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rAKA/python/py_dumpable.cc
d7eb0b0c18befeatures/joss-2023

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py_dumpable.cc
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/* -------------------------------------------------------------------------- */
#include "py_aka_array.hh"
/* -------------------------------------------------------------------------- */
#include <dumper_iohelper_paraview.hh>
#include <mesh.hh>
/* -------------------------------------------------------------------------- */
#include <dumpable_inline_impl.hh>
/* -------------------------------------------------------------------------- */
#include <pybind11/pybind11.h>
/* -------------------------------------------------------------------------- */
namespace py = pybind11;
/* -------------------------------------------------------------------------- */
namespace akantu {
std::vector<detail::ArrayProxy<Real>> tmp_array;
void register_dumpable(py::module & mod) {
/* ------------------------------------------------------------------------ */
py::class_<Dumpable>(mod, "Dumpable")
.def("registerDumperParaview", &Dumpable::registerDumper<DumperParaview>,
py::arg("dumper_name"), py::arg("file_name"),
py::arg("is_default") = false)
.def("addDumpMeshToDumper", &Dumpable::addDumpMeshToDumper,
py::arg("dumper_name"), py::arg("mesh"), py::arg("dimension"),
py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_regular)
.def("addDumpMesh", &Dumpable::addDumpMesh, py::arg("mesh"),
py::arg("dimension"), py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_regular)
.def("addDumpField", &Dumpable::addDumpField, py::arg("field_id"))
.def("addDumpFieldToDumper", &Dumpable::addDumpFieldToDumper,
py::arg("dumper_name"), py::arg("field_id"))
.def(
"addDumpFieldExternal",
[](Dumpable & _this, const std::string & field_id,
std::shared_ptr<dumpers::Field> field) {
return _this.addDumpFieldExternal(field_id, field);
},
py::arg("field_id"), py::arg("field"))
.def(
"addDumpFieldExternal",
[](Dumpable & _this, const std::string & field_id,
Array<Real> & field) {
auto & tmp = dynamic_cast<detail::ArrayProxy<Real> &>(field);
tmp_array.push_back(tmp);
return _this.addDumpFieldExternal(field_id, tmp_array.back());
},
py::arg("field_id"), py::arg("field"))
.def(
"addDumpFieldExternalToDumper",
[](Dumpable & _this, const std::string & dumper_name,
const std::string & field_id,
std::shared_ptr<dumpers::Field> field) {
return _this.addDumpFieldExternalToDumper(dumper_name, field_id,
field);
},
py::arg("dumper_name"), py::arg("field_id"), py::arg("field"))
.def("dump", py::overload_cast<>(&Dumpable::dump))
.def("dump", py::overload_cast<Real, UInt>(&Dumpable::dump),
py::arg("time"), py::arg("step"))
.def("dump", py::overload_cast<UInt>(&Dumpable::dump), py::arg("step"))
.def("dump",
py::overload_cast<const std::string &, UInt>(&Dumpable::dump),
py::arg("dumper_name"), py::arg("step"))
.def("dump",
py::overload_cast<const std::string &, Real, UInt>(&Dumpable::dump),
py::arg("dumper_name"), py::arg("time"), py::arg("step"))
.def("dump", py::overload_cast<const std::string &>(&Dumpable::dump),
py::arg("dumper_name"));
}
/* -------------------------------------------------------------------------- */
PYBIND11_MODULE(dumper_module, mod) {
mod.attr("__name__") = "py11_akantu.dumper";
/* ------------------------------------------------------------------------ */
py::class_<dumpers::Field, std::shared_ptr<dumpers::Field>>(mod, "Field");
/* ------------------------------------------------------------------------ */
py::class_<dumpers::ElementalField<UInt>, dumpers::Field,
std::shared_ptr<dumpers::ElementalField<UInt>>>(
mod, "ElementalFieldUInt", py::multiple_inheritance())
.def(py::init<dumpers::ElementalField<UInt>::field_type &, UInt,
GhostType, ElementKind>(),
py::arg("field"), py::arg("spatial_dimension") = _all_dimensions,
py::arg("ghost_type") = _not_ghost,
py::arg("element_kind") = _ek_not_defined);
}
} // namespace akantu
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