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dof_manager_default.cc
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/**
* @file dof_manager_default.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date Tue Aug 11 16:21:01 2015
*
* @brief Implementation of the default DOFManager
*
* @section LICENSE
*
* Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "dof_manager_default.hh"
#include "sparse_matrix_aij.hh"
#include "time_step_solver_default.hh"
#include "static_communicator.hh"
/* -------------------------------------------------------------------------- */
__BEGIN_AKANTU__
/* -------------------------------------------------------------------------- */
inline void DOFManagerDefault::addSymmetricElementalMatrixToSymmetric(
SparseMatrixAIJ & matrix, const Matrix<Real> & elementary_mat,
const Vector<UInt> & equation_numbers, UInt max_size) {
for (UInt i = 0; i < elementary_mat.rows(); ++i) {
UInt c_irn = equation_numbers(i);
if (c_irn < max_size) {
for (UInt j = i; j < elementary_mat.cols(); ++j) {
UInt c_jcn = equation_numbers(j);
if (c_jcn < max_size) {
matrix(c_irn, c_jcn) += elementary_mat(i, j);
}
}
}
}
}
/* -------------------------------------------------------------------------- */
inline void DOFManagerDefault::addUnsymmetricElementalMatrixToSymmetric(
SparseMatrixAIJ & matrix, const Matrix<Real> & elementary_mat,
const Vector<UInt> & equation_numbers, UInt max_size) {
for (UInt i = 0; i < elementary_mat.rows(); ++i) {
UInt c_irn = equation_numbers(i);
if (c_irn < max_size) {
for (UInt j = 0; j < elementary_mat.cols(); ++j) {
UInt c_jcn = equation_numbers(j);
if (c_jcn < max_size) {
if (c_jcn >= c_irn) {
matrix(c_irn, c_jcn) += elementary_mat(i, j);
}
}
}
}
}
}
/* -------------------------------------------------------------------------- */
inline void DOFManagerDefault::addElementalMatrixToUnsymmetric(
SparseMatrixAIJ & matrix, const Matrix<Real> & elementary_mat,
const Vector<UInt> & equation_numbers, UInt max_size) {
for (UInt i = 0; i < elementary_mat.rows(); ++i) {
UInt c_irn = equation_numbers(i);
if (c_irn < max_size) {
for (UInt j = 0; j < elementary_mat.cols(); ++j) {
UInt c_jcn = equation_numbers(j);
if (c_jcn < max_size) {
matrix(c_irn, c_jcn) += elementary_mat(i, j);
}
}
}
}
}
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
DOFManagerDefault::DOFManagerDefault(const Mesh & mesh, const ID & id,
const MemoryID & memory_id)
: DOFManager(mesh, id, memory_id) {}
/* -------------------------------------------------------------------------- */
DOFManagerDefault::~DOFManagerDefault() {}
/* -------------------------------------------------------------------------- */
void DOFManagerDefault::registerDOFs(const ID & dof_id,
Array<Real> & dofs_array,
DOFSupportType & support_type) {
// stores the current numbers of dofs
UInt local_nb_dofs = this->local_system_size;
UInt pure_local_nb_dofs = this->pure_local_system_size;
// update or create the dof_data
DOFManager::registerDOFs(dof_id, dofs_array, support_type);
// Count the number of pure local dofs per proc
StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
UInt prank = comm.whoAmI();
UInt psize = comm.getNbProc();
Array<UInt> nb_dofs_per_proc(psize);
nb_dofs_per_proc(prank) = this->pure_local_system_size - pure_local_nb_dofs;
comm.allGather(nb_dofs_per_proc);
UInt first_global_dofs_id = std::accumulate(
nb_dofs_per_proc.begin(), nb_dofs_per_proc.begin() + prank, 0);
// nb local dofs to account for
UInt nb_dofs = this->local_system_size - local_nb_dofs;
DOFData & dof_data = *dofs[dof_id];
this->global_equation_number.resize(this->local_system_size);
// set the equation numbers
if (support_type == _dst_nodal) {
UInt first_dof_id = local_nb_dofs;
dof_data.local_equation_number.resize(nb_dofs);
for (UInt d = 0; d < nb_dofs; ++d) {
UInt local_eq_num = first_dof_id + d;
dof_data.local_equation_number(d) = local_eq_num;
this->global_equation_number(local_eq_num) = first_global_dofs_id + d;
}
}
}
/* -------------------------------------------------------------------------- */
SparseMatrix & DOFManagerDefault::getNewMatrix(const ID & matrix_id,
const MatrixType & matrix_type) {
std::stringstream sstr;
sstr << this->id << ":" << matrix_id;
SparseMatrix * sm =
new SparseMatrixAIJ(*this, matrix_type, sstr.str(), this->memory_id);
this->registerSparseMatrix(matrix_id, *sm);
return *sm;
}
/* -------------------------------------------------------------------------- */
SparseMatrix & DOFManagerDefault::getNewMatrix(const ID & matrix_id,
const ID & matrix_to_copy_id) {
std::stringstream sstr;
sstr << this->id << ":" << matrix_id;
SparseMatrixAIJ & sm_to_copy = this->getMatrix(matrix_to_copy_id);
SparseMatrix * sm =
new SparseMatrixAIJ(sm_to_copy, sstr.str(), this->memory_id);
this->registerSparseMatrix(matrix_id, *sm);
return *sm;
}
/* -------------------------------------------------------------------------- */
SparseMatrixAIJ & DOFManagerDefault::getMatrix(const ID & matrix_id) {
AIJMatrixMap::iterator it = this->aij_matrices.find(matrix_id);
if (it == this->aij_matrices.end())
AKANTU_EXCEPTION("The matrix " << matrix_id
<< " does not exists in the DOFManager "
<< this->id);
return *(it->second);
}
/* -------------------------------------------------------------------------- */
TimeStepSolver & DOFManagerDefault::getNewTimeStepSolver(
const ID & dof_id, const ID & time_step_solver_id,
const TimeStepSolverType & time_step_solver_type) {
std::stringstream sstr;
sstr << this->id << ":" << time_step_solver_id;
TimeStepSolver * tss = new TimeStepSolverDefault(
*this, dof_id, time_step_solver_type, sstr.str(), this->memory_id);
this->registerTimeStepSolver(time_step_solver_id, *tss);
return *tss;
}
/* -------------------------------------------------------------------------- */
void DOFManagerDefault::getSolutionPerDOFs(const ID & dof_id,
Array<Real> & solution_array) {
AKANTU_DEBUG_IN();
const Array<UInt> & equation_number = this->getLocalEquationNumbers(dof_id);
UInt nb_degree_of_freedoms =
solution_array.getSize() * solution_array.getNbComponent();
AKANTU_DEBUG_ASSERT(
equation_number.getSize() == nb_degree_of_freedoms,
"The array to get the solution does not have a correct size."
<< " (" << solution_array.getID() << ")");
Real * sol_it = solution_array.storage();
UInt * equ_it = equation_number.storage();
Array<Real> solution;
for (UInt d = 0; d < nb_degree_of_freedoms; ++d, ++sol_it, ++equ_it) {
(*sol_it) = solution(*equ_it);
}
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
void
DOFManagerDefault::assembleToResidual(const ID & dof_id,
const Array<Real> & array_to_assemble,
Real scale_factor) {
AKANTU_DEBUG_IN();
const Array<UInt> & equation_number = this->getLocalEquationNumbers(dof_id);
UInt nb_degree_of_freedoms =
array_to_assemble.getSize() * array_to_assemble.getNbComponent();
AKANTU_DEBUG_ASSERT(equation_number.getSize() == nb_degree_of_freedoms,
"The array to assemble does not have a correct size."
<< " (" << array_to_assemble.getID() << ")");
Real * arr_it = array_to_assemble.storage();
UInt * equ_it = equation_number.storage();
for (UInt d = 0; d < nb_degree_of_freedoms; ++d, ++arr_it, ++equ_it) {
residual(*equ_it) += scale_factor * (*arr_it);
}
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
void DOFManagerDefault::assembleElementalMatricesToMatrix(
const ID & matrix_id, const ID & dof_id, const Array<Real> & elementary_mat,
const ElementType & type, const GhostType & ghost_type,
const MatrixType & elemental_matrix_type,
const Array<UInt> & filter_elements) {
AKANTU_DEBUG_IN();
const Array<UInt> & equation_number = this->getLocalEquationNumbers(dof_id);
SparseMatrixAIJ & A = this->getMatrix(matrix_id);
UInt nb_element;
if (ghost_type == _not_ghost) {
nb_element = mesh.getNbElement(type);
} else {
AKANTU_DEBUG_TO_IMPLEMENT();
}
UInt * filter_it = NULL;
if (filter_elements != empty_filter) {
nb_element = filter_elements.getSize();
filter_it = filter_elements.storage();
} else {
nb_element = mesh.getNbElement(type, ghost_type);
}
AKANTU_DEBUG_ASSERT(elementary_mat.getSize() == nb_element,
"The vector elementary_mat("
<< elementary_mat.getID()
<< ") has not the good size.");
UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
UInt nb_degree_of_freedom = elementary_mat.getNbComponent() /
(nb_nodes_per_element * nb_nodes_per_element);
const Array<UInt> connectivity = this->mesh.getConnectivity(type, ghost_type);
Array<UInt>::const_vector_iterator conn_begin =
connectivity.begin(nb_nodes_per_element);
Array<UInt>::const_vector_iterator conn_it = conn_begin;
UInt size_mat = nb_nodes_per_element * nb_degree_of_freedom;
Vector<UInt> local_eq_nb(nb_degree_of_freedom * nb_nodes_per_element);
Array<Real>::const_matrix_iterator el_mat_it =
elementary_mat.begin(size_mat, size_mat);
for (UInt e = 0; e < nb_element; ++e, ++el_mat_it) {
if (filter_it != NULL)
conn_it = conn_begin + *filter_it;
this->extractElementEquationNumber(equation_number, *conn_it,
nb_degree_of_freedom, local_eq_nb);
if (filter_it != NULL)
++filter_it;
else
++conn_it;
if (A.getMatrixType() == _symmetric)
if (elemental_matrix_type == _symmetric)
this->addSymmetricElementalMatrixToSymmetric(A, *el_mat_it, local_eq_nb,
A.getSize());
else
this->addUnsymmetricElementalMatrixToSymmetric(
A, *el_mat_it, local_eq_nb, A.getSize());
else
this->addElementalMatrixToUnsymmetric(A, *el_mat_it, local_eq_nb,
A.getSize());
}
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
__END_AKANTU__

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