Diffusion akantu (features/python-doc) Browse

python-doc

node_info_per_processor.cc
View Options

			/**
			* @file node_info_per_processor.cc
			*
			* @author Nicolas Richart <nicolas.richart@epfl.ch>
			*
			* @date creation: Wed Mar 16 2016
			* @date last modification: Fri Jul 24 2020
			*
			* @brief Please type the brief for file: Helper classes to create the
			* distributed synchronizer and distribute a mesh
			*
			*
			* @section LICENSE
			*
			* Copyright (©) 2016-2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */
			#include "node_info_per_processor.hh"
			#include "communicator.hh"
			#include "node_group.hh"
			#include "node_synchronizer.hh"
			/* -------------------------------------------------------------------------- */
			#include <algorithm>
			/* -------------------------------------------------------------------------- */

			namespace akantu {

			/* -------------------------------------------------------------------------- */
			NodeInfoPerProc::NodeInfoPerProc(NodeSynchronizer & synchronizer,
			UInt message_cnt, UInt root)
			: MeshAccessor(synchronizer.getMesh()), synchronizer(synchronizer),
			comm(synchronizer.getCommunicator()), rank(comm.whoAmI()),
			nb_proc(comm.getNbProc()), root(root), mesh(synchronizer.getMesh()),
			spatial_dimension(synchronizer.getMesh().getSpatialDimension()),
			message_count(message_cnt) {}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::synchronize() {
			synchronizeNodes();
			synchronizeTypes();
			synchronizeGroups();
			synchronizePeriodicity();
			synchronizeTags();
			}

			/* -------------------------------------------------------------------------- */
			template <class CommunicationBuffer>
			void NodeInfoPerProc::fillNodeGroupsFromBuffer(CommunicationBuffer & buffer) {
			AKANTU_DEBUG_IN();

			std::vector<std::vector<std::string>> node_to_group;

			buffer >> node_to_group;

			AKANTU_DEBUG_ASSERT(node_to_group.size() == mesh.getNbGlobalNodes(),
			"Not the good amount of nodes where transmitted");

			const auto & global_nodes = mesh.getGlobalNodesIds();

			for (auto && data : enumerate(global_nodes)) {
			for (const auto & node : node_to_group[std::get<1>(data)]) {
			mesh.getNodeGroup(node).add(std::get<0>(data), false);
			}
			}

			for (auto && ng_data : mesh.iterateNodeGroups()) {
			ng_data.optimize();
			}

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::fillNodesType() {
			AKANTU_DEBUG_IN();

			UInt nb_nodes = mesh.getNbNodes();
			auto & nodes_flags = this->getNodesFlags();

			Array<UInt> nodes_set(nb_nodes);
			nodes_set.set(0);

			enum NodeSet {
			NORMAL_SET = 1,
			GHOST_SET = 2,
			};

			Array<bool> already_seen(nb_nodes, 1, false);

			for (auto gt : ghost_types) {
			UInt set = NORMAL_SET;
			if (gt == _ghost) {
			set = GHOST_SET;
			}

			already_seen.set(false);
			for (auto && type :
			mesh.elementTypes(_all_dimensions, gt, _ek_not_defined)) {
			const auto & connectivity = mesh.getConnectivity(type, gt);

			for (const auto & conn :
			make_view(connectivity, connectivity.getNbComponent())) {
			for (UInt n = 0; n < conn.size(); ++n) {
			AKANTU_DEBUG_ASSERT(conn(n) < nb_nodes,
			"Node " << conn(n)
			<< " bigger than number of nodes "
			<< nb_nodes);
			if (!already_seen(conn(n))) {
			nodes_set(conn(n)) += set;
			already_seen(conn(n)) = true;
			}
			}
			}
			}
			}

			nodes_flags.resize(nb_nodes);
			for (UInt i = 0; i < nb_nodes; ++i) {
			if (nodes_set(i) == NORMAL_SET) {
			nodes_flags(i) = NodeFlag::_normal;
			} else if (nodes_set(i) == GHOST_SET) {
			nodes_flags(i) = NodeFlag::_pure_ghost;
			} else if (nodes_set(i) == (GHOST_SET + NORMAL_SET)) {
			nodes_flags(i) = NodeFlag::_master;
			} else {
			AKANTU_EXCEPTION("Gni ?");
			}
			}

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::fillCommunicationScheme(const Array<UInt> & master_info) {
			AKANTU_DEBUG_IN();

			Communications<UInt> & communications =
			this->synchronizer.getCommunications();

			{ // send schemes
			std::map<UInt, Array<UInt>> send_array_per_proc;

			for (const auto & send_info : make_view(master_info, 2)) {
			send_array_per_proc[send_info(0)].push_back(send_info(1));
			}

			for (auto & send_schemes : send_array_per_proc) {
			auto & scheme = communications.createSendScheme(send_schemes.first);

			auto & sends = send_schemes.second;
			std::sort(sends.begin(), sends.end());
			std::transform(sends.begin(), sends.end(), sends.begin(),
			[this](UInt g) -> UInt { return mesh.getNodeLocalId(g); });
			scheme.copy(sends);
			AKANTU_DEBUG_INFO("Proc " << rank << " has " << sends.size()
			<< " nodes to send to to proc "
			<< send_schemes.first);
			}
			}

			{ // receive schemes
			std::map<UInt, Array<UInt>> recv_array_per_proc;

			for (auto node : arange(mesh.getNbNodes())) {
			if (mesh.isSlaveNode(node)) {
			recv_array_per_proc[mesh.getNodePrank(node)].push_back(
			mesh.getNodeGlobalId(node));
			}
			}

			for (auto & recv_schemes : recv_array_per_proc) {
			auto & scheme = communications.createRecvScheme(recv_schemes.first);

			auto & recvs = recv_schemes.second;
			std::sort(recvs.begin(), recvs.end());
			std::transform(recvs.begin(), recvs.end(), recvs.begin(),
			[this](UInt g) -> UInt { return mesh.getNodeLocalId(g); });

			scheme.copy(recvs);
			AKANTU_DEBUG_INFO("Proc " << rank << " will receive " << recvs.size()
			<< " nodes from proc " << recv_schemes.first);
			}
			}

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::fillPeriodicPairs(const Array<UInt> & global_pairs,
			std::vector<UInt> & missing_nodes) {
			this->wipePeriodicInfo();
			auto & nodes_flags = this->getNodesFlags();

			auto checkIsLocal = [&](auto && global_node) {
			auto && node = mesh.getNodeLocalId(global_node);
			if (node == UInt(-1)) {
			auto & global_nodes = this->getNodesGlobalIds();
			node = global_nodes.size();

			global_nodes.push_back(global_node);
			nodes_flags.push_back(NodeFlag::_pure_ghost);
			missing_nodes.push_back(global_node);
			std::cout << "Missing node " << node << std::endl;
			}
			return node;
			};

			for (auto && pairs : make_view(global_pairs, 2)) {
			UInt slave = checkIsLocal(pairs(0));
			UInt master = checkIsLocal(pairs(1));

			this->addPeriodicSlave(slave, master);
			}

			this->markMeshPeriodic();
			}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::receiveMissingPeriodic(
			DynamicCommunicationBuffer & buffer) {
			auto & nodes = this->getNodes();
			Communications<UInt> & communications =
			this->synchronizer.getCommunications();

			std::size_t nb_nodes;
			buffer >> nb_nodes;

			for (auto _ [[gnu::unused]] : arange(nb_nodes)) {
			Vector<Real> pos(spatial_dimension);
			Int prank;
			buffer >> pos;
			buffer >> prank;

			UInt node = nodes.size();

			this->setNodePrank(node, prank);
			nodes.push_back(pos);

			auto & scheme = communications.createRecvScheme(prank);
			scheme.push_back(node);
			}

			while (buffer.getLeftToUnpack() != 0) {
			Int prank;
			UInt gnode;

			buffer >> gnode;
			buffer >> prank;
			auto node = mesh.getNodeLocalId(gnode);

			AKANTU_DEBUG_ASSERT(node != UInt(-1),
			"I cannot send the node "
			<< gnode << " to proc " << prank
			<< " because it is note a local node");

			auto & scheme = communications.createSendScheme(prank);
			scheme.push_back(node);
			}
			}

			/* -------------------------------------------------------------------------- */
			void NodeInfoPerProc::fillNodalData(DynamicCommunicationBuffer & buffer,
			const std::string & tag_name) {

			#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, _, elem) \
			case MeshDataTypeCode::BOOST_PP_TUPLE_ELEM(2, 0, elem): { \
			auto & nodal_data = \
			mesh.getNodalData<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(tag_name); \
			nodal_data.resize(mesh.getNbNodes()); \
			for (auto && data : make_view(nodal_data)) { \
			buffer >> data; \
			} \
			break; \
			}

			MeshDataTypeCode data_type_code =
			mesh.getTypeCode(tag_name, MeshDataType::_nodal);
			switch (data_type_code) {
			BOOST_PP_SEQ_FOR_EACH(AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA, ,
			AKANTU_MESH_DATA_TYPES)
			default:
			AKANTU_ERROR("Could not obtain the type of tag" << tag_name << "!");
			break;
			}
			#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
			}

			/* -------------------------------------------------------------------------- */
			/* -------------------------------------------------------------------------- */

			/* -------------------------------------------------------------------------- */
			MasterNodeInfoPerProc::MasterNodeInfoPerProc(NodeSynchronizer & synchronizer,
			UInt message_cnt, UInt root)
			: NodeInfoPerProc(synchronizer, message_cnt, root),
			all_nodes(0, synchronizer.getMesh().getSpatialDimension()) {
			UInt nb_global_nodes = this->mesh.getNbGlobalNodes();
			this->comm.broadcast(nb_global_nodes, this->root);
			}

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::synchronizeNodes() {
			this->nodes_per_proc.resize(nb_proc);
			this->nb_nodes_per_proc.resize(nb_proc);

			Array<Real> local_nodes(0, spatial_dimension);
			Array<Real> & nodes = this->getNodes();

			all_nodes.copy(nodes);
			nodes_pranks.resize(nodes.size(), UInt(-1));

			for (UInt p = 0; p < nb_proc; ++p) {
			UInt nb_nodes = 0;
			// UInt * buffer;
			Array<Real> * nodes_to_send{nullptr};

			Array<UInt> & nodespp = nodes_per_proc[p];
			if (p != root) {
			nodes_to_send = new Array<Real>(0, spatial_dimension);
			AKANTU_DEBUG_INFO("Receiving number of nodes from proc "
			<< p << " " << Tag::genTag(p, 0, Tag::_nb_nodes));
			comm.receive(nb_nodes, p, Tag::genTag(p, 0, Tag::_nb_nodes));
			nodespp.resize(nb_nodes);
			this->nb_nodes_per_proc(p) = nb_nodes;

			AKANTU_DEBUG_INFO("Receiving list of nodes from proc "
			<< p << " " << Tag::genTag(p, 0, Tag::_nodes));
			comm.receive(nodespp, p, Tag::genTag(p, 0, Tag::_nodes));
			} else {
			Array<UInt> & local_ids = this->getNodesGlobalIds();
			this->nb_nodes_per_proc(p) = local_ids.size();
			nodespp.copy(local_ids);
			nodes_to_send = &local_nodes;
			}

			/// get the coordinates for the selected nodes
			for (const auto & node : nodespp) {
			Vector<Real> coord(nodes.storage() + spatial_dimension * node,
			spatial_dimension);
			nodes_to_send->push_back(coord);
			}

			if (p != root) { /// send them for distant processors
			AKANTU_DEBUG_INFO("Sending coordinates to proc "
			<< p << " "
			<< Tag::genTag(this->rank, 0, Tag::_coordinates));
			comm.send(*nodes_to_send, p,
			Tag::genTag(this->rank, 0, Tag::_coordinates));

			delete nodes_to_send;
			}
			}

			/// construct the local nodes coordinates
			nodes.copy(local_nodes);
			}

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::synchronizeTypes() {
			// <global_id, <proc, local_id> >
			std::multimap<UInt, std::pair<UInt, UInt>> nodes_to_proc;
			std::vector<Array<NodeFlag>> nodes_flags_per_proc(nb_proc);
			std::vector<Array<Int>> nodes_prank_per_proc(nb_proc);

			if (mesh.isPeriodic()) {
			all_periodic_flags.copy(this->getNodesFlags());
			}

			// arrays containing pairs of (proc, node)
			std::vector<Array<UInt>> nodes_to_send_per_proc(nb_proc);
			for (UInt p = 0; p < nb_proc; ++p) {
			nodes_flags_per_proc[p].resize(nb_nodes_per_proc(p), NodeFlag(0xFF));
			nodes_prank_per_proc[p].resize(nb_nodes_per_proc(p), -1);
			}

			this->fillNodesType();

			auto is_master = [](auto && flag) {
			return (flag & NodeFlag::_shared_mask) == NodeFlag::_master;
			};

			auto is_local = [](auto && flag) {
			return (flag & NodeFlag::_shared_mask) == NodeFlag::_normal;
			};

			for (auto p : arange(nb_proc)) {
			auto & nodes_flags = nodes_flags_per_proc[p];

			if (p != root) {
			AKANTU_DEBUG_INFO(
			"Receiving first nodes types from proc "
			<< p << " "
			<< Tag::genTag(this->rank, this->message_count, Tag::_nodes_type));
			comm.receive(nodes_flags, p, Tag::genTag(p, 0, Tag::_nodes_type));
			} else {
			nodes_flags.copy(this->getNodesFlags());
			}

			// stack all processors claiming to be master for a node
			for (auto local_node : arange(nb_nodes_per_proc(p))) {
			auto global_node = nodes_per_proc[p](local_node);

			if (is_master(nodes_flags(local_node))) {
			nodes_to_proc.insert(
			std::make_pair(global_node, std::make_pair(p, local_node)));

			} else if (is_local(nodes_flags(local_node))) {
			nodes_pranks[global_node] = p;
			}
			}
			}

			for (auto i : arange(mesh.getNbGlobalNodes())) {
			auto it_range = nodes_to_proc.equal_range(i);
			if (it_range.first == nodes_to_proc.end() \|\| it_range.first->first != i) {
			continue;
			}

			// pick the first processor out of the multi-map as the actual master
			UInt master_proc = (it_range.first)->second.first;
			nodes_pranks[i] = master_proc;

			for (auto && data : range(it_range.first, it_range.second)) {
			auto proc = data.second.first;
			auto node = data.second.second;

			if (proc != master_proc) {
			// store the info on all the slaves for a given master
			nodes_flags_per_proc[proc](node) = NodeFlag::_slave;
			nodes_to_send_per_proc[master_proc].push_back(proc);
			nodes_to_send_per_proc[master_proc].push_back(i);
			}
			}
			}

			/// Fills the nodes prank per proc
			for (auto && data : zip(arange(nb_proc), nodes_per_proc, nodes_prank_per_proc,
			nodes_flags_per_proc)) {
			for (auto && node_data :
			zip(std::get<1>(data), std::get<2>(data), std::get<3>(data))) {
			if (std::get<2>(node_data) == NodeFlag::_normal) {
			std::get<1>(node_data) = std::get<0>(data);
			} else {
			std::get<1>(node_data) = nodes_pranks(std::get<0>(node_data));
			}
			}
			}

			std::vector<CommunicationRequest> requests_send_type;
			std::vector<CommunicationRequest> requests_send_master_info;
			for (UInt p = 0; p < nb_proc; ++p) {
			if (p != root) {
			auto tag0 = Tag::genTag(this->rank, 0, Tag::_nodes_type);
			AKANTU_DEBUG_INFO("Sending nodes types to proc " << p << " " << tag0);
			requests_send_type.push_back(
			comm.asyncSend(nodes_flags_per_proc[p], p, tag0));

			auto tag2 = Tag::genTag(this->rank, 2, Tag::_nodes_type);
			AKANTU_DEBUG_INFO("Sending nodes pranks to proc " << p << " " << tag2);
			requests_send_type.push_back(
			comm.asyncSend(nodes_prank_per_proc[p], p, tag2));

			auto & nodes_to_send = nodes_to_send_per_proc[p];

			auto tag1 = Tag::genTag(this->rank, 1, Tag::_nodes_type);
			AKANTU_DEBUG_INFO("Sending nodes master info to proc " << p << " "
			<< tag1);
			requests_send_master_info.push_back(
			comm.asyncSend(nodes_to_send, p, tag1));
			} else {
			this->getNodesFlags().copy(nodes_flags_per_proc[p]);
			for (auto && data : enumerate(nodes_prank_per_proc[p])) {
			auto node = std::get<0>(data);
			if (not(mesh.isMasterNode(node) or mesh.isLocalNode(node))) {
			this->setNodePrank(node, std::get<1>(data));
			}
			}

			this->fillCommunicationScheme(nodes_to_send_per_proc[root]);
			}
			}

			Communicator::waitAll(requests_send_type);
			Communicator::freeCommunicationRequest(requests_send_type);

			Communicator::waitAll(requests_send_master_info);
			Communicator::freeCommunicationRequest(requests_send_master_info);
			}

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::synchronizeGroups() {
			AKANTU_DEBUG_IN();

			UInt nb_total_nodes = mesh.getNbGlobalNodes();

			DynamicCommunicationBuffer buffer;

			using NodeToGroup = std::vector<std::vector<std::string>>;
			NodeToGroup node_to_group;
			node_to_group.resize(nb_total_nodes);

			for (auto & ng : mesh.iterateNodeGroups()) {
			std::string name = ng.getName();

			for (auto && node : ng.getNodes()) {
			node_to_group[node].push_back(name);
			}

			ng.clear();
			}

			buffer << node_to_group;

			std::vector<CommunicationRequest> requests;
			for (UInt p = 0; p < nb_proc; ++p) {
			if (p == this->rank) {
			continue;
			}
			AKANTU_DEBUG_INFO("Sending node groups to proc "
			<< p << " "
			<< Tag::genTag(this->rank, p, Tag::_node_group));
			requests.push_back(comm.asyncSend(
			buffer, p, Tag::genTag(this->rank, p, Tag::_node_group)));
			}

			this->fillNodeGroupsFromBuffer(buffer);

			Communicator::waitAll(requests);
			Communicator::freeCommunicationRequest(requests);
			requests.clear();

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::synchronizePeriodicity() {
			bool is_periodic = mesh.isPeriodic();
			comm.broadcast(is_periodic, root);

			if (not is_periodic) {
			return;
			}

			std::vector<CommunicationRequest> requests;
			std::vector<Array<UInt>> periodic_info_to_send_per_proc;
			for (auto p : arange(nb_proc)) {
			periodic_info_to_send_per_proc.emplace_back(0, 2);
			auto && periodic_info = periodic_info_to_send_per_proc.back();

			for (UInt proc_local_node : arange(nb_nodes_per_proc(p))) {
			UInt global_node = nodes_per_proc[p](proc_local_node);
			if ((all_periodic_flags[global_node] & NodeFlag::_periodic_mask) ==
			NodeFlag::_periodic_slave) {
			periodic_info.push_back(
			Vector<UInt>{global_node, mesh.getPeriodicMaster(global_node)});
			}
			}

			if (p == root) {
			continue;
			}

			auto && tag = Tag::genTag(this->rank, p, Tag::_periodic_slaves);
			AKANTU_DEBUG_INFO("Sending periodic info to proc " << p << " " << tag);
			requests.push_back(comm.asyncSend(periodic_info, p, tag));
			}

			CommunicationStatus status;
			std::vector<DynamicCommunicationBuffer> buffers(nb_proc);
			std::vector<std::vector<UInt>> proc_missings(nb_proc);
			auto nodes_it = all_nodes.begin(spatial_dimension);

			for (UInt p = 0; p < nb_proc; ++p) {
			auto & proc_missing = proc_missings[p];
			if (p != root) {
			auto && tag = Tag::genTag(p, 0, Tag::_periodic_nodes);
			comm.probe<UInt>(p, tag, status);

			proc_missing.resize(status.size());
			comm.receive(proc_missing, p, tag);
			} else {
			fillPeriodicPairs(periodic_info_to_send_per_proc[root], proc_missing);
			}

			auto & buffer = buffers[p];
			buffer.reserve((spatial_dimension * sizeof(Real) + sizeof(Int)) *
			proc_missing.size());
			buffer << proc_missing.size();
			for (auto && node : proc_missing) {
			buffer << *(nodes_it + node);
			buffer << nodes_pranks(node);
			}
			}

			for (UInt p = 0; p < nb_proc; ++p) {
			for (auto && node : proc_missings[p]) {
			auto & buffer = buffers[nodes_pranks(node)];
			buffer << node;
			buffer << p;
			}
			}

			for (UInt p = 0; p < nb_proc; ++p) {
			if (p != root) {
			auto && tag_send = Tag::genTag(p, 1, Tag::_periodic_nodes);
			requests.push_back(comm.asyncSend(buffers[p], p, tag_send));
			} else {
			receiveMissingPeriodic(buffers[p]);
			}
			}

			Communicator::waitAll(requests);
			Communicator::freeCommunicationRequest(requests);
			}

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::fillTagBuffers(
			std::vector<DynamicCommunicationBuffer> & buffers,
			const std::string & tag_name) {
			#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, _, elem) \
			case MeshDataTypeCode::BOOST_PP_TUPLE_ELEM(2, 0, elem): { \
			auto & nodal_data = \
			mesh.getNodalData<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(tag_name); \
			for (auto && data : enumerate(nodes_per_proc)) { \
			auto proc = std::get<0>(data); \
			auto & nodes = std::get<1>(data); \
			auto & buffer = buffers[proc]; \
			for (auto & node : nodes) { \
			for (auto i : arange(nodal_data.getNbComponent())) { \
			buffer << nodal_data(node, i); \
			} \
			} \
			} \
			break; \
			}

			MeshDataTypeCode data_type_code =
			mesh.getTypeCode(tag_name, MeshDataType::_nodal);
			switch (data_type_code) {
			BOOST_PP_SEQ_FOR_EACH(AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA, ,
			AKANTU_MESH_DATA_TYPES)
			default:
			AKANTU_ERROR("Could not obtain the type of tag" << tag_name << "!");
			break;
			}
			#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
			} // namespace akantu

			/* -------------------------------------------------------------------------- */
			void MasterNodeInfoPerProc::synchronizeTags() {
			/// tag info
			auto tag_names = mesh.getTagNames();

			DynamicCommunicationBuffer tags_buffer;
			for (auto && tag_name : tag_names) {
			tags_buffer << tag_name;
			tags_buffer << mesh.getTypeCode(tag_name, MeshDataType::_nodal);
			tags_buffer << mesh.getNbComponent(tag_name);
			}

			AKANTU_DEBUG_INFO(
			"Broadcasting the information about the nodes mesh data tags: ("
			<< tags_buffer.size() << ").");
			comm.broadcast(tags_buffer, root);

			for (auto && tag_data : enumerate(tag_names)) {
			auto tag_count = std::get<0>(tag_data);
			auto & tag_name = std::get<1>(tag_data);
			std::vector<DynamicCommunicationBuffer> buffers;
			std::vector<CommunicationRequest> requests;
			buffers.resize(nb_proc);
			fillTagBuffers(buffers, tag_name);
			for (auto && data : enumerate(buffers)) {
			auto && proc = std::get<0>(data);
			auto & buffer = std::get<1>(data);
			if (proc == root) {
			fillNodalData(buffer, tag_name);
			} else {
			auto && tag = Tag::genTag(this->rank, tag_count, Tag::_mesh_data);
			requests.push_back(comm.asyncSend(buffer, proc, tag));
			}
			}

			Communicator::waitAll(requests);
			Communicator::freeCommunicationRequest(requests);
			}
			}

			/* -------------------------------------------------------------------------- */
			/* -------------------------------------------------------------------------- */

			/* -------------------------------------------------------------------------- */
			SlaveNodeInfoPerProc::SlaveNodeInfoPerProc(NodeSynchronizer & synchronizer,
			UInt message_cnt, UInt root)
			: NodeInfoPerProc(synchronizer, message_cnt, root) {
			UInt nb_global_nodes = 0;
			comm.broadcast(nb_global_nodes, root);
			this->setNbGlobalNodes(nb_global_nodes);
			}

			/* -------------------------------------------------------------------------- */
			void SlaveNodeInfoPerProc::synchronizeNodes() {
			AKANTU_DEBUG_INFO("Sending list of nodes to proc "
			<< root << " " << Tag::genTag(this->rank, 0, Tag::_nb_nodes)
			<< " " << Tag::genTag(this->rank, 0, Tag::_nodes));
			Array<UInt> & local_ids = this->getNodesGlobalIds();
			Array<Real> & nodes = this->getNodes();

			UInt nb_nodes = local_ids.size();
			comm.send(nb_nodes, root, Tag::genTag(this->rank, 0, Tag::_nb_nodes));
			comm.send(local_ids, root, Tag::genTag(this->rank, 0, Tag::_nodes));

			/* --------<<<<-COORDINATES---------------------------------------------- */
			nodes.resize(nb_nodes);
			AKANTU_DEBUG_INFO("Receiving coordinates from proc "
			<< root << " " << Tag::genTag(root, 0, Tag::_coordinates));
			comm.receive(nodes, root, Tag::genTag(root, 0, Tag::_coordinates));
			}

			/* -------------------------------------------------------------------------- */
			void SlaveNodeInfoPerProc::synchronizeTypes() {
			this->fillNodesType();

			auto & nodes_flags = this->getNodesFlags();

			AKANTU_DEBUG_INFO("Sending first nodes types to proc "
			<< root << ""
			<< Tag::genTag(this->rank, 0, Tag::_nodes_type));
			comm.send(nodes_flags, root, Tag::genTag(this->rank, 0, Tag::_nodes_type));

			AKANTU_DEBUG_INFO("Receiving nodes types from proc "
			<< root << " " << Tag::genTag(root, 0, Tag::_nodes_type));
			comm.receive(nodes_flags, root, Tag::genTag(root, 0, Tag::_nodes_type));

			Array<Int> nodes_prank(nodes_flags.size());

			AKANTU_DEBUG_INFO("Receiving nodes pranks from proc "
			<< root << " " << Tag::genTag(root, 2, Tag::_nodes_type));
			comm.receive(nodes_prank, root, Tag::genTag(root, 2, Tag::_nodes_type));
			for (auto && data : enumerate(nodes_prank)) {
			auto node = std::get<0>(data);
			if (not(mesh.isMasterNode(node) or mesh.isLocalNode(node))) {
			this->setNodePrank(node, std::get<1>(data));
			}
			}

			AKANTU_DEBUG_INFO("Receiving nodes master info from proc "
			<< root << " " << Tag::genTag(root, 1, Tag::_nodes_type));
			CommunicationStatus status;
			comm.probe<UInt>(root, Tag::genTag(root, 1, Tag::_nodes_type), status);

			Array<UInt> nodes_master_info(status.size());
			comm.receive(nodes_master_info, root, Tag::genTag(root, 1, Tag::_nodes_type));

			this->fillCommunicationScheme(nodes_master_info);
			}

			/* -------------------------------------------------------------------------- */
			void SlaveNodeInfoPerProc::synchronizeGroups() {
			AKANTU_DEBUG_IN();

			AKANTU_DEBUG_INFO("Receiving node groups from proc "
			<< root << " "
			<< Tag::genTag(root, this->rank, Tag::_node_group));

			DynamicCommunicationBuffer buffer;
			comm.receive(buffer, root, Tag::genTag(root, this->rank, Tag::_node_group));

			this->fillNodeGroupsFromBuffer(buffer);

			AKANTU_DEBUG_OUT();
			}

			/* -------------------------------------------------------------------------- */
			void SlaveNodeInfoPerProc::synchronizePeriodicity() {
			bool is_periodic;
			comm.broadcast(is_periodic, root);

			if (not is_periodic) {
			return;
			}

			CommunicationStatus status;
			auto && tag = Tag::genTag(root, this->rank, Tag::_periodic_slaves);
			comm.probe<UInt>(root, tag, status);

			Array<UInt> periodic_info(status.size() / 2, 2);
			comm.receive(periodic_info, root, tag);

			std::vector<UInt> proc_missing;
			fillPeriodicPairs(periodic_info, proc_missing);

			auto && tag_missing_request =
			Tag::genTag(this->rank, 0, Tag::_periodic_nodes);
			comm.send(proc_missing, root, tag_missing_request);

			DynamicCommunicationBuffer buffer;
			auto && tag_missing = Tag::genTag(this->rank, 1, Tag::_periodic_nodes);
			comm.receive(buffer, root, tag_missing);

			receiveMissingPeriodic(buffer);
			}

			/* -------------------------------------------------------------------------- */
			void SlaveNodeInfoPerProc::synchronizeTags() {
			DynamicCommunicationBuffer tags_buffer;
			comm.broadcast(tags_buffer, root);

			std::vector<std::string> tag_names;
			while (tags_buffer.getLeftToUnpack() > 0) {
			std::string name;
			MeshDataTypeCode code;
			UInt nb_components;
			tags_buffer >> name;
			tags_buffer >> code;
			tags_buffer >> nb_components;

			mesh.registerNodalData(name, nb_components, code);
			tag_names.push_back(name);
			}

			for (auto && tag_data : enumerate(tag_names)) {
			auto tag_count = std::get<0>(tag_data);
			auto & tag_name = std::get<1>(tag_data);
			DynamicCommunicationBuffer buffer;
			auto && tag = Tag::genTag(this->root, tag_count, Tag::_mesh_data);
			comm.receive(buffer, this->root, tag);

			fillNodalData(buffer, tag_name);
			}
			}

			} // namespace akantu

rAKA/src/synchronizer/node_info_per_processor.ccbe9997e57239features/python-doc

node_info_per_processor.ccView Options

rAKA/src/synchronizer/node_info_per_processor.cc
be9997e57239features/python-doc

node_info_per_processor.cc
View Options