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algebraic_parser.hh
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			/**
			* Copyright (©) 2013-2023 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* This file is part of Akantu
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*/

			/* -------------------------------------------------------------------------- */
			#include "aka_common.hh"
			#include "aka_random_generator.hh"
			/* -------------------------------------------------------------------------- */
			// Boost
			#include <boost/config/warning_disable.hpp>
			#include <boost/phoenix.hpp>
			#include <boost/spirit/include/qi.hpp>
			/* -------------------------------------------------------------------------- */

			#ifndef AKANTU_ALGEBRAIC_PARSER_HH_
			#define AKANTU_ALGEBRAIC_PARSER_HH_

			namespace spirit = boost::spirit;
			namespace qi = boost::spirit::qi;
			namespace lbs = boost::spirit::qi::labels;
			namespace ascii = boost::spirit::ascii;
			namespace phx = boost::phoenix;

			namespace akantu {
			namespace parser {
			struct algebraic_error_handler_ {
			template <typename, typename, typename> struct result {
			using type = void;
			};

			template <typename Iterator>
			void operator()(qi::info const & what, Iterator err_pos,
			Iterator last) const {
			AKANTU_EXCEPTION(
			"Error! Expecting "
			<< what // what failed?
			<< " here: \""
			<< std::string(err_pos, last) // iterators to error-pos, end
			<< "\"");
			}
			};

			static Real my_min(Real a, Real b) { return std::min(a, b); }
			static Real my_max(Real a, Real b) { return std::max(a, b); }
			static Real my_pow(Real a, Real b) { return std::pow(a, b); }

			static Real eval_param(const ID & a, const ParserSection & section) {
			return section.getParameter(a, _ppsc_current_and_parent_scope);
			}

			static Real unary_func(Real (*func)(Real), Real a) { return func(a); }

			static Real binary_func(Real (*func)(Real, Real), Real a, Real b) {
			return func(a, b);
			}

			template <class Iterator, typename Skipper = spirit::unused_type>
			struct AlgebraicGrammar : qi::grammar<Iterator, Real(), Skipper> {
			AlgebraicGrammar(const ParserSection & section)
			: AlgebraicGrammar::base_type(start, "algebraic_grammar"),
			section(section) {
			// phx::function<lazy_pow_> lazy_pow;
			// phx::function<lazy_unary_func_> lazy_unary_func;
			// phx::function<lazy_binary_func_> lazy_binary_func;
			// phx::function<lazy_eval_param_> lazy_eval_param;
			/* clang-format off */
			start
			= expr.alias()
			;

			expr
			= term [ lbs::_val = lbs::_1 ]
			>> *( ('+' > term [ lbs::_val += lbs::_1 ])
			\| ('-' > term [ lbs::_val -= lbs::_1 ])
			)
			;

			term
			= factor [ lbs::_val = lbs::_1 ]
			>> ( ('' > factor [ lbs::_val *= lbs::_1 ])
			\| ('/' > factor [ lbs::_val /= lbs::_1 ])
			)
			;

			factor
			= number [ lbs::_val = lbs::_1 ]
			>> ("*" > number [ lbs::_val = phx::bind(&my_pow, lbs::_val, lbs::_1) ])
			;

			number
			= real [ lbs::_val = lbs::_1 ]
			\| ('-' > number [ lbs::_val = -lbs::_1 ])
			\| ('+' > number [ lbs::_val = lbs::_1 ])
			\| constant [ lbs::_val = lbs::_1 ]
			\| function [ lbs::_val = lbs::_1 ]
			\| ('(' > expr > ')') [ lbs::_val = lbs::_1 ]
			\| variable [ lbs::_val = lbs::_1 ]
			;

			function
			= (qi::no_case[unary_function]
			> '('
			> expr
			> ')') [ lbs::_val = phx::bind(&unary_func, lbs::_1, lbs::_2) ]
			\| (qi::no_case[binary_function]
			> '(' >> expr
			> ',' >> expr
			> ')') [ lbs::_val = phx::bind(&binary_func ,lbs::_1, lbs::_2, lbs::_3) ]
			;

			variable
			= key [ lbs::_val = phx::bind(&eval_param, lbs::_1, section) ]
			;

			key
			= qi::no_skip[qi::char_("a-zA-Z_") >> *qi::char_("a-zA-Z_0-9")] // coming from the InputFileGrammar
			;

			#ifndef M_PI
			# define M_PI 3.14159265358979323846
			#endif
			#ifndef M_E
			# define M_E 2.7182818284590452354
			#endif
			constant.add
			("pi", M_PI)
			("e", M_E);

			unary_function.add
			("abs" , &std::abs )
			("acos" , &std::acos )
			("asin" , &std::asin )
			("atan" , &std::atan )
			("ceil" , &std::ceil )
			("cos" , &std::cos )
			("cosh" , &std::cosh )
			("exp" , &std::exp )
			("floor" , &std::floor )
			("log10" , &std::log10 )
			("log" , &std::log )
			("sin" , &std::sin )
			("sinh" , &std::sinh )
			("sqrt" , &std::sqrt )
			("tan" , &std::tan )
			("tanh" , &std::tanh )
			("acosh" , &std::acosh )
			("asinh" , &std::asinh )
			("atanh" , &std::atanh )
			("exp2" , &std::exp2 )
			("expm1" , &std::expm1 )
			("log1p" , &std::log1p )
			("log2" , &std::log2 )
			("erf" , &std::erf )
			("erfc" , &std::erfc )
			("lgamma", &std::lgamma)
			("tgamma", &std::tgamma)
			("trunc" , &std::trunc )
			("round" , &std::round )
			// ("crbt" , &std::crbt )
			;

			binary_function.add
			("pow" , &std::pow )
			("min" , &parser::my_min)
			("max" , &parser::my_max)
			("atan2", &std::atan2 )
			("fmod" , &std::fmod )
			("hypot", &std::hypot )
			;

			#if !defined(AKANTU_NDEBUG)
			phx::function<algebraic_error_handler_> const error_handler = algebraic_error_handler_();
			qi::on_error<qi::fail>(start, error_handler(lbs::_4, lbs::_3, lbs::_2));
			#endif

			expr .name("expression");
			term .name("term");
			factor .name("factor");
			number .name("numerical-value");
			variable.name("variable");
			function.name("function");

			constant.name("constants-list");
			unary_function.name("unary-functions-list");
			binary_function.name("binary-functions-list");

			#if !defined AKANTU_NDEBUG
			if(AKANTU_DEBUG_TEST(dblDebug)) {
			qi::debug(expr);
			qi::debug(term);
			qi::debug(factor);
			qi::debug(number);
			qi::debug(variable);
			qi::debug(function);
			}
			#endif
			}
			/* clang-format on */
			private:
			qi::rule<Iterator, Real(), Skipper> start;
			qi::rule<Iterator, Real(), Skipper> expr;
			qi::rule<Iterator, Real(), Skipper> term;
			qi::rule<Iterator, Real(), Skipper> factor;
			qi::rule<Iterator, Real(), Skipper> number;
			qi::rule<Iterator, Real(), Skipper> variable;
			qi::rule<Iterator, Real(), Skipper> function;

			qi::rule<Iterator, std::string(), Skipper> key;

			qi::real_parser<Real, qi::real_policies<Real>> real;

			qi::symbols<char, Real> constant;
			qi::symbols<char, Real (*)(Real)> unary_function;
			qi::symbols<char, Real (*)(Real, Real)> binary_function;

			const ParserSection & section;
			};

			/* ---------------------------------------------------------------------- */
			/* Vector Parser */
			/* ---------------------------------------------------------------------- */
			struct parsable_vector {
			operator Vector<Real>() {
			Vector<Real> tmp(_cells.size());
			auto it = _cells.begin();
			for (Int i = 0; it != _cells.end(); ++it, ++i) {
			tmp(i) = *it;
			}
			return tmp;
			}

			std::vector<Real> _cells;
			};

			inline std::ostream & operator<<(std::ostream & stream,
			const parsable_vector & pv) {
			stream << "pv[";
			auto it = pv._cells.begin();
			if (it != pv._cells.end()) {
			stream << *it;
			for (++it; it != pv._cells.end(); ++it) {
			stream << ", " << *it;
			}
			}
			stream << "]";
			return stream;
			}

			struct parsable_matrix {
			operator Matrix<Real>() {
			size_t cols = 0;
			auto it_rows = _cells.begin();
			for (; it_rows != _cells.end(); ++it_rows) {
			cols = std::max(cols, it_rows->_cells.size());
			}

			Matrix<Real> tmp(_cells.size(), cols);
			tmp.fill(0.);

			it_rows = _cells.begin();
			for (Int i = 0; it_rows != _cells.end(); ++it_rows, ++i) {
			auto it_cols = it_rows->_cells.begin();
			for (Int j = 0; it_cols != it_rows->_cells.end(); ++it_cols, ++j) {
			tmp(i, j) = *it_cols;
			}
			}
			return tmp;
			}

			std::vector<parsable_vector> _cells;
			};

			inline std::ostream & operator<<(std::ostream & stream,
			const parsable_matrix & pm) {
			stream << "pm[";
			auto it = pm._cells.begin();
			if (it != pm._cells.end()) {
			stream << *it;
			for (++it; it != pm._cells.end(); ++it) {
			stream << ", " << *it;
			}
			}
			stream << "]";
			return stream;
			}

			/* ---------------------------------------------------------------------- */
			template <typename T1, typename T2>
			static void cont_add(T1 & cont, T2 & value) {
			cont._cells.push_back(value);
			}

			/* ---------------------------------------------------------------------- */
			template <class Iterator, typename Skipper = spirit::unused_type>
			struct VectorGrammar : qi::grammar<Iterator, parsable_vector(), Skipper> {
			VectorGrammar(const ParserSection & section)
			: VectorGrammar::base_type(start, "vector_algebraic_grammar"),
			number(section) {

			start = '[' > vector > ']';

			vector =
			(number[phx::bind(&cont_add<parsable_vector, Real>, lbs::_a,
			lbs::_1)] >>
			*(',' >> number[phx::bind(&cont_add<parsable_vector, Real>, lbs::_a,
			lbs::_1)]))[lbs::_val = lbs::_a];

			#if !defined(AKANTU_NDEBUG)
			phx::function<algebraic_error_handler_> const error_handler =
			algebraic_error_handler_();
			qi::on_error<qi::fail>(start, error_handler(lbs::_4, lbs::_3, lbs::_2));
			#endif

			start.name("start");
			vector.name("vector");
			number.name("value");

			#if !defined AKANTU_NDEBUG
			if (AKANTU_DEBUG_TEST(dblDebug)) {
			qi::debug(start);
			qi::debug(vector);
			}
			#endif
			}

			private:
			qi::rule<Iterator, parsable_vector(), Skipper> start;
			qi::rule<Iterator, parsable_vector(), qi::locals<parsable_vector>, Skipper>
			vector;
			qi::rule<Iterator, Real(), Skipper> value;
			AlgebraicGrammar<Iterator, Skipper> number;
			};

			/* ---------------------------------------------------------------------- */
			static inline bool vector_eval(const ID & a, const ParserSection & section,
			parsable_vector & result) {
			std::string value = section.getParameter(a, _ppsc_current_and_parent_scope);
			std::string::const_iterator b = value.begin();
			std::string::const_iterator e = value.end();
			parser::VectorGrammar<std::string::const_iterator, qi::space_type> grammar(
			section);
			return qi::phrase_parse(b, e, grammar, qi::space, result);
			}

			/* ---------------------------------------------------------------------- */
			template <class Iterator, typename Skipper = spirit::unused_type>
			struct MatrixGrammar : qi::grammar<Iterator, parsable_matrix(), Skipper> {
			MatrixGrammar(const ParserSection & section)
			: MatrixGrammar::base_type(start, "matrix_algebraic_grammar"),
			vector(section) {

			start = '[' >> matrix >> ']';

			matrix =
			(rows[phx::bind(&cont_add<parsable_matrix, parsable_vector>, lbs::_a,
			lbs::_1)] >>
			*(',' >> rows[phx::bind(&cont_add<parsable_matrix, parsable_vector>,
			lbs::_a, lbs::_1)]))[lbs::_val = lbs::_a];

			rows = eval_vector \| vector;

			eval_vector = (key[lbs::_pass = phx::bind(&vector_eval, lbs::_1, section,
			lbs::_a)])[lbs::_val = lbs::_a];

			key = qi::char_("a-zA-Z_") >>
			*qi::char_("a-zA-Z_0-9") // coming from the InputFileGrammar
			;

			#if !defined(AKANTU_NDEBUG)
			phx::function<algebraic_error_handler_> const error_handler =
			algebraic_error_handler_();
			qi::on_error<qi::fail>(start, error_handler(lbs::_4, lbs::_3, lbs::_2));
			#endif

			start.name("matrix");
			matrix.name("all_rows");
			rows.name("rows");
			vector.name("vector");
			eval_vector.name("eval_vector");

			#ifndef AKANTU_NDEBUG
			if (AKANTU_DEBUG_TEST(dblDebug)) {
			qi::debug(start);
			qi::debug(matrix);
			qi::debug(rows);
			qi::debug(eval_vector);
			qi::debug(key);
			}
			#endif
			}

			private:
			qi::rule<Iterator, parsable_matrix(), Skipper> start;
			qi::rule<Iterator, parsable_matrix(), qi::locals<parsable_matrix>, Skipper>
			matrix;
			qi::rule<Iterator, parsable_vector(), Skipper> rows;
			qi::rule<Iterator, parsable_vector(), qi::locals<parsable_vector>, Skipper>
			eval_vector;
			qi::rule<Iterator, std::string(), Skipper> key;
			VectorGrammar<Iterator, Skipper> vector;
			};

			/* ---------------------------------------------------------------------- */
			/* Randon Generator */
			/* ---------------------------------------------------------------------- */
			struct ParsableRandomGenerator {
			ParsableRandomGenerator(
			Real base = Real(),
			const RandomDistributionType & type =
			RandomDistributionType::_not_defined,
			const parsable_vector & parameters = parsable_vector())
			: base(base), type(type), parameters(parameters) {}

			Real base{0.};
			RandomDistributionType type{RandomDistributionType::_not_defined};
			parsable_vector parameters;
			};

			inline std::ostream & operator<<(std::ostream & stream,
			const ParsableRandomGenerator & prg) {
			stream << "prg[" << prg.base << " " << Int(prg.type) << " "
			<< prg.parameters << "]";
			return stream;
			}

			/* ---------------------------------------------------------------------- */
			template <class Iterator, typename Skipper = spirit::unused_type>
			struct RandomGeneratorGrammar
			: qi::grammar<Iterator, ParsableRandomGenerator(), Skipper> {
			RandomGeneratorGrammar(const ParserSection & section)
			: RandomGeneratorGrammar::base_type(start, "random_generator_grammar"),
			number(section) {

			start = generator.alias();

			generator =
			qi::hold[distribution[lbs::_val = lbs::_1]] \|
			number[lbs::_val = phx::construct<ParsableRandomGenerator>(lbs::_1)];

			distribution = (number >> generator_type >> '[' >> generator_params >>
			']')[lbs::_val = phx::construct<ParsableRandomGenerator>(
			lbs::_1, lbs::_2, lbs::_3)];

			generator_params =
			(number[phx::bind(&cont_add<parsable_vector, Real>, lbs::_a,
			lbs::_1)] >>
			*(',' > number[phx::bind(&cont_add<parsable_vector, Real>, lbs::_a,
			lbs::_1)]))[lbs::_val = lbs::_a];

			/* clang-format off */
			generator_type.add
			("uniform" , RandomDistributionType::_uniform )
			("exponential" , RandomDistributionType::_exponential )
			("gamma" , RandomDistributionType::_gamma )
			("weibull" , RandomDistributionType::_weibull )
			("extreme_value", RandomDistributionType::_extreme_value)
			("normal" , RandomDistributionType::_normal )
			("lognormal" , RandomDistributionType::_lognormal )
			("chi_squared" , RandomDistributionType::_chi_squared )
			("cauchy" , RandomDistributionType::_cauchy )
			("fisher_f" , RandomDistributionType::_fisher_f )
			("student_t" , RandomDistributionType::_student_t );
			/* clang-format on */

			#if !defined(AKANTU_NDEBUG)
			phx::function<algebraic_error_handler_> const error_handler =
			algebraic_error_handler_();
			qi::on_error<qi::fail>(start, error_handler(lbs::_4, lbs::_3, lbs::_2));
			#endif

			start.name("random-generator");
			generator.name("random-generator");
			distribution.name("random-distribution");
			generator_type.name("generator-type");
			generator_params.name("generator-parameters");
			number.name("number");

			#ifndef AKANTU_NDEBUG
			if (AKANTU_DEBUG_TEST(dblDebug)) {
			qi::debug(generator);
			qi::debug(distribution);
			qi::debug(generator_params);
			}
			#endif
			}

			private:
			qi::rule<Iterator, ParsableRandomGenerator(), Skipper> start;
			qi::rule<Iterator, ParsableRandomGenerator(), Skipper> generator;
			qi::rule<Iterator, ParsableRandomGenerator(), Skipper> distribution;
			qi::rule<Iterator, parsable_vector(), qi::locals<parsable_vector>, Skipper>
			generator_params;
			AlgebraicGrammar<Iterator, Skipper> number;
			qi::symbols<char, RandomDistributionType> generator_type;
			};
			} // namespace parser
			} // namespace akantu

			#endif /* AKANTU_ALGEBRAIC_PARSER_HH_ */

rAKA/src/io/parser/algebraic_parser.hhd675106e655cfeatures/updating_cover…

algebraic_parser.hhView Options

rAKA/src/io/parser/algebraic_parser.hh
d675106e655cfeatures/updating_cover…

algebraic_parser.hh
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