solid_mechanics_model.cc
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Created: Wed, May 1, 05:50

solid_mechanics_model.cc
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	/**
	* @file solid_mechanics_model.cc
	*
	* @author Ramin Aghababaei <ramin.aghababaei@epfl.ch>
	* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
	* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
	* @author David Simon Kammer <david.kammer@epfl.ch>
	* @author Daniel Pino Muñoz <daniel.pinomunoz@epfl.ch>
	* @author Nicolas Richart <nicolas.richart@epfl.ch>
	* @author Clement Roux <clement.roux@epfl.ch>
	* @author Marco Vocialta <marco.vocialta@epfl.ch>
	*
	* @date creation: Tue Jul 27 2010
	* @date last modification: Wed Feb 21 2018
	*
	* @brief Implementation of the SolidMechanicsModel class
	*
	* @section LICENSE
	*
	* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
	* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
	*
	* Akantu is free software: you can redistribute it and/or modify it under the
	* terms of the GNU Lesser General Public License as published by the Free
	* Software Foundation, either version 3 of the License, or (at your option) any
	* later version.
	*
	* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
	* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
	* details.
	*
	* You should have received a copy of the GNU Lesser General Public License
	* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
	*
	*/

	/* -------------------------------------------------------------------------- */
	#include "solid_mechanics_model.hh"
	#include "integrator_gauss.hh"
	#include "shape_lagrange.hh"
	#include "solid_mechanics_model_tmpl.hh"

	#include "communicator.hh"
	#include "element_synchronizer.hh"
	#include "sparse_matrix.hh"
	#include "synchronizer_registry.hh"

	#include "dumpable_inline_impl.hh"
	#ifdef AKANTU_USE_IOHELPER
	#include "dumper_iohelper_paraview.hh"
	#endif

	#include "material_non_local.hh"
	/* -------------------------------------------------------------------------- */

	namespace akantu {

	/* -------------------------------------------------------------------------- */
	/**
	* A solid mechanics model need a mesh and a dimension to be created. the model
	* by it self can not do a lot, the good init functions should be called in
	* order to configure the model depending on what we want to do.
	*
	* @param mesh mesh representing the model we want to simulate
	* @param dim spatial dimension of the problem, if dim = 0 (default value) the
	* dimension of the problem is assumed to be the on of the mesh
	* @param id an id to identify the model
	*/
	SolidMechanicsModel::SolidMechanicsModel(Mesh & mesh, UInt dim, const ID & id,
	const MemoryID & memory_id,
	const ModelType model_type)
	: Model(mesh, model_type, dim, id, memory_id),
	BoundaryCondition<SolidMechanicsModel>(), f_m2a(1.0),
	displacement(nullptr), previous_displacement(nullptr),
	displacement_increment(nullptr), mass(nullptr), velocity(nullptr),
	acceleration(nullptr), external_force(nullptr), internal_force(nullptr),
	blocked_dofs(nullptr), current_position(nullptr),
	material_index("material index", id, memory_id),
	material_local_numbering("material local numbering", id, memory_id),
	increment_flag(false), are_materials_instantiated(false) {
	AKANTU_DEBUG_IN();

	this->registerFEEngineObject<MyFEEngineType>("SolidMechanicsFEEngine", mesh,
	Model::spatial_dimension);

	#if defined(AKANTU_USE_IOHELPER)
	this->mesh.registerDumper<DumperParaview>("paraview_all", id, true);
	this->mesh.addDumpMesh(mesh, Model::spatial_dimension, _not_ghost,
	_ek_regular);
	#endif

	material_selector = std::make_shared<DefaultMaterialSelector>(material_index),

	this->initDOFManager();

	this->registerDataAccessor(*this);

	if (this->mesh.isDistributed()) {
	auto & synchronizer = this->mesh.getElementSynchronizer();
	this->registerSynchronizer(synchronizer, _gst_material_id);
	this->registerSynchronizer(synchronizer, _gst_smm_mass);
	this->registerSynchronizer(synchronizer, _gst_smm_stress);
	this->registerSynchronizer(synchronizer, _gst_for_dump);
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	SolidMechanicsModel::~SolidMechanicsModel() {
	AKANTU_DEBUG_IN();

	for (auto & internal : this->registered_internals) {
	delete internal.second;
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::setTimeStep(Real time_step, const ID & solver_id) {
	Model::setTimeStep(time_step, solver_id);

	#if defined(AKANTU_USE_IOHELPER)
	this->mesh.getDumper().setTimeStep(time_step);
	#endif
	}

	/* -------------------------------------------------------------------------- */
	/* Initialization */
	/* -------------------------------------------------------------------------- */
	/**
	* This function groups many of the initialization in on function. For most of
	* basics case the function should be enough. The functions initialize the
	* model, the internal vectors, set them to 0, and depending on the parameters
	* it also initialize the explicit or implicit solver.
	*
	* @param material_file the file containing the materials to use
	* @param method the analysis method wanted. See the akantu::AnalysisMethod for
	* the different possibilities
	*/
	void SolidMechanicsModel::initFullImpl(const ModelOptions & options) {
	material_index.initialize(mesh, _element_kind = _ek_not_defined,
	_default_value = UInt(-1), _with_nb_element = true);
	material_local_numbering.initialize(mesh, _element_kind = _ek_not_defined,
	_with_nb_element = true);

	Model::initFullImpl(options);

	// initialize the materials
	if (this->parser.getLastParsedFile() != "") {
	this->instantiateMaterials();
	}

	this->initMaterials();

	this->initBC(this, displacement, displacement_increment, external_force);
	}

	/* -------------------------------------------------------------------------- */
	TimeStepSolverType SolidMechanicsModel::getDefaultSolverType() const {
	return _tsst_dynamic_lumped;
	}

	/* -------------------------------------------------------------------------- */
	ModelSolverOptions SolidMechanicsModel::getDefaultSolverOptions(
	const TimeStepSolverType & type) const {
	ModelSolverOptions options;

	switch (type) {
	case _tsst_dynamic_lumped: {
	options.non_linear_solver_type = _nls_lumped;
	options.integration_scheme_type["displacement"] = _ist_central_difference;
	options.solution_type["displacement"] = IntegrationScheme::_acceleration;
	break;
	}
	case _tsst_static: {
	options.non_linear_solver_type = _nls_newton_raphson;
	options.integration_scheme_type["displacement"] = _ist_pseudo_time;
	options.solution_type["displacement"] = IntegrationScheme::_not_defined;
	break;
	}
	case _tsst_dynamic: {
	if (this->method == _explicit_consistent_mass) {
	options.non_linear_solver_type = _nls_newton_raphson;
	options.integration_scheme_type["displacement"] = _ist_central_difference;
	options.solution_type["displacement"] = IntegrationScheme::_acceleration;
	} else {
	options.non_linear_solver_type = _nls_newton_raphson;
	options.integration_scheme_type["displacement"] = _ist_trapezoidal_rule_2;
	options.solution_type["displacement"] = IntegrationScheme::_displacement;
	}
	break;
	}
	default:
	AKANTU_EXCEPTION(type << " is not a valid time step solver type");
	}

	return options;
	}

	/* -------------------------------------------------------------------------- */
	std::tuple<ID, TimeStepSolverType>
	SolidMechanicsModel::getDefaultSolverID(const AnalysisMethod & method) {
	switch (method) {
	case _explicit_lumped_mass: {
	return std::make_tuple("explicit_lumped", _tsst_dynamic_lumped);
	}
	case _explicit_consistent_mass: {
	return std::make_tuple("explicit", _tsst_dynamic);
	}
	case _static: {
	return std::make_tuple("static", _tsst_static);
	}
	case _implicit_dynamic: {
	return std::make_tuple("implicit", _tsst_dynamic);
	}
	default:
	return std::make_tuple("unknown", _tsst_not_defined);
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::initSolver(TimeStepSolverType time_step_solver_type,
	NonLinearSolverType) {
	auto & dof_manager = this->getDOFManager();

	/* ------------------------------------------------------------------------ */
	// for alloc type of solvers
	this->allocNodalField(this->displacement, spatial_dimension, "displacement");
	this->allocNodalField(this->previous_displacement, spatial_dimension,
	"previous_displacement");
	this->allocNodalField(this->displacement_increment, spatial_dimension,
	"displacement_increment");
	this->allocNodalField(this->internal_force, spatial_dimension,
	"internal_force");
	this->allocNodalField(this->external_force, spatial_dimension,
	"external_force");
	this->allocNodalField(this->blocked_dofs, spatial_dimension, "blocked_dofs");
	this->allocNodalField(this->current_position, spatial_dimension,
	"current_position");

	// initialize the current positions
	this->current_position->copy(this->mesh.getNodes());

	/* ------------------------------------------------------------------------ */
	if (!dof_manager.hasDOFs("displacement")) {
	dof_manager.registerDOFs("displacement", *this->displacement, _dst_nodal);
	dof_manager.registerBlockedDOFs("displacement", *this->blocked_dofs);
	dof_manager.registerDOFsIncrement("displacement",
	*this->displacement_increment);
	dof_manager.registerDOFsPrevious("displacement",
	*this->previous_displacement);
	}

	/* ------------------------------------------------------------------------ */
	// for dynamic
	if (time_step_solver_type == _tsst_dynamic \|\|
	time_step_solver_type == _tsst_dynamic_lumped) {
	this->allocNodalField(this->velocity, spatial_dimension, "velocity");
	this->allocNodalField(this->acceleration, spatial_dimension,
	"acceleration");

	if (!dof_manager.hasDOFsDerivatives("displacement", 1)) {
	dof_manager.registerDOFsDerivative("displacement", 1, *this->velocity);
	dof_manager.registerDOFsDerivative("displacement", 2,
	*this->acceleration);
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	/**
	* Initialize the model,basically it pre-compute the shapes, shapes derivatives
	* and jacobian
	*/
	void SolidMechanicsModel::initModel() {
	/// \todo add the current position as a parameter to initShapeFunctions for
	/// large deformation
	getFEEngine().initShapeFunctions(_not_ghost);
	getFEEngine().initShapeFunctions(_ghost);
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::assembleResidual() {
	AKANTU_DEBUG_IN();

	/* ------------------------------------------------------------------------ */
	// computes the internal forces
	this->assembleInternalForces();

	/* ------------------------------------------------------------------------ */
	this->getDOFManager().assembleToResidual("displacement",
	*this->external_force, 1);
	this->getDOFManager().assembleToResidual("displacement",
	*this->internal_force, 1);

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::assembleResidual(const ID & residual_part) {
	AKANTU_DEBUG_IN();

	if ("external" == residual_part) {
	this->getDOFManager().assembleToResidual("displacement",
	*this->external_force, 1);
	AKANTU_DEBUG_OUT();
	return;
	}

	if ("internal" == residual_part) {
	this->getDOFManager().assembleToResidual("displacement",
	*this->internal_force, 1);
	AKANTU_DEBUG_OUT();
	return;
	}

	AKANTU_CUSTOM_EXCEPTION(
	debug::SolverCallbackResidualPartUnknown(residual_part));

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	MatrixType SolidMechanicsModel::getMatrixType(const ID & matrix_id) {
	// \TODO check the materials to know what is the correct answer
	if (matrix_id == "C")
	return _mt_not_defined;

	return _symmetric;
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::assembleMatrix(const ID & matrix_id) {
	if (matrix_id == "K") {
	this->assembleStiffnessMatrix();
	} else if (matrix_id == "M") {
	this->assembleMass();
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::assembleLumpedMatrix(const ID & matrix_id) {
	if (matrix_id == "M") {
	this->assembleMassLumped();
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::beforeSolveStep() {
	for (auto & material : materials)
	material->beforeSolveStep();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::afterSolveStep() {
	for (auto & material : materials)
	material->afterSolveStep();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::predictor() { ++displacement_release; }

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::corrector() { ++displacement_release; }

	/* -------------------------------------------------------------------------- */
	/**
	* This function computes the internal forces as F_{int} = \int_{\Omega} N
	* \sigma d\Omega@f$
	*/
	void SolidMechanicsModel::assembleInternalForces() {
	AKANTU_DEBUG_IN();

	AKANTU_DEBUG_INFO("Assemble the internal forces");

	this->internal_force->clear();

	// compute the stresses of local elements
	AKANTU_DEBUG_INFO("Compute local stresses");
	for (auto & material : materials) {
	material->computeAllStresses(_not_ghost);
	}

	/* ------------------------------------------------------------------------ */
	/* Computation of the non local part */
	if (this->non_local_manager)
	this->non_local_manager->computeAllNonLocalStresses();

	// communicate the stresses
	AKANTU_DEBUG_INFO("Send data for residual assembly");
	this->asynchronousSynchronize(_gst_smm_stress);

	// assemble the forces due to local stresses
	AKANTU_DEBUG_INFO("Assemble residual for local elements");
	for (auto & material : materials) {
	material->assembleInternalForces(_not_ghost);
	}

	// finalize communications
	AKANTU_DEBUG_INFO("Wait distant stresses");
	this->waitEndSynchronize(_gst_smm_stress);

	// assemble the stresses due to ghost elements
	AKANTU_DEBUG_INFO("Assemble residual for ghost elements");
	for (auto & material : materials) {
	material->assembleInternalForces(_ghost);
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::assembleStiffnessMatrix() {
	AKANTU_DEBUG_IN();

	AKANTU_DEBUG_INFO("Assemble the new stiffness matrix.");

	// Check if materials need to recompute the matrix
	bool need_to_reassemble = false;

	for (auto & material : materials) {
	need_to_reassemble \|= material->hasStiffnessMatrixChanged();
	}

	if (need_to_reassemble) {
	this->getDOFManager().getMatrix("K").clear();

	// call compute stiffness matrix on each local elements
	for (auto & material : materials) {
	material->assembleStiffnessMatrix(_not_ghost);
	}
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::updateCurrentPosition() {
	if (this->current_position_release == this->displacement_release)
	return;

	this->current_position->copy(this->mesh.getNodes());

	auto cpos_it = this->current_position->begin(Model::spatial_dimension);
	auto cpos_end = this->current_position->end(Model::spatial_dimension);
	auto disp_it = this->displacement->begin(Model::spatial_dimension);

	for (; cpos_it != cpos_end; ++cpos_it, ++disp_it) {
	cpos_it += disp_it;
	}

	this->current_position_release = this->displacement_release;
	}

	/* -------------------------------------------------------------------------- */
	const Array<Real> & SolidMechanicsModel::getCurrentPosition() {
	this->updateCurrentPosition();
	return *this->current_position;
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::updateDataForNonLocalCriterion(
	ElementTypeMapReal & criterion) {
	const ID field_name = criterion.getName();
	for (auto & material : materials) {
	if (!material->isInternal<Real>(field_name, _ek_regular))
	continue;

	for (auto ghost_type : ghost_types) {
	material->flattenInternal(field_name, criterion, ghost_type, _ek_regular);
	}
	}
	}

	/* -------------------------------------------------------------------------- */
	/* Information */
	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getStableTimeStep() {
	AKANTU_DEBUG_IN();

	Real min_dt = getStableTimeStep(_not_ghost);

	/// reduction min over all processors
	mesh.getCommunicator().allReduce(min_dt, SynchronizerOperation::_min);

	AKANTU_DEBUG_OUT();
	return min_dt;
	}

	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getStableTimeStep(const GhostType & ghost_type) {
	AKANTU_DEBUG_IN();

	Real min_dt = std::numeric_limits<Real>::max();

	this->updateCurrentPosition();

	Element elem;
	elem.ghost_type = ghost_type;

	for (auto type :
	mesh.elementTypes(Model::spatial_dimension, ghost_type, _ek_regular)) {
	elem.type = type;
	UInt nb_nodes_per_element = mesh.getNbNodesPerElement(type);
	UInt nb_element = mesh.getNbElement(type);

	auto mat_indexes = material_index(type, ghost_type).begin();
	auto mat_loc_num = material_local_numbering(type, ghost_type).begin();

	Array<Real> X(0, nb_nodes_per_element * Model::spatial_dimension);
	FEEngine::extractNodalToElementField(mesh, *current_position, X, type,
	_not_ghost);

	auto X_el = X.begin(Model::spatial_dimension, nb_nodes_per_element);

	for (UInt el = 0; el < nb_element;
	++el, ++X_el, ++mat_indexes, ++mat_loc_num) {
	elem.element = *mat_loc_num;
	Real el_h = getFEEngine().getElementInradius(*X_el, type);
	Real el_c = this->materials[*mat_indexes]->getCelerity(elem);
	Real el_dt = el_h / el_c;

	min_dt = std::min(min_dt, el_dt);
	}
	}

	AKANTU_DEBUG_OUT();
	return min_dt;
	}

	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getKineticEnergy() {
	AKANTU_DEBUG_IN();

	Real ekin = 0.;
	UInt nb_nodes = mesh.getNbNodes();

	if (this->getDOFManager().hasLumpedMatrix("M")) {
	auto m_it = this->mass->begin(Model::spatial_dimension);
	auto m_end = this->mass->end(Model::spatial_dimension);
	auto v_it = this->velocity->begin(Model::spatial_dimension);

	for (UInt n = 0; m_it != m_end; ++n, ++m_it, ++v_it) {
	const auto & v = *v_it;
	const auto & m = *m_it;

	Real mv2 = 0.;
	auto is_local_node = mesh.isLocalOrMasterNode(n);
	// bool is_not_pbc_slave_node = !isPBCSlaveNode(n);
	auto count_node = is_local_node; // && is_not_pbc_slave_node;
	if (count_node) {
	for (UInt i = 0; i < Model::spatial_dimension; ++i) {
	if (m(i) > std::numeric_limits<Real>::epsilon())
	mv2 += v(i) * v(i) * m(i);
	}
	}

	ekin += mv2;
	}
	} else if (this->getDOFManager().hasMatrix("M")) {
	Array<Real> Mv(nb_nodes, Model::spatial_dimension);
	this->getDOFManager().getMatrix("M").matVecMul(*this->velocity, Mv);

	auto mv_it = Mv.begin(Model::spatial_dimension);
	auto mv_end = Mv.end(Model::spatial_dimension);
	auto v_it = this->velocity->begin(Model::spatial_dimension);

	for (; mv_it != mv_end; ++mv_it, ++v_it) {
	ekin += v_it->dot(*mv_it);
	}
	} else {
	AKANTU_ERROR("No function called to assemble the mass matrix.");
	}

	mesh.getCommunicator().allReduce(ekin, SynchronizerOperation::_sum);

	AKANTU_DEBUG_OUT();
	return ekin * .5;
	}

	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getKineticEnergy(const ElementType & type,
	UInt index) {
	AKANTU_DEBUG_IN();

	UInt nb_quadrature_points = getFEEngine().getNbIntegrationPoints(type);

	Array<Real> vel_on_quad(nb_quadrature_points, Model::spatial_dimension);
	Array<UInt> filter_element(1, 1, index);

	getFEEngine().interpolateOnIntegrationPoints(*velocity, vel_on_quad,
	Model::spatial_dimension, type,
	_not_ghost, filter_element);

	auto vit = vel_on_quad.begin(Model::spatial_dimension);
	auto vend = vel_on_quad.end(Model::spatial_dimension);

	Vector<Real> rho_v2(nb_quadrature_points);

	Real rho = materials[material_index(type)(index)]->getRho();

	for (UInt q = 0; vit != vend; ++vit, ++q) {
	rho_v2(q) = rho * vit->dot(*vit);
	}

	AKANTU_DEBUG_OUT();

	return .5 * getFEEngine().integrate(rho_v2, type, index);
	}

	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getExternalWork() {
	AKANTU_DEBUG_IN();

	auto ext_force_it = external_force->begin(Model::spatial_dimension);
	auto int_force_it = internal_force->begin(Model::spatial_dimension);
	auto boun_it = blocked_dofs->begin(Model::spatial_dimension);

	decltype(ext_force_it) incr_or_velo_it;
	if (this->method == _static) {
	incr_or_velo_it =
	this->displacement_increment->begin(Model::spatial_dimension);
	} else {
	incr_or_velo_it = this->velocity->begin(Model::spatial_dimension);
	}

	Real work = 0.;

	UInt nb_nodes = this->mesh.getNbNodes();

	for (UInt n = 0; n < nb_nodes;
	++n, ++ext_force_it, ++int_force_it, ++boun_it, ++incr_or_velo_it) {
	const auto & int_force = *int_force_it;
	const auto & ext_force = *ext_force_it;
	const auto & boun = *boun_it;
	const auto & incr_or_velo = *incr_or_velo_it;

	bool is_local_node = this->mesh.isLocalOrMasterNode(n);
	// bool is_not_pbc_slave_node = !this->isPBCSlaveNode(n);
	bool count_node = is_local_node; // && is_not_pbc_slave_node;

	if (count_node) {
	for (UInt i = 0; i < Model::spatial_dimension; ++i) {
	if (boun(i))
	work -= int_force(i) * incr_or_velo(i);
	else
	work += ext_force(i) * incr_or_velo(i);
	}
	}
	}

	mesh.getCommunicator().allReduce(work, SynchronizerOperation::_sum);

	if (this->method != _static)
	work *= this->getTimeStep();

	AKANTU_DEBUG_OUT();
	return work;
	}

	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getEnergy(const std::string & energy_id) {
	AKANTU_DEBUG_IN();

	if (energy_id == "kinetic") {
	return getKineticEnergy();
	} else if (energy_id == "external work") {
	return getExternalWork();
	}

	Real energy = 0.;
	for (auto & material : materials)
	energy += material->getEnergy(energy_id);

	/// reduction sum over all processors
	mesh.getCommunicator().allReduce(energy, SynchronizerOperation::_sum);

	AKANTU_DEBUG_OUT();
	return energy;
	}
	/* -------------------------------------------------------------------------- */
	Real SolidMechanicsModel::getEnergy(const std::string & energy_id,
	const ElementType & type, UInt index) {
	AKANTU_DEBUG_IN();

	if (energy_id == "kinetic") {
	return getKineticEnergy(type, index);
	}

	UInt mat_index = this->material_index(type, _not_ghost)(index);
	UInt mat_loc_num = this->material_local_numbering(type, _not_ghost)(index);
	Real energy =
	this->materials[mat_index]->getEnergy(energy_id, type, mat_loc_num);

	AKANTU_DEBUG_OUT();
	return energy;
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::onElementsAdded(const Array<Element> & element_list,
	const NewElementsEvent & event) {
	AKANTU_DEBUG_IN();

	this->material_index.initialize(mesh, _element_kind = _ek_not_defined,
	_with_nb_element = true,
	_default_value = UInt(-1));
	this->material_local_numbering.initialize(
	mesh, _element_kind = _ek_not_defined, _with_nb_element = true,
	_default_value = UInt(-1));

	ElementTypeMapArray<UInt> filter("new_element_filter", this->getID(),
	this->getMemoryID());

	for (auto & elem : element_list) {
	if (!filter.exists(elem.type, elem.ghost_type))
	filter.alloc(0, 1, elem.type, elem.ghost_type);
	filter(elem.type, elem.ghost_type).push_back(elem.element);
	}

	this->assignMaterialToElements(&filter);

	for (auto & material : materials)
	material->onElementsAdded(element_list, event);

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::onElementsRemoved(
	const Array<Element> & element_list,
	const ElementTypeMapArray<UInt> & new_numbering,
	const RemovedElementsEvent & event) {
	for (auto & material : materials) {
	material->onElementsRemoved(element_list, new_numbering, event);
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::onNodesAdded(const Array<UInt> & nodes_list,
	const NewNodesEvent & event) {
	AKANTU_DEBUG_IN();
	UInt nb_nodes = mesh.getNbNodes();

	if (displacement) {
	displacement->resize(nb_nodes, 0.);
	++displacement_release;
	}
	if (mass)
	mass->resize(nb_nodes, 0.);
	if (velocity)
	velocity->resize(nb_nodes, 0.);
	if (acceleration)
	acceleration->resize(nb_nodes, 0.);
	if (external_force)
	external_force->resize(nb_nodes, 0.);
	if (internal_force)
	internal_force->resize(nb_nodes, 0.);
	if (blocked_dofs)
	blocked_dofs->resize(nb_nodes, 0.);
	if (current_position)
	current_position->resize(nb_nodes, 0.);

	if (previous_displacement)
	previous_displacement->resize(nb_nodes, 0.);
	if (displacement_increment)
	displacement_increment->resize(nb_nodes, 0.);

	for (auto & material : materials) {
	material->onNodesAdded(nodes_list, event);
	}

	need_to_reassemble_lumped_mass = true;
	need_to_reassemble_mass = true;

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::onNodesRemoved(const Array<UInt> & /element_list/,
	const Array<UInt> & new_numbering,
	const RemovedNodesEvent & /event/) {
	if (displacement) {
	mesh.removeNodesFromArray(*displacement, new_numbering);
	++displacement_release;
	}
	if (mass)
	mesh.removeNodesFromArray(*mass, new_numbering);
	if (velocity)
	mesh.removeNodesFromArray(*velocity, new_numbering);
	if (acceleration)
	mesh.removeNodesFromArray(*acceleration, new_numbering);
	if (internal_force)
	mesh.removeNodesFromArray(*internal_force, new_numbering);
	if (external_force)
	mesh.removeNodesFromArray(*external_force, new_numbering);
	if (blocked_dofs)
	mesh.removeNodesFromArray(*blocked_dofs, new_numbering);

	// if (increment_acceleration)
	// mesh.removeNodesFromArray(*increment_acceleration, new_numbering);
	if (displacement_increment)
	mesh.removeNodesFromArray(*displacement_increment, new_numbering);

	if (previous_displacement)
	mesh.removeNodesFromArray(*previous_displacement, new_numbering);
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::printself(std::ostream & stream, int indent) const {
	std::string space;
	for (Int i = 0; i < indent; i++, space += AKANTU_INDENT)
	;

	stream << space << "Solid Mechanics Model [" << std::endl;
	stream << space << " + id : " << id << std::endl;
	stream << space << " + spatial dimension : " << Model::spatial_dimension
	<< std::endl;
	stream << space << " + fem [" << std::endl;
	getFEEngine().printself(stream, indent + 2);
	stream << space << AKANTU_INDENT << "]" << std::endl;
	stream << space << " + nodals information [" << std::endl;
	displacement->printself(stream, indent + 2);
	if (velocity)
	velocity->printself(stream, indent + 2);
	if (acceleration)
	acceleration->printself(stream, indent + 2);
	if (mass)
	mass->printself(stream, indent + 2);
	external_force->printself(stream, indent + 2);
	internal_force->printself(stream, indent + 2);
	blocked_dofs->printself(stream, indent + 2);
	stream << space << AKANTU_INDENT << "]" << std::endl;

	stream << space << " + material information [" << std::endl;
	material_index.printself(stream, indent + 2);
	stream << space << AKANTU_INDENT << "]" << std::endl;

	stream << space << " + materials [" << std::endl;
	for (auto & material : materials) {
	material->printself(stream, indent + 1);
	}
	stream << space << AKANTU_INDENT << "]" << std::endl;

	stream << space << "]" << std::endl;
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::initializeNonLocal() {
	this->non_local_manager->synchronize(*this, _gst_material_id);
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::insertIntegrationPointsInNeighborhoods(
	const GhostType & ghost_type) {
	for (auto & mat : materials) {
	MaterialNonLocalInterface * mat_non_local;
	if ((mat_non_local =
	dynamic_cast<MaterialNonLocalInterface *>(mat.get())) == nullptr)
	continue;

	ElementTypeMapArray<Real> quadrature_points_coordinates(
	"quadrature_points_coordinates_tmp_nl", this->id, this->memory_id);
	quadrature_points_coordinates.initialize(this->getFEEngine(),
	_nb_component = spatial_dimension,
	_ghost_type = ghost_type);

	for (auto & type : quadrature_points_coordinates.elementTypes(
	Model::spatial_dimension, ghost_type)) {
	this->getFEEngine().computeIntegrationPointsCoordinates(
	quadrature_points_coordinates(type, ghost_type), type, ghost_type);
	}

	mat_non_local->initMaterialNonLocal();

	mat_non_local->insertIntegrationPointsInNeighborhoods(
	ghost_type, quadrature_points_coordinates);
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::computeNonLocalStresses(
	const GhostType & ghost_type) {
	for (auto & mat : materials) {
	if (dynamic_cast<MaterialNonLocalInterface *>(mat.get()) == nullptr)
	continue;

	auto & mat_non_local = dynamic_cast<MaterialNonLocalInterface &>(*mat);
	mat_non_local.computeNonLocalStresses(ghost_type);
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::updateLocalInternal(
	ElementTypeMapReal & internal_flat, const GhostType & ghost_type,
	const ElementKind & kind) {
	const ID field_name = internal_flat.getName();
	for (auto & material : materials) {
	if (material->isInternal<Real>(field_name, kind))
	material->flattenInternal(field_name, internal_flat, ghost_type, kind);
	}
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::updateNonLocalInternal(
	ElementTypeMapReal & internal_flat, const GhostType & ghost_type,
	const ElementKind & kind) {

	const ID field_name = internal_flat.getName();

	for (auto & mat : materials) {
	if (dynamic_cast<MaterialNonLocalInterface *>(mat.get()) == nullptr)
	continue;

	auto & mat_non_local = dynamic_cast<MaterialNonLocalInterface &>(*mat);
	mat_non_local.updateNonLocalInternals(internal_flat, field_name, ghost_type,
	kind);
	}
	}

	/* -------------------------------------------------------------------------- */
	FEEngine & SolidMechanicsModel::getFEEngineBoundary(const ID & name) {
	return dynamic_cast<FEEngine &>(
	getFEEngineClassBoundary<MyFEEngineType>(name));
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::splitElementByMaterial(
	const Array<Element> & elements,
	std::vector<Array<Element>> & elements_per_mat) const {
	for (const auto & el : elements) {
	Element mat_el = el;
	mat_el.element = this->material_local_numbering(el);
	elements_per_mat[this->material_index(el)].push_back(mat_el);
	}
	}

	/* -------------------------------------------------------------------------- */
	UInt SolidMechanicsModel::getNbData(const Array<Element> & elements,
	const SynchronizationTag & tag) const {
	AKANTU_DEBUG_IN();

	UInt size = 0;
	UInt nb_nodes_per_element = 0;

	for (const Element & el : elements) {
	nb_nodes_per_element += Mesh::getNbNodesPerElement(el.type);
	}

	switch (tag) {
	case _gst_material_id: {
	size += elements.size() * sizeof(UInt);
	break;
	}
	case _gst_smm_mass: {
	size += nb_nodes_per_element * sizeof(Real) *
	Model::spatial_dimension; // mass vector
	break;
	}
	case _gst_smm_for_gradu: {
	size += nb_nodes_per_element * Model::spatial_dimension *
	sizeof(Real); // displacement
	break;
	}
	case _gst_smm_boundary: {
	// force, displacement, boundary
	size += nb_nodes_per_element * Model::spatial_dimension *
	(2 * sizeof(Real) + sizeof(bool));
	break;
	}
	case _gst_for_dump: {
	// displacement, velocity, acceleration, residual, force
	size += nb_nodes_per_element * Model::spatial_dimension * sizeof(Real) * 5;
	break;
	}
	default: {}
	}

	if (tag != _gst_material_id) {
	splitByMaterial(elements, [&](auto && mat, auto && elements) {
	size += mat.getNbData(elements, tag);
	});
	}

	AKANTU_DEBUG_OUT();
	return size;
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::packData(CommunicationBuffer & buffer,
	const Array<Element> & elements,
	const SynchronizationTag & tag) const {
	AKANTU_DEBUG_IN();

	switch (tag) {
	case _gst_material_id: {
	this->packElementalDataHelper(material_index, buffer, elements, false,
	getFEEngine());
	break;
	}
	case _gst_smm_mass: {
	packNodalDataHelper(*mass, buffer, elements, mesh);
	break;
	}
	case _gst_smm_for_gradu: {
	packNodalDataHelper(*displacement, buffer, elements, mesh);
	break;
	}
	case _gst_for_dump: {
	packNodalDataHelper(*displacement, buffer, elements, mesh);
	packNodalDataHelper(*velocity, buffer, elements, mesh);
	packNodalDataHelper(*acceleration, buffer, elements, mesh);
	packNodalDataHelper(*internal_force, buffer, elements, mesh);
	packNodalDataHelper(*external_force, buffer, elements, mesh);
	break;
	}
	case _gst_smm_boundary: {
	packNodalDataHelper(*external_force, buffer, elements, mesh);
	packNodalDataHelper(*velocity, buffer, elements, mesh);
	packNodalDataHelper(*blocked_dofs, buffer, elements, mesh);
	break;
	}
	default: {}
	}

	if (tag != _gst_material_id) {
	splitByMaterial(elements, [&](auto && mat, auto && elements) {
	mat.packData(buffer, elements, tag);
	});
	}
	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::unpackData(CommunicationBuffer & buffer,
	const Array<Element> & elements,
	const SynchronizationTag & tag) {
	AKANTU_DEBUG_IN();

	switch (tag) {
	case _gst_material_id: {
	for (auto && element : elements) {
	UInt recv_mat_index;
	buffer >> recv_mat_index;
	UInt & mat_index = material_index(element);
	if (mat_index != UInt(-1))
	continue;

	// add ghosts element to the correct material
	mat_index = recv_mat_index;
	UInt index = materials[mat_index]->addElement(element);
	material_local_numbering(element) = index;
	}
	break;
	}
	case _gst_smm_mass: {
	unpackNodalDataHelper(*mass, buffer, elements, mesh);
	break;
	}
	case _gst_smm_for_gradu: {
	unpackNodalDataHelper(*displacement, buffer, elements, mesh);
	break;
	}
	case _gst_for_dump: {
	unpackNodalDataHelper(*displacement, buffer, elements, mesh);
	unpackNodalDataHelper(*velocity, buffer, elements, mesh);
	unpackNodalDataHelper(*acceleration, buffer, elements, mesh);
	unpackNodalDataHelper(*internal_force, buffer, elements, mesh);
	unpackNodalDataHelper(*external_force, buffer, elements, mesh);
	break;
	}
	case _gst_smm_boundary: {
	unpackNodalDataHelper(*external_force, buffer, elements, mesh);
	unpackNodalDataHelper(*velocity, buffer, elements, mesh);
	unpackNodalDataHelper(*blocked_dofs, buffer, elements, mesh);
	break;
	}
	default: {}
	}

	if (tag != _gst_material_id) {
	splitByMaterial(elements, [&](auto && mat, auto && elements) {
	mat.unpackData(buffer, elements, tag);
	});
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	UInt SolidMechanicsModel::getNbData(const Array<UInt> & dofs,
	const SynchronizationTag & tag) const {
	AKANTU_DEBUG_IN();

	UInt size = 0;
	// UInt nb_nodes = mesh.getNbNodes();

	switch (tag) {
	case _gst_smm_uv: {
	size += sizeof(Real) * Model::spatial_dimension * 2;
	break;
	}
	case _gst_smm_res: {
	size += sizeof(Real) * Model::spatial_dimension;
	break;
	}
	case _gst_smm_mass: {
	size += sizeof(Real) * Model::spatial_dimension;
	break;
	}
	case _gst_for_dump: {
	size += sizeof(Real) * Model::spatial_dimension * 5;
	break;
	}
	default: { AKANTU_ERROR("Unknown ghost synchronization tag : " << tag); }
	}

	AKANTU_DEBUG_OUT();
	return size * dofs.size();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::packData(CommunicationBuffer & buffer,
	const Array<UInt> & dofs,
	const SynchronizationTag & tag) const {
	AKANTU_DEBUG_IN();

	switch (tag) {
	case _gst_smm_uv: {
	packDOFDataHelper(*displacement, buffer, dofs);
	packDOFDataHelper(*velocity, buffer, dofs);
	break;
	}
	case _gst_smm_res: {
	packDOFDataHelper(*internal_force, buffer, dofs);
	break;
	}
	case _gst_smm_mass: {
	packDOFDataHelper(*mass, buffer, dofs);
	break;
	}
	case _gst_for_dump: {
	packDOFDataHelper(*displacement, buffer, dofs);
	packDOFDataHelper(*velocity, buffer, dofs);
	packDOFDataHelper(*acceleration, buffer, dofs);
	packDOFDataHelper(*internal_force, buffer, dofs);
	packDOFDataHelper(*external_force, buffer, dofs);
	break;
	}
	default: { AKANTU_ERROR("Unknown ghost synchronization tag : " << tag); }
	}

	AKANTU_DEBUG_OUT();
	}

	/* -------------------------------------------------------------------------- */
	void SolidMechanicsModel::unpackData(CommunicationBuffer & buffer,
	const Array<UInt> & dofs,
	const SynchronizationTag & tag) {
	AKANTU_DEBUG_IN();

	switch (tag) {
	case _gst_smm_uv: {
	unpackDOFDataHelper(*displacement, buffer, dofs);
	unpackDOFDataHelper(*velocity, buffer, dofs);
	break;
	}
	case _gst_smm_res: {
	unpackDOFDataHelper(*internal_force, buffer, dofs);
	break;
	}
	case _gst_smm_mass: {
	unpackDOFDataHelper(*mass, buffer, dofs);
	break;
	}
	case _gst_for_dump: {
	unpackDOFDataHelper(*displacement, buffer, dofs);
	unpackDOFDataHelper(*velocity, buffer, dofs);
	unpackDOFDataHelper(*acceleration, buffer, dofs);
	unpackDOFDataHelper(*internal_force, buffer, dofs);
	unpackDOFDataHelper(*external_force, buffer, dofs);
	break;
	}
	default: { AKANTU_ERROR("Unknown ghost synchronization tag : " << tag); }
	}

	AKANTU_DEBUG_OUT();
	}

	} // namespace akantu

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