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model.cc
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Sun, Aug 4, 11:08
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Tue, Aug 6, 11:08 (2 d)
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rAKA akantu
model.cc
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/**
* @file model.cc
*
* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
* @author David Simon Kammer <david.kammer@epfl.ch>
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date Mon Oct 03 12:24:07 2011
*
* @brief implementation of model common parts
*
* @section LICENSE
*
* Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "model.hh"
#include "element_group.hh"
__BEGIN_AKANTU__
/* -------------------------------------------------------------------------- */
Model
::
Model
(
Mesh
&
m
,
UInt
dim
,
const
ID
&
id
,
const
MemoryID
&
memory_id
)
:
Memory
(
id
,
memory_id
),
mesh
(
m
),
spatial_dimension
(
dim
==
_all_dimensions
?
m
.
getSpatialDimension
()
:
dim
),
synch_registry
(
NULL
),
is_pbc_slave_node
(
0
,
1
,
"is_pbc_slave_node"
)
{
AKANTU_DEBUG_IN
();
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
Model
::
initFull
(
std
::
string
input_file
,
const
ModelOptions
&
options
)
{
AKANTU_DEBUG_IN
();
if
(
input_file
!=
""
)
{
parser
.
parse
(
input_file
);
}
initModel
();
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
Model
::
createSynchronizerRegistry
(
DataAccessor
*
data_accessor
){
synch_registry
=
new
SynchronizerRegistry
(
*
data_accessor
);
}
/* -------------------------------------------------------------------------- */
void
Model
::
setPBC
(
UInt
x
,
UInt
y
,
UInt
z
){
Mesh
&
mesh
=
getFEM
().
getMesh
();
mesh
.
computeBoundingBox
();
if
(
x
)
MeshUtils
::
computePBCMap
(
mesh
,
0
,
pbc_pair
);
if
(
y
)
MeshUtils
::
computePBCMap
(
mesh
,
1
,
pbc_pair
);
if
(
z
)
MeshUtils
::
computePBCMap
(
mesh
,
2
,
pbc_pair
);
}
/* -------------------------------------------------------------------------- */
void
Model
::
setPBC
(
SurfacePairList
&
surface_pairs
,
ElementType
surface_e_type
){
Mesh
&
mesh
=
getFEM
().
getMesh
();
SurfacePairList
::
iterator
s_it
;
for
(
s_it
=
surface_pairs
.
begin
();
s_it
!=
surface_pairs
.
end
();
++
s_it
)
{
MeshUtils
::
computePBCMap
(
mesh
,
*
s_it
,
surface_e_type
,
pbc_pair
);
}
}
/* -------------------------------------------------------------------------- */
void
Model
::
initPBC
()
{
Mesh
&
mesh
=
getFEM
().
getMesh
();
std
::
map
<
UInt
,
UInt
>::
iterator
it
=
pbc_pair
.
begin
();
std
::
map
<
UInt
,
UInt
>::
iterator
end
=
pbc_pair
.
end
();
is_pbc_slave_node
.
resize
(
mesh
.
getNbNodes
());
#ifndef AKANTU_NDEBUG
Real
*
coords
=
mesh
.
getNodes
().
values
;
UInt
dim
=
mesh
.
getSpatialDimension
();
#endif
while
(
it
!=
end
){
UInt
i1
=
(
*
it
).
first
;
is_pbc_slave_node
(
i1
)
=
true
;
#ifndef AKANTU_NDEBUG
UInt
i2
=
(
*
it
).
second
;
AKANTU_DEBUG_INFO
(
"pairing "
<<
i1
<<
" ("
<<
coords
[
dim
*
i1
]
<<
","
<<
coords
[
dim
*
i1
+
1
]
<<
","
<<
coords
[
dim
*
i1
+
2
]
<<
") with "
<<
i2
<<
" ("
<<
coords
[
dim
*
i2
]
<<
","
<<
coords
[
dim
*
i2
+
1
]
<<
","
<<
coords
[
dim
*
i2
+
2
]
<<
")"
);
#endif
++
it
;
}
}
/* -------------------------------------------------------------------------- */
DistributedSynchronizer
&
Model
::
createParallelSynch
(
MeshPartition
*
partition
,
__attribute__
((
unused
))
DataAccessor
*
data_accessor
){
AKANTU_DEBUG_IN
();
/* ------------------------------------------------------------------------ */
/* Parallel initialization */
/* ------------------------------------------------------------------------ */
StaticCommunicator
&
comm
=
StaticCommunicator
::
getStaticCommunicator
();
Int
prank
=
comm
.
whoAmI
();
DistributedSynchronizer
*
synch
=
NULL
;
if
(
prank
==
0
)
synch
=
DistributedSynchronizer
::
createDistributedSynchronizerMesh
(
getFEM
().
getMesh
(),
partition
);
else
synch
=
DistributedSynchronizer
::
createDistributedSynchronizerMesh
(
getFEM
().
getMesh
(),
NULL
);
AKANTU_DEBUG_OUT
();
return
*
synch
;
}
/* -------------------------------------------------------------------------- */
Model
::~
Model
()
{
AKANTU_DEBUG_IN
();
FEMMap
::
iterator
it
;
for
(
it
=
fems
.
begin
();
it
!=
fems
.
end
();
++
it
)
{
if
(
it
->
second
)
delete
it
->
second
;
}
for
(
it
=
fems_boundary
.
begin
();
it
!=
fems_boundary
.
end
();
++
it
)
{
if
(
it
->
second
)
delete
it
->
second
;
}
delete
synch_registry
;
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
Model
::
dumpGroup
(
const
std
::
string
&
group_name
)
{
ElementGroup
&
group
=
mesh
.
getElementGroup
(
group_name
);
group
.
dump
();
}
/* -------------------------------------------------------------------------- */
void
Model
::
dumpGroup
(
const
std
::
string
&
group_name
,
const
std
::
string
&
dumper_name
)
{
ElementGroup
&
group
=
mesh
.
getElementGroup
(
group_name
);
group
.
dump
(
dumper_name
);
}
/* -------------------------------------------------------------------------- */
void
Model
::
dumpGroup
()
{
GroupManager
::
element_group_iterator
bit
=
mesh
.
element_group_begin
();
GroupManager
::
element_group_iterator
bend
=
mesh
.
element_group_end
();
for
(;
bit
!=
bend
;
++
bit
)
{
bit
->
second
->
dump
();
}
}
/* -------------------------------------------------------------------------- */
void
Model
::
setGroupDirectory
(
const
std
::
string
&
directory
)
{
GroupManager
::
element_group_iterator
bit
=
mesh
.
element_group_begin
();
GroupManager
::
element_group_iterator
bend
=
mesh
.
element_group_end
();
for
(;
bit
!=
bend
;
++
bit
)
{
bit
->
second
->
setDirectory
(
directory
);
}
}
/* -------------------------------------------------------------------------- */
void
Model
::
setGroupDirectory
(
const
std
::
string
&
directory
,
const
std
::
string
&
group_name
)
{
ElementGroup
&
group
=
mesh
.
getElementGroup
(
group_name
);
group
.
setDirectory
(
directory
);
}
/* -------------------------------------------------------------------------- */
void
Model
::
setGroupBaseName
(
const
std
::
string
&
basename
,
const
std
::
string
&
group_name
)
{
ElementGroup
&
group
=
mesh
.
getElementGroup
(
group_name
);
group
.
setBaseName
(
basename
);
}
/* -------------------------------------------------------------------------- */
DumperIOHelper
&
Model
::
getGroupDumper
(
const
std
::
string
&
group_name
)
{
ElementGroup
&
group
=
mesh
.
getElementGroup
(
group_name
);
return
group
.
getDumper
();
}
/* -------------------------------------------------------------------------- */
__END_AKANTU__
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