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petsc_matrix.hh
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/**
* @file petsc_matrix.hh
* @author Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @date Mon Jul 21 14:49:49 2014
*
* @brief Interface for PETSc matrices
*
* @section LICENSE
*
* Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#ifndef __AKANTU_PETSC_MATRIX_HH__
#define __AKANTU_PETSC_MATRIX_HH__
/* -------------------------------------------------------------------------- */
#include "sparse_matrix.hh"
/* -------------------------------------------------------------------------- */
__BEGIN_AKANTU__
class PETScWrapper;
class PETScMatrix : public SparseMatrix {
/* ------------------------------------------------------------------------ */
/* Constructors/Destructors */
/* ------------------------------------------------------------------------ */
public:
PETScMatrix(UInt size,
const SparseMatrixType & sparse_matrix_type,
const ID & id = "petsc_matrix",
const MemoryID & memory_id = 0);
PETScMatrix(const SparseMatrix & matrix,
const ID & id = "petsc_matrix",
const MemoryID & memory_id = 0);
virtual ~PETScMatrix();
private:
/// init internal PETSc matrix
void init();
/* ------------------------------------------------------------------------ */
/* Methods */
/* ------------------------------------------------------------------------ */
public:
/// resize PETSc matrix
void resize(const DOFSynchronizer & dof_synchronizer);
// /// remove the existing profile
// inline void clearProfile();
// /// add a non-zero element
// virtual UInt addToProfile(UInt i, UInt j);
// /// set the matrix to 0
// inline void clear();
// /// assemble a local matrix in the sparse one
// inline void addToMatrix(UInt i, UInt j, Real value);
/// fill the profil of the matrix
virtual void buildProfile(const Mesh & mesh, const DOFSynchronizer & dof_synchronizer, UInt nb_degree_of_freedom);
// /// modify the matrix to "remove" the blocked dof
// virtual void applyBoundary(const Array<bool> & boundary, Real block_val = 1.);
/// modify the matrix to "remove" the blocked dof
virtual void applyBoundaryNormal(Array<bool> & boundary_normal, Array<Real> & EulerAngles, Array<Real> & rhs, const Array<Real> & matrix, Array<Real> & rhs_rotated) {
AKANTU_DEBUG_TO_IMPLEMENT();
}
/// modify the matrix to "remove" the blocked dof
virtual void removeBoundary(const Array<bool> & boundary) {
AKANTU_DEBUG_TO_IMPLEMENT();
}
/// perform assembly so that matrix is ready for use
void performAssembly();
// /// restore the profile that was before removing the boundaries
// virtual void restoreProfile();
// /// save the profil in a file using the MatrixMarket file format
// virtual void saveProfile(const std::string & filename) const;
/// save the matrix in a file using the MatrixMarket file format
virtual void saveMatrix(const std::string & filename) const;
// /// copy assuming the profile are the same
// virtual void copyContent(const SparseMatrix & matrix);
// /// copy profile
// // void copyProfile(const SparseMatrix & matrix);
/// add matrix assuming the profile are the same
virtual void add(const SparseMatrix & matrix, Real alpha);
// /// diagonal lumping
// virtual void lump(Array<Real> & lumped);
// /// function to print the contain of the class
// //virtual void printself(std::ostream & stream, int indent = 0) const;
private:
/// create a mapping from the global akantu numbering to the PETSc numbering
void createGlobalAkantuToPETScMap(Int* local_master_eq_nbs_ptr);
/// create a mapping from the local akantu numbering to the PETSc numbering
void createLocalAkantuToPETScMap(const DOFSynchronizer & dof_synchronizer);
/* ------------------------------------------------------------------------ */
/* Accessors */
/* ------------------------------------------------------------------------ */
public:
/* ------------------------------------------------------------------------ */
/* Class Members */
/* ------------------------------------------------------------------------ */
private:
/// store the PETSc structures
PETScWrapper * petsc_wrapper;
/// size of the diagonal part of the matrix partition
Int local_size;
/// number of nonzeros in every row of the diagonal part
Array<Int> d_nnz;
/// number of nonzeros in every row of the off-diagonal part
Array<Int> o_nnz;
};
__END_AKANTU__
#endif /* __AKANTU_PETSCI_MATRIX_HH__ */

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