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conf.py
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# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file does only contain a selection of the most common options. For a
# full list see the documentation:
# http://www.sphinx-doc.org/en/master/config
# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import shutil
import jinja2
import git
import re
import subprocess
# -- General configuration ---------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'
# Number figures
numfig = True
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.intersphinx',
'sphinx.ext.coverage',
'sphinx.ext.mathjax',
'sphinx.ext.ifconfig',
'sphinx.ext.viewcode',
'sphinxcontrib.bibtex',
'breathe',
]
read_the_docs_build = os.environ.get('READTHEDOCS', None) == 'True'
if read_the_docs_build:
akantu_path = "."
akantu_source_path = "../../"
else:
akantu_path = "@CMAKE_CURRENT_BINARY_DIR@"
akantu_source_path = "@CMAKE_SOURCE_DIR@"
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'
# The master toctree document.
master_doc = 'index'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = ['CMakeLists.txt',
'manual/appendix/elements.rst',
'manual/appendix/material-parameters.rst',
'manual/constitutive-laws.rst',
'manual/new-constitutive-laws.rst']
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
primary_domain = 'cpp'
highlight_language = 'cpp'
bibtex_bibfiles = ['manual/manual-bibliography.bib']
# -- Project information -----------------------------------------------------
project = 'Akantu'
copyright = '2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)' + \
' Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)'
author = 'Nicolas Richart'
with open(os.path.join(akantu_source_path, 'VERSION'), 'r') as fh:
version_file = fh.readlines()
file_release = 'v{}'.format(version_file[0])
try:
tag_prefix = 'v'
git_repo = git.Repo(akantu_source_path)
git_describe = git_repo.git.describe('--tags', '--dirty', '--always',
'--long',
'--match', '{}*'.format(tag_prefix))
print("GIT Describe: {}".format(git_describe))
# git describe to PEP404 version
describe_matches = re.search(
(r'^{}(?P<version>.+?)' +
r'(?:-(?P<distance>\d+)-g(?P<sha>[0-9a-f]+)' +
r'(?:-(?P<dirty>dirty))?)?$').format(tag_prefix),
git_describe)
if describe_matches:
describe_matches = describe_matches.groupdict()
release = 'v' + describe_matches['version']
if describe_matches['distance']:
release += '.' if '+' in release else '+'
release += '{distance}.{sha}'.format(**describe_matches)
if describe_matches['dirty']:
release += '.dirty'
else:
count = git_repo.git.rev_list('HEAD', '--count')
describe_matches = re.search(
(r'(?P<sha>[0-9a-f]+)' +
r'(?:-(?P<dirty>dirty))?)?$').format(tag_prefix),
git_describe).groupdict()
release = 'v{}.{}+{}'.format(file_release, count,
describe_matches['sha'])
except git.InvalidGitRepositoryError:
release = 'v' + file_release
version = re.sub(r'^v([0-9]+)\.([0-9+]).*',
r'v\1.\2',
release)
print('Release: {} - Version: {}'.format(release, version))
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
if read_the_docs_build:
html_theme = 'default'
else:
html_theme = 'sphinx_rtd_theme'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_logo = '_static/logo_only_akantu.svg'
# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# The default sidebars (for documents that don't match any pattern) are
# defined by theme itself. Builtin themes are using these templates by
# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
# 'searchbox.html']``.
#
# html_sidebars = {}
html_sidebars = {
'**': [
'relations.html', # needs 'show_related': True theme option to display
'searchbox.html',
]}
math_eqref_format = "Eq. {number}"
# MathJax configuration
mathjax_config = {
'extensions': [
"tex2jax.js",
"siunitx.js"
],
'TeX': {
'Macros': {
'st': [r'\mathrm{#1}', 1],
'mat': [r'\mathbf{#1}', 1],
'half': [r'\frac{1}{2}', 0],
},
'extensions': ["AMSmath.js", "AMSsymbols.js", "sinuitx.js"],
},
}
# -- Options for HTMLHelp output ---------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename = 'Akantudoc'
# -- Options for LaTeX output ------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#
'preamble': r'''\usepackage{amsmath}''',
# Latex figure (float) alignment
#
# 'figure_align': 'htbp',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, 'Akantu.tex', 'Akantu Documentation',
'Nicolas Richart', 'manual'),
]
# -- Options for manual page output ------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
(master_doc, 'akantu', 'Akantu Documentation',
[author], 1)
]
# -- Options for Texinfo output ----------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(master_doc, 'Akantu', 'Akantu Documentation',
author, 'Akantu', 'One line description of project.',
'Miscellaneous'),
]
# -- Options for Epub output -------------------------------------------------
# Bibliographic Dublin Core info.
epub_title = project
epub_author = author
epub_publisher = author
epub_copyright = copyright
# The unique identifier of the text. This can be a ISBN number
# or the project homepage.
#
epub_identifier = ''
# A unique identification for the text.
#
# epub_uid = ''
# A list of files that should not be packed into the epub file.
epub_exclude_files = ['search.html']
# -- Extension configuration -------------------------------------------------
j2_args = {}
if read_the_docs_build:
j2_template_path = '.'
else:
j2_template_path = '@CMAKE_CURRENT_SOURCE_DIR@'
os.makedirs(os.path.join(akantu_path, '_static'), exist_ok=True)
shutil.copyfile(
os.path.join('@CMAKE_CURRENT_SOURCE_DIR@', html_logo),
os.path.join(akantu_path, html_logo))
j2_args = {
'akantu_source_path': akantu_source_path,
'akantu_version': version.replace('v', ''),
}
print(akantu_path)
j2_env = jinja2.Environment(
loader=jinja2.FileSystemLoader(j2_template_path),
undefined=jinja2.DebugUndefined)
j2_template = j2_env.get_template('akantu.dox.j2')
with open(os.path.join(akantu_path, 'akantu.dox'), 'w') as fh:
fh.write(j2_template.render(j2_args))
subprocess.run(['doxygen', 'akantu.dox'],
cwd=akantu_path)
# print("akantu_path = '{}'".format(akantu_path))
breathe_projects = {"Akantu": os.path.join(akantu_path, "xml")}
breathe_default_project = "Akantu"
breathe_default_members = ('members', 'undoc-members')
breathe_implementation_filename_extensions = ['.c', '.cc', '.cpp']
breathe_show_enumvalue_initializer = True
# -- Options for intersphinx extension ---------------------------------------
intersphinx_mapping = {
'numpy': ('https://docs.scipy.org/doc/numpy/', None),
'scipy': ('https://docs.scipy.org/doc/scipy/reference', None),
}
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