;
	do {
	/* --------<<<<-SIZE--------------------------------------------------- */
	UInt size[5] = { 0 };
	comm.receive(size, 5, root, Tag::genTag(root, count, TAG_SIZES));

	type = (ElementType) size[0];
	UInt nb_local_element = size[1];
	UInt nb_ghost_element = size[2];
	UInt nb_element_to_send = size[3];
	UInt nb_tags = size[4];

	if(type != _not_defined) {
	UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	/* --------<<<<-CONNECTIVITY----------------------------------------- */
	local_connectivity = new UInt[(nb_local_element + nb_ghost_element) *
	nb_nodes_per_element];
	AKANTU_DEBUG_INFO("Receiving connectivities from proc " << root);
	comm.receive(local_connectivity, nb_nodes_per_element * (nb_local_element +
	nb_ghost_element),
	root, Tag::genTag(root, count, TAG_CONNECTIVITY));

	AKANTU_DEBUG_INFO("Renumbering local connectivities");
	MeshUtils::renumberMeshNodes(mesh,
	local_connectivity,
	nb_local_element,
	nb_ghost_element,
	type,
	*old_nodes);

	delete [] local_connectivity;

	/* --------<<<<-PARTITIONS--------------------------------------------- */
	local_partitions = new UInt[nb_element_to_send + nb_ghost_element * 2];
	AKANTU_DEBUG_INFO("Receiving partition informations from proc " << root);
	comm.receive(local_partitions,
	nb_element_to_send + nb_ghost_element * 2,
	root, Tag::genTag(root, count, TAG_PARTITIONS));

	if(Mesh::getSpatialDimension(type) == mesh.getSpatialDimension()) {
	AKANTU_DEBUG_INFO("Creating communications scheme");
	communicator.fillCommunicationScheme(local_partitions,
	nb_local_element,
	nb_ghost_element,
	type);
	}
	delete [] local_partitions;

	/* --------<<<<-TAGS------------------------------------------------- */
	synchronizeTagsRecv(communicator, root, mesh, nb_tags, type,
	nb_local_element,
	nb_ghost_element);

	/* --------<<<<-GROUPS----------------------------------------------- */
	synchronizeElementGroups(communicator, root, mesh, type);
	}
	++count;
	} while(type != _not_defined);

	/**
	* Nodes coordinate construction and synchronization on distant processors
	*/
	comm.broadcast(&(mesh.nb_global_nodes), 1, root);

	/* -------->>>>-NB_NODES + NODES----------------------------------------- */
	AKANTU_DEBUG_INFO("Sending list of nodes to proc " << root);
	UInt nb_nodes = old_nodes->getSize();
	comm.send(&nb_nodes, 1, root, Tag::genTag(my_rank, 0, TAG_NB_NODES));
	comm.send(old_nodes->storage(), nb_nodes, root, Tag::genTag(my_rank, 0, TAG_NODES));

	/* --------<<<<-COORDINATES---------------------------------------------- */
	nodes->resize(nb_nodes);
	AKANTU_DEBUG_INFO("Receiving coordinates from proc " << root);
	comm.receive(nodes->storage(), nb_nodes * spatial_dimension, root, Tag::genTag(root, 0, TAG_COORDINATES));

	communicator.fillNodesType(mesh);
	/* -------->>>>-NODES_TYPE-1--------------------------------------------- */
	Int * nodes_types = mesh.getNodesTypePointer()->storage();
	AKANTU_DEBUG_INFO("Sending first nodes types to proc " << root);
	comm.send(nodes_types, nb_nodes,
	root, Tag::genTag(my_rank, 0, TAG_NODES_TYPE));

	/* --------<<<<-NODES_TYPE-2--------------------------------------------- */
	AKANTU_DEBUG_INFO("Receiving nodes types from proc " << root);
	comm.receive(nodes_types, nb_nodes,
	root, Tag::genTag(root, 0, TAG_NODES_TYPE));

	/* --------<<<<-NODE GROUPS --------------------------------------------- */
	synchronizeNodeGroupsSlaves(communicator, root, mesh);
	}

	MeshUtils::fillElementToSubElementsData(mesh);

	mesh.is_distributed = true;

	AKANTU_DEBUG_OUT();
	return &communicator;
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::fillTagBuffer(const MeshData & mesh_data,
	DynamicCommunicationBuffer * buffers,
	const std::string & tag_name,
	const ElementType & el_type,
	const Array<UInt> & partition_num,
	const CSR<UInt> & ghost_partition) {
	#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, extra_param, elem) \
	case BOOST_PP_TUPLE_ELEM(2, 0, elem) : { \
	fillTagBufferTemplated<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(mesh_data, buffers, tag_name, el_type, partition_num, ghost_partition); \
	break; \
	} \

	MeshDataTypeCode data_type_code = mesh_data.getTypeCode(tag_name);
	switch(data_type_code) {
	BOOST_PP_SEQ_FOR_EACH(AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA, , AKANTU_MESH_DATA_TYPES)
	default : AKANTU_DEBUG_ERROR("Could not obtain the type of tag" << tag_name << "!"); break;
	}
	#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::fillNodesType(Mesh & mesh) {
	AKANTU_DEBUG_IN();

	UInt nb_nodes = mesh.getNbNodes();
	Int * nodes_type = mesh.getNodesTypePointer()->storage();

	UInt * nodes_set = new UInt[nb_nodes];
	std::fill_n(nodes_set, nb_nodes, 0);

	const UInt NORMAL_SET = 1;
	const UInt GHOST_SET = 2;

	bool * already_seen = new bool[nb_nodes];

	for(UInt g = _not_ghost; g <= _ghost; ++g) {
	GhostType gt = (GhostType) g;
	UInt set = NORMAL_SET;
	if (gt == _ghost) set = GHOST_SET;

	std::fill_n(already_seen, nb_nodes, false);
	Mesh::type_iterator it = mesh.firstType(_all_dimensions, gt, _ek_not_defined);
	Mesh::type_iterator end = mesh.lastType(_all_dimensions, gt, _ek_not_defined);
	for(; it != end; ++it) {
	ElementType type = *it;

	UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
	UInt nb_element = mesh.getNbElement(type, gt);
	Array<UInt>::iterator< Vector<UInt> > conn_it = mesh.getConnectivity(type, gt).begin(nb_nodes_per_element);

	for (UInt e = 0; e < nb_element; ++e, ++conn_it) {
	Vector<UInt> & conn = *conn_it;
	for (UInt n = 0; n < nb_nodes_per_element; ++n) {
	AKANTU_DEBUG_ASSERT(conn(n) < nb_nodes, "Node " << conn(n)
	<< " bigger than number of nodes " << nb_nodes);
	if(!already_seen[conn(n)]) {
	nodes_set[conn(n)] += set;
	already_seen[conn(n)] = true;
	}
	}
	}
	}
	}

	delete [] already_seen;

	for (UInt i = 0; i < nb_nodes; ++i) {
	if(nodes_set[i] == NORMAL_SET) nodes_type[i] = -1;
	else if(nodes_set[i] == GHOST_SET) nodes_type[i] = -3;
	else if(nodes_set[i] == (GHOST_SET + NORMAL_SET)) nodes_type[i] = -2;
	}

	delete [] nodes_set;

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::fillCommunicationScheme(const UInt * partition,
	UInt nb_local_element,
	UInt nb_ghost_element,
	ElementType type) {
	AKANTU_DEBUG_IN();

	Element element;
	element.type = type;
	element.kind = Mesh::getKind(type);

	const UInt * part = partition;

	part = partition;
	for (UInt lel = 0; lel < nb_local_element; ++lel) {
	UInt nb_send = *part; part++;
	element.element = lel;
	element.ghost_type = _not_ghost;
	for (UInt p = 0; p < nb_send; ++p) {
	UInt proc = *part; part++;

	AKANTU_DEBUG(dblAccessory, "Must send : " << element << " to proc " << proc);
	(send_element[proc]).push_back(element);
	}
	}

	for (UInt gel = 0; gel < nb_ghost_element; ++gel) {
	UInt proc = *part; part++;
	element.element = gel;
	element.ghost_type = _ghost;
	AKANTU_DEBUG(dblAccessory, "Must recv : " << element << " from proc " << proc);
	recv_element[proc].push_back(element);
	}

	AKANTU_DEBUG_OUT();
	}


	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::asynchronousSynchronize(DataAccessor & data_accessor,
	SynchronizationTag tag) {
	AKANTU_DEBUG_IN();

	if (communications.find(tag) == communications.end())
	computeBufferSize(data_accessor, tag);

	Communication & communication = communications[tag];

	AKANTU_DEBUG_ASSERT(communication.send_requests.size() == 0,
	"There must be some pending sending communications. Tag is " << tag);

	std::map<SynchronizationTag, UInt>::iterator t_it = tag_counter.find(tag);
	UInt counter = 0;
	if(t_it == tag_counter.end()) {
	tag_counter[tag] = 0;
	} else {
	counter = ++(t_it->second);
	}

	for (UInt p = 0; p < nb_proc; ++p) {
	UInt ssize = communication.size_to_send[p];
	if(p == rank \|\| ssize == 0) continue;

	CommunicationBuffer & buffer = communication.send_buffer[p];
	buffer.resize(ssize);
	#ifndef AKANTU_NDEBUG
	UInt nb_elements = send_element[p].getSize();
	AKANTU_DEBUG_INFO("Packing data for proc " << p
	<< " (" << ssize << "/" << nb_elements
	<<" data to send/elements)");

	/// pack barycenters in debug mode
	Array<Element>::const_iterator<Element> bit = send_element[p].begin();
	Array<Element>::const_iterator<Element> bend = send_element[p].end();
	for (; bit != bend; ++bit) {
	const Element & element = *bit;
	Vector<Real> barycenter(mesh.getSpatialDimension());
	mesh.getBarycenter(element.element, element.type, barycenter.storage(), element.ghost_type);
	buffer << barycenter;
	}
	#endif

	data_accessor.packElementData(buffer, send_element[p], tag);

	AKANTU_DEBUG_ASSERT(buffer.getPackedSize() == ssize,
	"a problem have been introduced with "
	<< "false sent sizes declaration "
	<< buffer.getPackedSize() << " != " << ssize);
	AKANTU_DEBUG_INFO("Posting send to proc " << p
	<< " (tag: " << tag << " - " << ssize << " data to send)"
	<< " [" << Tag::genTag(rank, counter, tag) << "]");
	communication.send_requests.push_back(static_communicator->asyncSend(buffer.storage(),
	ssize,
	p,
	Tag::genTag(rank, counter, tag)));
	}

	AKANTU_DEBUG_ASSERT(communication.recv_requests.size() == 0,
	"There must be some pending receive communications");

	for (UInt p = 0; p < nb_proc; ++p) {
	UInt rsize = communication.size_to_receive[p];
	if(p == rank \|\| rsize == 0) continue;
	CommunicationBuffer & buffer = communication.recv_buffer[p];
	buffer.resize(rsize);

	AKANTU_DEBUG_INFO("Posting receive from proc " << p
	<< " (tag: " << tag << " - " << rsize << " data to receive) "
	<< " [" << Tag::genTag(p, counter, tag) << "]");
	communication.recv_requests.push_back(static_communicator->asyncReceive(buffer.storage(),
	rsize,
	p,
	Tag::genTag(p, counter, tag)));
	}


	#if defined(AKANTU_DEBUG_TOOLS) && defined(AKANTU_CORE_CXX11)
	static std::set<SynchronizationTag> tags;
	if(tags.find(tag) == tags.end()) {
	debug::element_manager.print(debug::_dm_synch,
	[&send_element, rank, nb_proc, tag, id](const Element & el)->std::string {
	std::stringstream out;
	UInt elp = 0;
	for (UInt p = 0; p < nb_proc; ++p) {
	UInt pos = send_element[p].find(el);
	if(pos != UInt(-1)) {
	if(elp > 0) out << std::endl;
	out << id << " send (" << pos << "/" << send_element[p].getSize() << ") to proc " << p << " tag:" << tag;
	++elp;
	}
	}
	return out.str();
	});

	debug::element_manager.print(debug::_dm_synch,
	[&recv_element, rank, nb_proc, tag, id](const Element & el)->std::string {
	std::stringstream out;
	UInt elp = 0;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p == rank) continue;
	UInt pos = recv_element[p].find(el);
	if(pos != UInt(-1)) {
	if(elp > 0) out << std::endl;
	out << id << " recv (" << pos << "/" << recv_element[p].getSize() << ") from proc " << p << " tag:" << tag;
	++elp;
	}
	}
	return out.str();
	});
	tags.insert(tag);
	}
	#endif


	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::waitEndSynchronize(DataAccessor & data_accessor,
	SynchronizationTag tag) {
	AKANTU_DEBUG_IN();

	AKANTU_DEBUG_ASSERT(communications.find(tag) != communications.end(), "No communication with the tag \""
	<< tag <<"\" started");

	Communication & communication = communications[tag];

	std::vector<CommunicationRequest *> req_not_finished;
	std::vector<CommunicationRequest > req_not_finished_tmp = &req_not_finished;
	std::vector<CommunicationRequest > recv_requests_tmp = &(communication.recv_requests);

	// static_communicator->waitAll(recv_requests);
	while(!recv_requests_tmp->empty()) {
	for (std::vector<CommunicationRequest *>::iterator req_it = recv_requests_tmp->begin();
	req_it != recv_requests_tmp->end() ; ++req_it) {
	CommunicationRequest * req = *req_it;

	if(static_communicator->testRequest(req)) {
	UInt proc = req->getSource();
	AKANTU_DEBUG_INFO("Unpacking data coming from proc " << proc);
	CommunicationBuffer & buffer = communication.recv_buffer[proc];

	#ifndef AKANTU_NDEBUG
	Array<Element>::const_iterator<Element> bit = recv_element[proc].begin();
	Array<Element>::const_iterator<Element> bend = recv_element[proc].end();

	UInt spatial_dimension = mesh.getSpatialDimension();

	for (; bit != bend; ++bit) {
	const Element & element = *bit;

	Vector<Real> barycenter_loc(spatial_dimension);
	mesh.getBarycenter(element.element,
	element.type,
	barycenter_loc.storage(),
	element.ghost_type);
	Vector<Real> barycenter(spatial_dimension);
	buffer >> barycenter;
	Real tolerance = Math::getTolerance();
	Real bary_norm = barycenter.norm();
	for (UInt i = 0; i < spatial_dimension; ++i) {
	if((std::abs((barycenter(i) - barycenter_loc(i))/bary_norm) <= tolerance) \|\|
	(std::abs(barycenter_loc(i)) <= tolerance && std::abs(barycenter(i)) <= tolerance)) continue;
	AKANTU_DEBUG_ERROR("Unpacking an unknown value for the element: "
	<< element
	<< "(barycenter[" << i << "] = " << barycenter_loc(i)
	<< " and buffer[" << i << "] = " << barycenter(i) << ") ["
	<< std::abs((barycenter(i) - barycenter_loc(i))/barycenter_loc(i))
	<< "] - tag: " << tag);
	}
	}
	#endif

	data_accessor.unpackElementData(buffer, recv_element[proc], tag);
	buffer.resize(0);

	AKANTU_DEBUG_ASSERT(buffer.getLeftToUnpack() == 0,
	"all data have not been unpacked: "
	<< buffer.getLeftToUnpack() << " bytes left");
	static_communicator->freeCommunicationRequest(req);
	} else {
	req_not_finished_tmp->push_back(req);
	}
	}

	std::vector<CommunicationRequest > swap = req_not_finished_tmp;
	req_not_finished_tmp = recv_requests_tmp;
	recv_requests_tmp = swap;

	req_not_finished_tmp->clear();
	}


	AKANTU_DEBUG_INFO("Waiting that every send requests are received");
	static_communicator->waitAll(communication.send_requests);
	for (std::vector<CommunicationRequest *>::iterator req_it = communication.send_requests.begin();
	req_it != communication.send_requests.end() ; ++req_it) {
	CommunicationRequest & req = (req_it);

	if(static_communicator->testRequest(&req)) {
	UInt proc = req.getDestination();
	CommunicationBuffer & buffer = communication.send_buffer[proc];
	buffer.resize(0);
	static_communicator->freeCommunicationRequest(&req);
	}
	}
	communication.send_requests.clear();

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::computeBufferSize(DataAccessor & data_accessor,
	SynchronizationTag tag) {
	AKANTU_DEBUG_IN();

	communications[tag].resize(nb_proc);

	for (UInt p = 0; p < nb_proc; ++p) {
	UInt ssend = 0;
	UInt sreceive = 0;
	if(p != rank) {
	if(send_element[p].getSize() != 0) {
	#ifndef AKANTU_NDEBUG
	ssend += send_element[p].getSize() * mesh.getSpatialDimension() * sizeof(Real);
	#endif
	ssend += data_accessor.getNbDataForElements(send_element[p], tag);
	AKANTU_DEBUG_INFO("I have " << ssend << "(" << ssend / 1024.
	<< "kB - "<< send_element[p].getSize() <<" element(s)) data to send to " << p << " for tag "
	<< tag);
	}

	if(recv_element[p].getSize() != 0) {
	#ifndef AKANTU_NDEBUG
	sreceive += recv_element[p].getSize() * mesh.getSpatialDimension() * sizeof(Real);
	#endif
	sreceive += data_accessor.getNbDataForElements(recv_element[p], tag);
	AKANTU_DEBUG_INFO("I have " << sreceive << "(" << sreceive / 1024.
	<< "kB - "<< recv_element[p].getSize() <<" element(s)) data to receive for tag "
	<< tag);
	}
	}

	communications[tag].size_to_send [p] = ssend;
	communications[tag].size_to_receive[p] = sreceive;
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::computeAllBufferSizes(DataAccessor & data_accessor) {
	std::map<SynchronizationTag, Communication>::iterator it = this->communications.begin();
	std::map<SynchronizationTag, Communication>::iterator end = this->communications.end();

	for (; it != end; ++it) {
	SynchronizationTag tag = it->first;
	this->computeBufferSize(data_accessor, tag);
	}

	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::printself(std::ostream & stream, int indent) const {
	std::string space;
	for(Int i = 0; i < indent; i++, space += AKANTU_INDENT);

	Int prank = StaticCommunicator::getStaticCommunicator().whoAmI();
	Int psize = StaticCommunicator::getStaticCommunicator().getNbProc();
	stream << "[" << prank << "/" << psize << "]" << space << "DistributedSynchronizer [" << std::endl;
	for (UInt p = 0; p < nb_proc; ++p) {
	if (p == UInt(prank)) continue;
	stream << "[" << prank << "/" << psize << "]" << space
	<< " + Communication to proc " << p << " [" << std::endl;
	if(AKANTU_DEBUG_TEST(dblDump)) {
	stream << "[" << prank << "/" << psize << "]" << space
	<< " - Element to send to proc " << p << " [" << std::endl;

	Array<Element>::iterator<Element> it_el = send_element[p].begin();
	Array<Element>::iterator<Element> end_el = send_element[p].end();
	for(;it_el != end_el; ++it_el)
	stream << "[" << prank << "/" << psize << "]" << space << " " << *it_el << std::endl;
	stream << "[" << prank << "/" << psize << "]" << space << " ]" << std::endl;

	stream << "[" << prank << "/" << psize << "]" << space
	<< " - Element to recv from proc " << p << " [" << std::endl;

	it_el = recv_element[p].begin();
	end_el = recv_element[p].end();
	for(;it_el != end_el; ++it_el)
	stream << "[" << prank << "/" << psize << "]"
	<< space << " " << *it_el << std::endl;

	stream << "[" << prank << "/" << psize << "]" << space << " ]" << std::endl;
	}

	std::map< SynchronizationTag, Communication>::const_iterator it = communications.begin();
	std::map< SynchronizationTag, Communication>::const_iterator end = communications.end();
	for (; it != end; ++it) {
	const SynchronizationTag & tag = it->first;
	const Communication & communication = it->second;
	UInt ssend = communication.size_to_send[p];
	UInt sreceive = communication.size_to_receive[p];
	stream << "[" << prank << "/" << psize << "]" << space << " - Tag " << tag << " -> " << ssend << "byte(s) -- <- " << sreceive << "byte(s)" << std::endl;
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::onElementsRemoved(const Array<Element> & element_to_remove,
	const ElementTypeMapArray<UInt> & new_numbering,
	__attribute__((unused)) const RemovedElementsEvent & event) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
	UInt psize = comm.getNbProc();
	UInt prank = comm.whoAmI();

	std::vector<CommunicationRequest *> isend_requests;
	Array<UInt> * list_of_el = new Array<UInt>[nb_proc];
	// Handling ghost elements
	for (UInt p = 0; p < psize; ++p) {
	if (p == prank) continue;

	Array<Element> & recv = recv_element[p];
	if(recv.getSize() == 0) continue;

	Array<Element>::iterator<Element> recv_begin = recv.begin();
	Array<Element>::iterator<Element> recv_end = recv.end();

	Array<Element>::const_iterator<Element> er_it = element_to_remove.begin();
	Array<Element>::const_iterator<Element> er_end = element_to_remove.end();

	Array<UInt> & list = list_of_el[p];
	for (UInt i = 0; recv_begin != recv_end; ++i, ++recv_begin) {
	const Element & el = *recv_begin;
	Array<Element>::const_iterator<Element> pos = std::find(er_it, er_end, el);
	if(pos == er_end) {
	list.push_back(i);
	}
	}

	if(list.getSize() == recv.getSize())
	list.push_back(UInt(0));
	else list.push_back(UInt(-1));

	AKANTU_DEBUG_INFO("Sending a message of size " << list.getSize() << " to proc " << p << " TAG(" << Tag::genTag(prank, 0, 0) << ")");
	isend_requests.push_back(comm.asyncSend(list.storage(), list.getSize(),
	p, Tag::genTag(prank, 0, 0)));

	list.erase(list.getSize() - 1);
	if(list.getSize() == recv.getSize()) continue;

	Array<Element> new_recv;
	for (UInt nr = 0; nr < list.getSize(); ++nr) {
	Element & el = recv(list(nr));
	el.element = new_numbering(el.type, el.ghost_type)(el.element);
	new_recv.push_back(el);
	}

	AKANTU_DEBUG_INFO("I had " << recv.getSize() << " elements to recv from proc " << p << " and "
	<< list.getSize() << " elements to keep. I have "
	<< new_recv.getSize() << " elements left.");
	recv.copy(new_recv);
	}

	for (UInt p = 0; p < psize; ++p) {
	if (p == prank) continue;
	Array<Element> & send = send_element[p];

	if(send.getSize() == 0) continue;

	CommunicationStatus status;
	AKANTU_DEBUG_INFO("Getting number of elements of proc " << p << " not needed anymore TAG("<< Tag::genTag(p, 0, 0) <<")");
	comm.probe<UInt>(p, Tag::genTag(p, 0, 0), status);
	Array<UInt> list(status.getSize());

	AKANTU_DEBUG_INFO("Receiving list of elements (" << status.getSize() - 1
	<< " elements) no longer needed by proc " << p
	<< " TAG("<< Tag::genTag(p, 0, 0) <<")");
	comm.receive(list.storage(), list.getSize(),
	p, Tag::genTag(p, 0, 0));

	if(list.getSize() == 1 && list(0) == 0) continue;

	list.erase(list.getSize() - 1);

	Array<Element> new_send;
	for (UInt ns = 0; ns < list.getSize(); ++ns) {
	new_send.push_back(send(list(ns)));
	}

	AKANTU_DEBUG_INFO("I had " << send.getSize() << " elements to send to proc " << p << " and "
	<< list.getSize() << " elements to keep. I have "
	<< new_send.getSize() << " elements left.");
	send.copy(new_send);
	}

	comm.waitAll(isend_requests);
	comm.freeCommunicationRequest(isend_requests);

	delete [] list_of_el;
	AKANTU_DEBUG_OUT();
	}


	// void DistributedSynchronizer::checkCommunicationScheme() {
	// for (UInt p = 0; p < psize; ++p) {
	// if (p == prank) continue;
	// for(UInt e(0), e < recv_element.getSize())
	// }
	// }

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::buildPrankToElement() {
	AKANTU_DEBUG_IN();

	UInt spatial_dimension = mesh.getSpatialDimension();

	mesh.initElementTypeMapArray(prank_to_element,
	1,
	spatial_dimension,
	false,
	_ek_not_defined,
	true);

	Mesh::type_iterator it = mesh.firstType(spatial_dimension,
	_not_ghost,
	_ek_not_defined);

	Mesh::type_iterator end = mesh.lastType(spatial_dimension,
	_not_ghost,
	_ek_not_defined);

	/// assign prank to all not ghost elements
	for (; it != end; ++it) {
	UInt nb_element = mesh.getNbElement(*it);
	Array<UInt> & prank_to_el = prank_to_element(*it);
	for (UInt el = 0; el < nb_element; ++el) {
	prank_to_el(el) = rank;
	}
	}

	/// assign prank to all ghost elements
	for (UInt p = 0; p < nb_proc; ++p) {
	UInt nb_ghost_element = recv_element[p].getSize();

	for (UInt el = 0; el < nb_ghost_element; ++el) {
	UInt element = recv_element[p](el).element;
	ElementType type = recv_element[p](el).type;
	GhostType ghost_type = recv_element[p](el).ghost_type;

	Array<UInt> & prank_to_el = prank_to_element(type, ghost_type);
	prank_to_el(element) = p;
	}
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::filterElementsByKind(DistributedSynchronizer * new_synchronizer,
	ElementKind kind) {
	AKANTU_DEBUG_IN();

	Array<Element> * newsy_send_element = new_synchronizer->send_element;
	Array<Element> * newsy_recv_element = new_synchronizer->recv_element;

	Array<Element> * new_send_element = new Array<Element>[nb_proc];
	Array<Element> * new_recv_element = new Array<Element>[nb_proc];

	for (UInt p = 0; p < nb_proc; ++p) {

	/// send element copying part
	new_send_element[p].resize(0);

	for (UInt el = 0; el < send_element[p].getSize(); ++el) {
	Element & element = send_element[p](el);

	if (element.kind == kind)
	newsy_send_element[p].push_back(element);
	else
	new_send_element[p].push_back(element);
	}

	/// recv element copying part
	new_recv_element[p].resize(0);

	for (UInt el = 0; el < recv_element[p].getSize(); ++el) {
	Element & element = recv_element[p](el);

	if (element.kind == kind)
	newsy_recv_element[p].push_back(element);
	else
	new_recv_element[p].push_back(element);
	}
	}

	/// deleting and reassigning old pointers
	delete [] send_element;
	delete [] recv_element;

	send_element = new_send_element;
	recv_element = new_recv_element;

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::reset() {
	AKANTU_DEBUG_IN();

	for (UInt p = 0; p < nb_proc; ++p) {
	send_element[p].resize(0);
	recv_element[p].resize(0);
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeTagsSend(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh,
	UInt nb_tags,
	const ElementType & type,
	const Array<UInt> & partition_num,
	const CSR<UInt> & ghost_partition,
	UInt nb_local_element,
	UInt nb_ghost_element) {
	AKANTU_DEBUG_IN();

	static UInt count = 0;

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
	UInt nb_proc = comm.getNbProc();
	UInt my_rank = comm.whoAmI();

	if(nb_tags == 0) {
	AKANTU_DEBUG_OUT();
	return;
	}

	UInt mesh_data_sizes_buffer_length;
	MeshData & mesh_data = mesh.getMeshData();

	/// tag info
	std::vector<std::string> tag_names;
	mesh.getMeshData().getTagNames(tag_names, type);
	// Make sure the tags are sorted (or at least not in random order),
	// because they come from a map !!
	std::sort(tag_names.begin(), tag_names.end());


	// Sending information about the tags in mesh_data: name, data type and
	// number of components of the underlying array associated to the current type
	DynamicCommunicationBuffer mesh_data_sizes_buffer;
	std::vector<std::string>::const_iterator names_it = tag_names.begin();
	std::vector<std::string>::const_iterator names_end = tag_names.end();
	for(;names_it != names_end; ++names_it) {
	mesh_data_sizes_buffer << *names_it;
	mesh_data_sizes_buffer << mesh_data.getTypeCode(*names_it);
	mesh_data_sizes_buffer << mesh_data.getNbComponent(*names_it, type);
	}

	mesh_data_sizes_buffer_length = mesh_data_sizes_buffer.getSize();
	AKANTU_DEBUG_INFO("Broadcasting the size of the information about the mesh data tags: (" << mesh_data_sizes_buffer_length << ")." );
	comm.broadcast(&mesh_data_sizes_buffer_length, 1, root);
	AKANTU_DEBUG_INFO("Broadcasting the information about the mesh data tags, addr " << (void*)mesh_data_sizes_buffer.storage());

	if(mesh_data_sizes_buffer_length !=0)
	comm.broadcast(mesh_data_sizes_buffer.storage(), mesh_data_sizes_buffer.getSize(), root);


	if(mesh_data_sizes_buffer_length !=0) {
	//Sending the actual data to each processor
	DynamicCommunicationBuffer buffers[nb_proc];
	std::vector<std::string>::const_iterator names_it = tag_names.begin();
	std::vector<std::string>::const_iterator names_end = tag_names.end();

	// Loop over each tag for the current type
	for(;names_it != names_end; ++names_it) {
	// Type code of the current tag (i.e. the tag named *names_it)
	communicator.fillTagBuffer(mesh_data,
	buffers,
	*names_it,
	type,
	partition_num,
	ghost_partition);
	}

	std::vector<CommunicationRequest *> requests;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p != root) {
	AKANTU_DEBUG_INFO("Sending " << buffers[p].getSize() << " bytes of mesh data to proc " << p << " TAG("<< Tag::genTag(my_rank, count, TAG_MESH_DATA) <<")");

	requests.push_back(comm.asyncSend(buffers[p].storage(),
	buffers[p].getSize(), p, Tag::genTag(my_rank, count, TAG_MESH_DATA)));
	}
	}

	names_it = tag_names.begin();
	// Loop over each tag for the current type
	for(;names_it != names_end; ++names_it) {
	// Reinitializing the mesh data on the master
	communicator.populateMeshData(mesh_data,
	buffers[root],
	*names_it,
	type,
	mesh_data.getTypeCode(*names_it),
	mesh_data.getNbComponent(*names_it, type),
	nb_local_element,
	nb_ghost_element);
	}


	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();
	}

	++count;

	AKANTU_DEBUG_OUT();
	}



	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeTagsRecv(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh,
	UInt nb_tags,
	const ElementType & type,
	UInt nb_local_element,
	UInt nb_ghost_element) {
	AKANTU_DEBUG_IN();

	static UInt count = 0;

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();

	if(nb_tags == 0) {
	AKANTU_DEBUG_OUT();
	return;
	}

	/* --------<<<<-TAGS------------------------------------------------- */
	UInt mesh_data_sizes_buffer_length = 0;
	CommunicationBuffer mesh_data_sizes_buffer;
	MeshData & mesh_data = mesh.getMeshData();

	AKANTU_DEBUG_INFO("Receiving the size of the information about the mesh data tags.");
	comm.broadcast(&mesh_data_sizes_buffer_length, 1, root);

	if(mesh_data_sizes_buffer_length != 0) {
	mesh_data_sizes_buffer.resize(mesh_data_sizes_buffer_length);
	AKANTU_DEBUG_INFO("Receiving the information about the mesh data tags, addr " << (void*)mesh_data_sizes_buffer.storage());
	comm.broadcast(mesh_data_sizes_buffer.storage(), mesh_data_sizes_buffer_length, root);
	AKANTU_DEBUG_INFO("Size of the information about the mesh data: " << mesh_data_sizes_buffer_length);

	std::vector<std::string> tag_names;
	std::vector<MeshDataTypeCode> tag_type_codes;
	std::vector<UInt> tag_nb_component;
	tag_names.resize(nb_tags);
	tag_type_codes.resize(nb_tags);
	tag_nb_component.resize(nb_tags);
	CommunicationBuffer mesh_data_buffer;
	UInt type_code_int;
	for(UInt i(0); i < nb_tags; ++i) {
	mesh_data_sizes_buffer >> tag_names[i];
	mesh_data_sizes_buffer >> type_code_int;
	tag_type_codes[i] = static_cast<MeshDataTypeCode>(type_code_int);
	mesh_data_sizes_buffer >> tag_nb_component[i];
	}

	std::vector<std::string>::const_iterator names_it = tag_names.begin();
	std::vector<std::string>::const_iterator names_end = tag_names.end();

	CommunicationStatus mesh_data_comm_status;
	AKANTU_DEBUG_INFO("Checking size of data to receive for mesh data TAG("
	<< Tag::genTag(root, count, TAG_MESH_DATA) << ")");
	comm.probe<char>(root, Tag::genTag(root, count, TAG_MESH_DATA), mesh_data_comm_status);
	UInt mesh_data_buffer_size(mesh_data_comm_status.getSize());
	AKANTU_DEBUG_INFO("Receiving " << mesh_data_buffer_size
	<< " bytes of mesh data TAG("
	<< Tag::genTag(root, count, TAG_MESH_DATA) << ")");
	mesh_data_buffer.resize(mesh_data_buffer_size);
	comm.receive(mesh_data_buffer.storage(),
	mesh_data_buffer_size,
	root,
	Tag::genTag(root, count, TAG_MESH_DATA));

	// Loop over each tag for the current type
	UInt k(0);
	for(; names_it != names_end; ++names_it, ++k) {
	communicator.populateMeshData(mesh_data, mesh_data_buffer,
	*names_it, type,
	tag_type_codes[k],
	tag_nb_component[k],
	nb_local_element, nb_ghost_element);
	}
	}

	++count;

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	template<class CommunicationBuffer>
	void DistributedSynchronizer::fillElementGroupsFromBuffer(DistributedSynchronizer & communicator,
	Mesh & mesh,
	const ElementType & type,
	CommunicationBuffer & buffer) {
	AKANTU_DEBUG_IN();

	Element el;
	el.type = type;

	for (ghost_type_t::iterator gt = ghost_type_t::begin(); gt != ghost_type_t::end(); ++gt) {
	UInt nb_element = mesh.getNbElement(type, *gt);
	el.ghost_type = *gt;

	for (UInt e = 0; e < nb_element; ++e) {
	el.element = e;

	std::vector<std::string> element_to_group;
	buffer >> element_to_group;

	AKANTU_DEBUG_ASSERT(e < mesh.getNbElement(type, *gt), "The mesh does not have the element " << e);

	std::vector<std::string>::iterator it = element_to_group.begin();
	std::vector<std::string>::iterator end = element_to_group.end();
	for (; it != end; ++it) {
	mesh.getElementGroup(*it).add(el, false, false);
	}
	}
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeElementGroups(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh,
	const ElementType & type,
	const Array<UInt> & partition_num,
	const CSR<UInt> & ghost_partition,
	UInt nb_element) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();

	UInt nb_proc = comm.getNbProc();
	UInt my_rank = comm.whoAmI();

	DynamicCommunicationBuffer buffers[nb_proc];

	typedef std::vector< std::vector<std::string> > ElementToGroup;
	ElementToGroup element_to_group;
	element_to_group.resize(nb_element);

	GroupManager::const_element_group_iterator egi = mesh.element_group_begin();
	GroupManager::const_element_group_iterator ege = mesh.element_group_end();
	for (; egi != ege; ++egi) {
	ElementGroup & eg = *(egi->second);

	std::string name = egi->first;

	ElementGroup::const_element_iterator eit = eg.element_begin(type, _not_ghost);
	ElementGroup::const_element_iterator eend = eg.element_end(type, _not_ghost);
	for (; eit != eend; ++eit) {
	element_to_group[*eit].push_back(name);
	}

	eit = eg.element_begin(type, _not_ghost);
	if(eit != eend)
	const_cast<Array<UInt> &>(eg.getElements(type)).empty();
	}

	/// preparing the buffers
	const UInt * part = partition_num.storage();

	/// copying the data, element by element
	ElementToGroup::const_iterator data_it = element_to_group.begin();
	ElementToGroup::const_iterator data_end = element_to_group.end();
	for (; data_it != data_end; ++part, ++data_it) {
	buffers[part] << data_it;
	}

	data_it = element_to_group.begin();
	/// copying the data for the ghost element
	for (UInt el(0); data_it != data_end; ++data_it, ++el) {
	CSR<UInt>::const_iterator it = ghost_partition.begin(el);
	CSR<UInt>::const_iterator end = ghost_partition.end(el);
	for (;it != end; ++it) {
	UInt proc = *it;
	buffers[proc] << *data_it;
	}
	}


	std::vector<CommunicationRequest *> requests;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p == my_rank) continue;
	AKANTU_DEBUG_INFO("Sending element groups to proc " << p
	<< " TAG("<< Tag::genTag(my_rank, p, TAG_ELEMENT_GROUP) <<")");
	requests.push_back(comm.asyncSend(buffers[p].storage(),
	buffers[p].getSize(),
	p,
	Tag::genTag(my_rank, p, TAG_ELEMENT_GROUP)));
	}

	fillElementGroupsFromBuffer(communicator, mesh, type, buffers[my_rank]);

	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();

	AKANTU_DEBUG_OUT();
	}


	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeElementGroups(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh,
	const ElementType & type) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
	UInt my_rank = comm.whoAmI();


	AKANTU_DEBUG_INFO("Receiving element groups from proc " << root
	<< " TAG("<< Tag::genTag(root, my_rank, TAG_ELEMENT_GROUP) <<")");

	CommunicationStatus status;
	comm.probe<char>(root, Tag::genTag(root, my_rank, TAG_ELEMENT_GROUP), status);

	CommunicationBuffer buffer(status.getSize());
	comm.receive(buffer.storage(), buffer.getSize(), root, Tag::genTag(root, my_rank, TAG_ELEMENT_GROUP));

	fillElementGroupsFromBuffer(communicator, mesh, type, buffer);

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	template<class CommunicationBuffer>
	void DistributedSynchronizer::fillNodeGroupsFromBuffer(DistributedSynchronizer & communicator,
	Mesh & mesh,
	CommunicationBuffer & buffer) {
	AKANTU_DEBUG_IN();

	std::vector< std::vector<std::string> > node_to_group;

	buffer >> node_to_group;

	AKANTU_DEBUG_ASSERT(node_to_group.size() == mesh.getNbGlobalNodes(),
	"Not the good amount of nodes where transmitted");

	const Array<UInt> & global_nodes = mesh.getGlobalNodesIds();

	Array<UInt>::const_scalar_iterator nbegin = global_nodes.begin();
	Array<UInt>::const_scalar_iterator nit = global_nodes.begin();
	Array<UInt>::const_scalar_iterator nend = global_nodes.end();

	for (; nit != nend; ++nit) {
	std::vector<std::string>::iterator it = node_to_group[*nit].begin();
	std::vector<std::string>::iterator end = node_to_group[*nit].end();

	for (; it != end; ++it) {
	mesh.getNodeGroup(*it).add(nit - nbegin, false);
	}
	}

	GroupManager::const_node_group_iterator ngi = mesh.node_group_begin();
	GroupManager::const_node_group_iterator nge = mesh.node_group_end();
	for (; ngi != nge; ++ngi) {
	NodeGroup & ng = *(ngi->second);
	ng.optimize();
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeNodeGroupsMaster(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();

	UInt nb_proc = comm.getNbProc();
	UInt my_rank = comm.whoAmI();

	UInt nb_total_nodes = mesh.getNbGlobalNodes();

	DynamicCommunicationBuffer buffer;

	typedef std::vector< std::vector<std::string> > NodeToGroup;
	NodeToGroup node_to_group;
	node_to_group.resize(nb_total_nodes);

	GroupManager::const_node_group_iterator ngi = mesh.node_group_begin();
	GroupManager::const_node_group_iterator nge = mesh.node_group_end();
	for (; ngi != nge; ++ngi) {
	NodeGroup & ng = *(ngi->second);

	std::string name = ngi->first;

	NodeGroup::const_node_iterator nit = ng.begin();
	NodeGroup::const_node_iterator nend = ng.end();
	for (; nit != nend; ++nit) {
	node_to_group[*nit].push_back(name);
	}

	nit = ng.begin();
	if(nit != nend)
	ng.empty();
	}

	buffer << node_to_group;

	std::vector<CommunicationRequest *> requests;
	for (UInt p = 0; p < nb_proc; ++p) {
	if(p == my_rank) continue;
	AKANTU_DEBUG_INFO("Sending node groups to proc " << p
	<< " TAG("<< Tag::genTag(my_rank, p, TAG_NODE_GROUP) <<")");
	requests.push_back(comm.asyncSend(buffer.storage(),
	buffer.getSize(),
	p,
	Tag::genTag(my_rank, p, TAG_NODE_GROUP)));
	}

	fillNodeGroupsFromBuffer(communicator, mesh, buffer);

	comm.waitAll(requests);
	comm.freeCommunicationRequest(requests);
	requests.clear();

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void DistributedSynchronizer::synchronizeNodeGroupsSlaves(DistributedSynchronizer & communicator,
	UInt root,
	Mesh & mesh) {
	AKANTU_DEBUG_IN();

	StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
	UInt my_rank = comm.whoAmI();


	AKANTU_DEBUG_INFO("Receiving node groups from proc " << root
	<< " TAG("<< Tag::genTag(root, my_rank, TAG_NODE_GROUP) <<")");

	CommunicationStatus status;
	comm.probe<char>(root, Tag::genTag(root, my_rank, TAG_NODE_GROUP), status);

	CommunicationBuffer buffer(status.getSize());
	comm.receive(buffer.storage(), buffer.getSize(), root, Tag::genTag(root, my_rank, TAG_NODE_GROUP));

	fillNodeGroupsFromBuffer(communicator, mesh, buffer);

	AKANTU_DEBUG_OUT();
	}

	__END_AKANTU__

distributed_synchronizer.ccNo OneTemporaryActions

File Metadata

distributed_synchronizer.ccView Options

Event Timeline

distributed_synchronizer.cc
No OneTemporary
Actions

distributed_synchronizer.cc
View Options