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fe_engine_template_tmpl_field.hh
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			/**
			* @file fe_engine_template_tmpl_field.hh
			*
			* @author Nicolas Richart <nicolas.richart@epfl.ch>
			*
			* @date creation: Wed Aug 09 2017
			* @date last modification: Thu Dec 07 2017
			*
			* @brief implementation of the assemble field s functions
			*
			* @section LICENSE
			*
			* Copyright (©) 2016-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */
			#include "fe_engine_template.hh"
			/* -------------------------------------------------------------------------- */

			#ifndef __AKANTU_FE_ENGINE_TEMPLATE_TMPL_FIELD_HH__
			#define __AKANTU_FE_ENGINE_TEMPLATE_TMPL_FIELD_HH__

			namespace akantu {

			/* -------------------------------------------------------------------------- */
			/* Matrix lumping functions */
			/* -------------------------------------------------------------------------- */
			namespace fe_engine {
			namespace details {
			namespace {
			template <class Functor>
			void fillField(const Functor & field_funct, Array<Real> & field,
			UInt nb_element, UInt nb_integration_points,
			const ElementType & type, const GhostType & ghost_type) {
			UInt nb_degree_of_freedom = field.getNbComponent();
			field.resize(nb_integration_points * nb_element);

			auto field_it = field.begin_reinterpret(
			nb_degree_of_freedom, nb_integration_points, nb_element);

			Element el{type, 0, ghost_type};
			for (; el.element < nb_element; ++el.element, ++field_it) {
			field_funct(*field_it, el);
			}
			}
			} // namespace
			} // namespace details
			} // namespace fe_engine

			/**
			* Helper class to be able to write a partial specialization on the element kind
			*/
			namespace fe_engine {
			namespace details {
			template <ElementKind kind> struct AssembleLumpedTemplateHelper {};

			#define ASSEMBLE_LUMPED(type) \
			fem.template assembleFieldLumped<Functor, type>(field_funct, lumped, dof_id, \
			dof_manager, ghost_type)

			#define AKANTU_SPECIALIZE_ASSEMBLE_HELPER(kind) \
			template <> struct AssembleLumpedTemplateHelper<kind> { \
			template <template <ElementKind, class> class I, \
			template <ElementKind> class S, ElementKind k, class IOF, \
			class Functor> \
			static void call(const FEEngineTemplate<I, S, k, IOF> & fem, \
			const Functor & field_funct, const ID & lumped, \
			const ID & dof_id, DOFManager & dof_manager, \
			ElementType type, const GhostType & ghost_type) { \
			AKANTU_BOOST_KIND_ELEMENT_SWITCH(ASSEMBLE_LUMPED, kind); \
			} \
			};

			AKANTU_BOOST_ALL_KIND(AKANTU_SPECIALIZE_ASSEMBLE_HELPER)

			#undef AKANTU_SPECIALIZE_ASSEMBLE_HELPER
			#undef ASSEMBLE_LUMPED
			} // namespace details
			} // namespace fe_engine

			/* -------------------------------------------------------------------------- */
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IOF>
			template <class Functor>
			void FEEngineTemplate<I, S, kind, IOF>::assembleFieldLumped(
			const Functor & field_funct, const ID & matrix_id, const ID & dof_id,
			DOFManager & dof_manager, ElementType type,
			const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			fe_engine::details::AssembleLumpedTemplateHelper<kind>::call(
			*this, field_funct, matrix_id, dof_id, dof_manager, type, ghost_type);

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */

			/* -------------------------------------------------------------------------- */
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IntegrationOrderFunctor>
			template <class Functor, ElementType type>
			void FEEngineTemplate<I, S, kind, IntegrationOrderFunctor>::assembleFieldLumped(
			const Functor & field_funct, const ID & matrix_id, const ID & dof_id,
			DOFManager & dof_manager, const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			UInt nb_degree_of_freedom = dof_manager.getDOFs(dof_id).getNbComponent();
			UInt nb_element = mesh.getNbElement(type, ghost_type);
			UInt nb_integration_points = this->getNbIntegrationPoints(type);

			Array<Real> field(0, nb_degree_of_freedom);
			fe_engine::details::fillField(field_funct, field, nb_element,
			nb_integration_points, type, ghost_type);

			switch (type) {
			case _triangle_6:
			case _quadrangle_8:
			case _tetrahedron_10:
			case _hexahedron_20:
			case _pentahedron_15:
			this->template assembleLumpedDiagonalScaling<type>(field, matrix_id, dof_id,
			dof_manager, ghost_type);
			break;
			default:
			this->template assembleLumpedRowSum<type>(field, matrix_id, dof_id,
			dof_manager, ghost_type);
			}

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			/**
			* @f$ \tilde{M}_{i} = \sum_j M_{ij} = \sum_j \int \rho \varphi_i \varphi_j dV =
			* \int \rho \varphi_i dV @f$
			*/
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IntegrationOrderFunctor>
			template <ElementType type>
			void FEEngineTemplate<I, S, kind, IntegrationOrderFunctor>::
			assembleLumpedRowSum(const Array<Real> & field, const ID & matrix_id,
			const ID & dof_id, DOFManager & dof_manager,
			const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			UInt shapes_size = ElementClass<type>::getShapeSize();
			UInt nb_degree_of_freedom = field.getNbComponent();

			Array<Real> * field_times_shapes =
			new Array<Real>(0, shapes_size * nb_degree_of_freedom);

			shape_functions.template computeNtb<type>(field, *field_times_shapes,
			ghost_type);

			UInt nb_element = mesh.getNbElement(type, ghost_type);
			Array<Real> * int_field_times_shapes = new Array<Real>(
			nb_element, shapes_size * nb_degree_of_freedom, "inte_rho_x_shapes");

			integrator.template integrate<type>(
			field_times_shapes, int_field_times_shapes,
			nb_degree_of_freedom * shapes_size, ghost_type, empty_filter);

			delete field_times_shapes;

			dof_manager.assembleElementalArrayToLumpedMatrix(
			dof_id, *int_field_times_shapes, matrix_id, type, ghost_type);

			delete int_field_times_shapes;

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			/**
			* @f$ \tilde{M}_{i} = c * M_{ii} = \int_{V_e} \rho dV @f$
			*/
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IntegrationOrderFunctor>
			template <ElementType type>
			void FEEngineTemplate<I, S, kind, IntegrationOrderFunctor>::
			assembleLumpedDiagonalScaling(const Array<Real> & field,
			const ID & matrix_id, const ID & dof_id,
			DOFManager & dof_manager,
			const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			const ElementType & type_p1 = ElementClass<type>::getP1ElementType();
			UInt nb_nodes_per_element_p1 = Mesh::getNbNodesPerElement(type_p1);
			UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
			UInt nb_degree_of_freedom = field.getNbComponent();
			UInt nb_element = mesh.getNbElement(type, ghost_type);

			Vector<Real> nodal_factor(nb_nodes_per_element);

			#define ASSIGN_WEIGHT_TO_NODES(corner, mid) \
			{ \
			for (UInt n = 0; n < nb_nodes_per_element_p1; n++) \
			nodal_factor(n) = corner; \
			for (UInt n = nb_nodes_per_element_p1; n < nb_nodes_per_element; n++) \
			nodal_factor(n) = mid; \
			}

			if (type == _triangle_6)
			ASSIGN_WEIGHT_TO_NODES(1. / 12., 1. / 4.);
			if (type == _tetrahedron_10)
			ASSIGN_WEIGHT_TO_NODES(1. / 32., 7. / 48.);
			if (type == _quadrangle_8)
			ASSIGN_WEIGHT_TO_NODES(
			3. / 76.,
			16. / 76.); /** coeff. derived by scaling
			* the diagonal terms of the corresponding
			* consistent mass computed with 3x3 gauss points;
			* coeff. are (1./36., 8./36.) for 2x2 gauss points */
			if (type == _hexahedron_20)
			ASSIGN_WEIGHT_TO_NODES(
			7. / 248.,
			16. / 248.); /** coeff. derived by scaling
			* the diagonal terms of the corresponding
			* consistent mass computed with 3x3x3 gauss points;
			* coeff. are (1./40.,
			* 1./15.) for 2x2x2 gauss points */
			if (type == _pentahedron_15) {
			// coefficients derived by scaling the diagonal terms of the corresponding
			// consistent mass computed with 8 gauss points;
			for (UInt n = 0; n < nb_nodes_per_element_p1; n++)
			nodal_factor(n) = 51. / 2358.;

			Real mid_triangle = 192. / 2358.;
			Real mid_quadrangle = 300. / 2358.;

			nodal_factor(6) = mid_triangle;
			nodal_factor(7) = mid_triangle;
			nodal_factor(8) = mid_triangle;
			nodal_factor(9) = mid_quadrangle;
			nodal_factor(10) = mid_quadrangle;
			nodal_factor(11) = mid_quadrangle;
			nodal_factor(12) = mid_triangle;
			nodal_factor(13) = mid_triangle;
			nodal_factor(14) = mid_triangle;
			}

			if (nb_element == 0) {
			AKANTU_DEBUG_OUT();
			return;
			}

			#undef ASSIGN_WEIGHT_TO_NODES
			/// compute @f$ \int \rho dV = \rho V @f$ for each element
			auto int_field = std::make_unique<Array<Real>>(
			field.size(), nb_degree_of_freedom, "inte_rho_x");
			integrator.template integrate<type>(field, *int_field, nb_degree_of_freedom,
			ghost_type, empty_filter);

			/// distribute the mass of the element to the nodes
			auto lumped_per_node = std::make_unique<Array<Real>>(
			nb_element, nb_degree_of_freedom * nb_nodes_per_element, "mass_per_node");
			auto int_field_it = int_field->begin(nb_degree_of_freedom);
			auto lumped_per_node_it =
			lumped_per_node->begin(nb_degree_of_freedom, nb_nodes_per_element);

			for (UInt e = 0; e < nb_element; ++e) {
			for (UInt n = 0; n < nb_nodes_per_element; ++n) {
			Vector<Real> l = (*lumped_per_node_it)(n);
			l = *int_field_it;
			l *= nodal_factor(n);
			}
			++int_field_it;
			++lumped_per_node_it;
			}

			dof_manager.assembleElementalArrayToLumpedMatrix(dof_id, *lumped_per_node,
			matrix_id, type, ghost_type);

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			/**
			* Helper class to be able to write a partial specialization on the element kind
			*/
			namespace fe_engine {
			namespace details {
			template <ElementKind kind> struct AssembleFieldMatrixHelper {};

			#define ASSEMBLE_MATRIX(type) \
			fem.template assembleFieldMatrix<Functor, type>( \
			field_funct, matrix_id, dof_id, dof_manager, ghost_type)

			#define AKANTU_SPECIALIZE_ASSEMBLE_FIELD_MATRIX_HELPER(kind) \
			template <> struct AssembleFieldMatrixHelper<kind> { \
			template <template <ElementKind, class> class I, \
			template <ElementKind> class S, ElementKind k, class IOF, \
			class Functor> \
			static void call(const FEEngineTemplate<I, S, k, IOF> & fem, \
			const Functor & field_funct, const ID & matrix_id, \
			const ID & dof_id, DOFManager & dof_manager, \
			ElementType type, const GhostType & ghost_type) { \
			AKANTU_BOOST_KIND_ELEMENT_SWITCH(ASSEMBLE_MATRIX, kind); \
			} \
			};

			AKANTU_BOOST_ALL_KIND(AKANTU_SPECIALIZE_ASSEMBLE_FIELD_MATRIX_HELPER)

			#undef AKANTU_SPECIALIZE_ASSEMBLE_FIELD_MATRIX_HELPER
			#undef ASSEMBLE_MATRIX
			} // namespace details
			} // namespace fe_engine

			/* -------------------------------------------------------------------------- */
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IOF>
			template <class Functor>
			void FEEngineTemplate<I, S, kind, IOF>::assembleFieldMatrix(
			const Functor & field_funct, const ID & matrix_id, const ID & dof_id,
			DOFManager & dof_manager, ElementType type,
			const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();
			fe_engine::details::AssembleFieldMatrixHelper<kind>::template call(
			*this, field_funct, matrix_id, dof_id, dof_manager, type, ghost_type);

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			/**
			* @f$ \tilde{M}_{i} = \sum_j M_{ij} = \sum_j \int \rho \varphi_i \varphi_j dV =
			* \int \rho \varphi_i dV @f$
			*/
			template <template <ElementKind, class> class I, template <ElementKind> class S,
			ElementKind kind, class IntegrationOrderFunctor>
			template <class Functor, ElementType type>
			void FEEngineTemplate<I, S, kind, IntegrationOrderFunctor>::assembleFieldMatrix(
			const Functor & field_funct, const ID & matrix_id, const ID & dof_id,
			DOFManager & dof_manager, const GhostType & ghost_type) const {
			AKANTU_DEBUG_IN();

			UInt shapes_size = ElementClass<type>::getShapeSize();
			UInt nb_degree_of_freedom = dof_manager.getDOFs(dof_id).getNbComponent();
			UInt lmat_size = nb_degree_of_freedom * shapes_size;
			UInt nb_element = mesh.getNbElement(type, ghost_type);

			// \int N * N so degree 2 * degree of N
			const UInt polynomial_degree =
			2 * ElementClassProperty<type>::polynomial_degree;

			// getting the integration points
			Matrix<Real> integration_points =
			integrator.template getIntegrationPoints<type, polynomial_degree>();

			UInt nb_integration_points = integration_points.cols();
			UInt vect_size = nb_integration_points * nb_element;

			// getting the shapes on the integration points
			Array<Real> shapes(0, shapes_size);
			shape_functions.template computeShapesOnIntegrationPoints<type>(
			mesh.getNodes(), integration_points, shapes, ghost_type);

			// Extending the shape functions
			/// \TODO move this in the shape functions as Voigt format shapes to have the
			/// code in common with the structural elements
			Array<Real> modified_shapes(vect_size, lmat_size * nb_degree_of_freedom, 0.);
			Array<Real> local_mat(vect_size, lmat_size * lmat_size);
			auto mshapes_it = modified_shapes.begin(nb_degree_of_freedom, lmat_size);
			auto shapes_it = shapes.begin(shapes_size);

			for (UInt q = 0; q < vect_size; ++q, ++mshapes_it, ++shapes_it) {
			for (UInt d = 0; d < nb_degree_of_freedom; ++d) {
			for (UInt s = 0; s < shapes_size; ++s) {
			(mshapes_it)(d, s nb_degree_of_freedom + d) = (*shapes_it)(s);
			}
			}
			}

			// getting the value to assemble on the integration points
			Array<Real> field(vect_size, nb_degree_of_freedom);
			fe_engine::details::fillField(field_funct, field, nb_element,
			nb_integration_points, type, ghost_type);

			// computing \rho * N
			mshapes_it = modified_shapes.begin(nb_degree_of_freedom, lmat_size);
			auto lmat = local_mat.begin(lmat_size, lmat_size);
			auto field_it = field.begin_reinterpret(nb_degree_of_freedom, field.size());

			for (UInt q = 0; q < vect_size; ++q, ++lmat, ++mshapes_it, ++field_it) {
			const auto & rho = *field_it;
			const auto & N = *mshapes_it;
			auto & mat = *lmat;

			Matrix<Real> Nt = N.transpose();
			for (UInt d = 0; d < Nt.cols(); ++d) {
			Nt(d) *= rho(d);
			}

			mat.template mul<false, false>(Nt, N);
			}

			// integrate the elemental values
			Array<Real> int_field_times_shapes(nb_element, lmat_size * lmat_size,
			"inte_rho_x_shapes");
			this->integrator.template integrate<type, polynomial_degree>(
			local_mat, int_field_times_shapes, lmat_size * lmat_size, ghost_type);

			// assemble the elemental values to the matrix
			dof_manager.assembleElementalMatricesToMatrix(
			matrix_id, dof_id, int_field_times_shapes, type, ghost_type);

			AKANTU_DEBUG_OUT();
			}

			} // namespace akantu

			#endif /* __AKANTU_FE_ENGINE_TEMPLATE_TMPL_FIELD_HH__ */

rAKA/src/fe_engine/fe_engine_template_tmpl_field.hhf4dd6b579644features/material_inter…

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rAKA/src/fe_engine/fe_engine_template_tmpl_field.hh
f4dd6b579644features/material_inter…

fe_engine_template_tmpl_field.hh
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