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dof_synchronizer_inline_impl.cc
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/**
* @file dof_synchronizer_inline_impl.cc
*
* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Fri Jun 17 2011
* @date last modification: Wed Nov 08 2017
*
* @brief DOFSynchronizer inline implementation
*
* @section LICENSE
*
* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "communication_buffer.hh"
#include "data_accessor.hh"
#include "dof_manager_default.hh"
#include "dof_synchronizer.hh"
/* -------------------------------------------------------------------------- */
#include <map>
/* -------------------------------------------------------------------------- */
#ifndef __AKANTU_DOF_SYNCHRONIZER_INLINE_IMPL_CC__
#define __AKANTU_DOF_SYNCHRONIZER_INLINE_IMPL_CC__
namespace akantu {
/* -------------------------------------------------------------------------- */
template <typename T>
void DOFSynchronizer::gather(const Array<T> & to_gather, Array<T> & gathered) {
if (this->hasChanged())
initScatterGatherCommunicationScheme();
AKANTU_DEBUG_ASSERT(this->rank == UInt(this->root),
"This function cannot be called on a slave processor");
AKANTU_DEBUG_ASSERT(to_gather.size() ==
this->dof_manager.getLocalSystemSize(),
"The array to gather does not have the correct size");
AKANTU_DEBUG_ASSERT(gathered.size() == this->dof_manager.getSystemSize(),
"The gathered array does not have the correct size");
if (this->nb_proc == 1) {
gathered.copy(to_gather, true);
AKANTU_DEBUG_OUT();
return;
}
std::map<UInt, CommunicationBuffer> buffers;
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < this->nb_proc; ++p) {
if (p == UInt(this->root))
continue;
auto receive_it = this->master_receive_dofs.find(p);
AKANTU_DEBUG_ASSERT(receive_it != this->master_receive_dofs.end(),
"Could not find the receive list for dofs of proc "
<< p);
const Array<UInt> & receive_dofs = receive_it->second;
if (receive_dofs.size() == 0)
continue;
CommunicationBuffer & buffer = buffers[p];
buffer.resize(receive_dofs.size() * to_gather.getNbComponent() * sizeof(T));
AKANTU_DEBUG_INFO(
"Preparing to receive data for "
<< receive_dofs.size() << " dofs from processor " << p << " "
<< Tag::genTag(p, this->root, Tag::_GATHER, this->hash_id));
requests.push_back(communicator.asyncReceive(
buffer, p, Tag::genTag(p, this->root, Tag::_GATHER, this->hash_id)));
}
auto data_gathered_it = gathered.begin(to_gather.getNbComponent());
{ // copy master data
auto data_to_gather_it = to_gather.begin(to_gather.getNbComponent());
for (auto local_dof : root_dofs) {
UInt global_dof = dof_manager.localToGlobalEquationNumber(local_dof);
Vector<T> dof_data_gathered = data_gathered_it[global_dof];
Vector<T> dof_data_to_gather = data_to_gather_it[local_dof];
dof_data_gathered = dof_data_to_gather;
}
}
auto rr = UInt(-1);
while ((rr = communicator.waitAny(requests)) != UInt(-1)) {
CommunicationRequest & request = requests[rr];
UInt sender = request.getSource();
AKANTU_DEBUG_ASSERT(this->master_receive_dofs.find(sender) !=
this->master_receive_dofs.end() &&
buffers.find(sender) != buffers.end(),
"Missing infos concerning proc " << sender);
const Array<UInt> & receive_dofs =
this->master_receive_dofs.find(sender)->second;
CommunicationBuffer & buffer = buffers[sender];
for (auto global_dof : receive_dofs) {
Vector<T> dof_data = data_gathered_it[global_dof];
buffer >> dof_data;
}
requests.erase(requests.begin() + rr);
}
}
/* -------------------------------------------------------------------------- */
template <typename T> void DOFSynchronizer::gather(const Array<T> & to_gather) {
AKANTU_DEBUG_IN();
if (this->hasChanged())
initScatterGatherCommunicationScheme();
AKANTU_DEBUG_ASSERT(this->rank != UInt(this->root),
"This function cannot be called on the root processor");
AKANTU_DEBUG_ASSERT(to_gather.size() ==
this->dof_manager.getLocalSystemSize(),
"The array to gather does not have the correct size");
if (this->root_dofs.size() == 0) {
AKANTU_DEBUG_OUT();
return;
}
CommunicationBuffer buffer(this->root_dofs.size() *
to_gather.getNbComponent() * sizeof(T));
auto data_it = to_gather.begin(to_gather.getNbComponent());
for (auto dof : this->root_dofs) {
Vector<T> data = data_it[dof];
buffer << data;
}
AKANTU_DEBUG_INFO("Gathering data for "
<< to_gather.size() << " dofs on processor " << this->root
<< " "
<< Tag::genTag(this->rank, 0, Tag::_GATHER, this->hash_id));
communicator.send(buffer, this->root,
Tag::genTag(this->rank, 0, Tag::_GATHER, this->hash_id));
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
template <typename T>
void DOFSynchronizer::scatter(Array<T> & scattered,
const Array<T> & to_scatter) {
AKANTU_DEBUG_IN();
if (this->hasChanged())
initScatterGatherCommunicationScheme();
AKANTU_DEBUG_ASSERT(this->rank == UInt(this->root),
"This function cannot be called on a slave processor");
AKANTU_DEBUG_ASSERT(scattered.size() ==
this->dof_manager.getLocalSystemSize(),
"The scattered array does not have the correct size");
AKANTU_DEBUG_ASSERT(to_scatter.size() == this->dof_manager.getSystemSize(),
"The array to scatter does not have the correct size");
if (this->nb_proc == 1) {
scattered.copy(to_scatter, true);
AKANTU_DEBUG_OUT();
return;
}
std::map<UInt, CommunicationBuffer> buffers;
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < nb_proc; ++p) {
auto data_to_scatter_it = to_scatter.begin(to_scatter.getNbComponent());
if (p == this->rank) {
auto data_scattered_it = scattered.begin(to_scatter.getNbComponent());
// copy the data for the local processor
for (auto local_dof : root_dofs) {
auto global_dof = dof_manager.localToGlobalEquationNumber(local_dof);
Vector<T> dof_data_to_scatter = data_to_scatter_it[global_dof];
Vector<T> dof_data_scattered = data_scattered_it[local_dof];
dof_data_scattered = dof_data_to_scatter;
}
continue;
}
const Array<UInt> & receive_dofs =
this->master_receive_dofs.find(p)->second;
// prepare the send buffer
CommunicationBuffer & buffer = buffers[p];
buffer.resize(receive_dofs.size() * scattered.getNbComponent() * sizeof(T));
// pack the data
for (auto global_dof : receive_dofs) {
Vector<T> dof_data_to_scatter = data_to_scatter_it[global_dof];
buffer << dof_data_to_scatter;
}
// send the data
requests.push_back(communicator.asyncSend(
buffer, p, Tag::genTag(p, 0, Tag::_SCATTER, this->hash_id)));
}
// wait a clean communications
communicator.waitAll(requests);
communicator.freeCommunicationRequest(requests);
// synchronize slave and ghost nodes
synchronize(scattered);
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
template <typename T> void DOFSynchronizer::scatter(Array<T> & scattered) {
AKANTU_DEBUG_IN();
if (this->hasChanged())
this->initScatterGatherCommunicationScheme();
AKANTU_DEBUG_ASSERT(this->rank != UInt(this->root),
"This function cannot be called on the root processor");
AKANTU_DEBUG_ASSERT(scattered.size() ==
this->dof_manager.getLocalSystemSize(),
"The scattered array does not have the correct size");
// prepare the data
auto data_scattered_it = scattered.begin(scattered.getNbComponent());
CommunicationBuffer buffer(this->root_dofs.size() *
scattered.getNbComponent() * sizeof(T));
// receive the data
communicator.receive(
buffer, this->root,
Tag::genTag(this->rank, 0, Tag::_SCATTER, this->hash_id));
// unpack the data
for (auto local_dof : root_dofs) {
Vector<T> dof_data_scattered = data_scattered_it[local_dof];
buffer >> dof_data_scattered;
}
// synchronize the ghosts
synchronize(scattered);
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
template <template <class> class Op, typename T>
void DOFSynchronizer::reduceSynchronize(Array<T> & array) const {
ReduceDataAccessor<UInt, Op, T> data_accessor(array,
SynchronizationTag::_whatever);
this->slaveReductionOnceImpl(data_accessor, SynchronizationTag::_whatever);
this->synchronize(array);
}
/* -------------------------------------------------------------------------- */
template <typename T>
void DOFSynchronizer::synchronize(Array<T> & array) const {
SimpleUIntDataAccessor<T> data_accessor(array, SynchronizationTag::_whatever);
this->synchronizeOnce(data_accessor, SynchronizationTag::_whatever);
}
} // namespace akantu
#endif /* __AKANTU_DOF_SYNCHRONIZER_INLINE_IMPL_CC__ */
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