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test_data_distribution.cc
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rAKA akantu
test_data_distribution.cc
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/**
* @file test_data_distribution.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Fri Sep 05 2014
* @date last modification: Sun Oct 19 2014
*
* @brief Test the mesh distribution on creation of a distributed synchonizer
*
* @section LICENSE
*
* Copyright (©) 2014, 2015 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "aka_common.hh"
#include "distributed_synchronizer.hh"
#include "mesh_partition_mesh_data.hh"
#include "element_group.hh"
/* -------------------------------------------------------------------------- */
using namespace akantu;
int main(int argc, char *argv[]) {
initialize(argc, argv);
const UInt spatial_dimension = 3;
Mesh mesh_group_after (spatial_dimension, "after");
Mesh mesh_group_before(spatial_dimension, "before");
StaticCommunicator & comm = StaticCommunicator::getStaticCommunicator();
Int psize = comm.getNbProc();
Int prank = comm.whoAmI();
DistributedSynchronizer *communicator_a, *communicator_b;
if(prank == 0) {
mesh_group_before.read("data_split.msh");
mesh_group_after .read("data_split.msh");
mesh_group_before.createGroupsFromMeshData<std::string>("physical_names");
mesh_group_before.registerData<UInt>("global_id");
mesh_group_after. registerData<UInt>("global_id");
for (Mesh::type_iterator tit = mesh_group_after.firstType(_all_dimensions); tit != mesh_group_after.lastType(_all_dimensions); ++tit) {
Array<UInt> & gidb = *(mesh_group_before.getDataPointer<UInt>("global_id", *tit));
Array<UInt> & gida = *(mesh_group_after .getDataPointer<UInt>("global_id", *tit));
Array<UInt>::scalar_iterator ait = gida.begin();
Array<UInt>::scalar_iterator bit = gidb.begin();
Array<UInt>::scalar_iterator end = gida.end();
for (UInt i = 0; ait != end; ++ait, ++i, ++bit) {
*bit = i;
*ait = i;
}
}
MeshPartitionScotch * partition = new MeshPartitionScotch(mesh_group_after, spatial_dimension);
partition->partitionate(psize);
communicator_a = DistributedSynchronizer::createDistributedSynchronizerMesh(mesh_group_after , partition);
communicator_b = DistributedSynchronizer::createDistributedSynchronizerMesh(mesh_group_before, partition);
delete partition;
} else {
communicator_a = DistributedSynchronizer::createDistributedSynchronizerMesh(mesh_group_after , NULL);
communicator_b = DistributedSynchronizer::createDistributedSynchronizerMesh(mesh_group_before, NULL);
}
mesh_group_after.createGroupsFromMeshData<std::string>("physical_names");
if(prank == 0) std::cout << mesh_group_after;
GroupManager::element_group_iterator grp_ait = mesh_group_after.element_group_begin();
GroupManager::element_group_iterator grp_end = mesh_group_after.element_group_end();
for (; grp_ait != grp_end; ++grp_ait) {
std::string grp = grp_ait->first;
const ElementGroup & bgrp = mesh_group_before.getElementGroup(grp);
const ElementGroup & agrp = *grp_ait->second;
for (ghost_type_t::iterator git = ghost_type_t::begin(); git != ghost_type_t::end(); ++git) {
GhostType ghost_type = *git;
for (Mesh::type_iterator tit = bgrp.firstType(_all_dimensions, ghost_type);
tit != bgrp.lastType(_all_dimensions, ghost_type); ++tit) {
Array<UInt> & gidb = *(mesh_group_before.getDataPointer<UInt>("global_id", *tit, ghost_type));
Array<UInt> & gida = *(mesh_group_after .getDataPointer<UInt>("global_id", *tit, ghost_type));
Array<UInt> bgelem(bgrp.getElements(*tit, ghost_type));
Array<UInt> agelem(agrp.getElements(*tit, ghost_type));
Array<UInt>::scalar_iterator ait = agelem.begin();
Array<UInt>::scalar_iterator bit = bgelem.begin();
Array<UInt>::scalar_iterator end = agelem.end();
for (; ait != end; ++ait, ++bit) {
*bit = gidb(*bit);
*ait = gida(*ait);
}
std::sort(bgelem.begin(), bgelem.end());
std::sort(agelem.begin(), agelem.end());
if(!std::equal(bgelem.begin(), bgelem.end(), agelem.begin())) {
std::cerr << "The filters array for the group " << grp <<
" and for the element type " << *tit << ", " << ghost_type <<
" do not match" <<std::endl;
debug::setDebugLevel(dblTest);
std::cerr << bgelem << std::endl;
std::cerr << agelem << std::endl;
debug::debugger.exit(EXIT_FAILURE);
}
}
}
}
GroupManager::node_group_iterator ngrp_ait = mesh_group_after.node_group_begin();
GroupManager::node_group_iterator ngrp_end = mesh_group_after.node_group_end();
for (; ngrp_ait != ngrp_end; ++ngrp_ait) {
std::string grp = ngrp_ait->first;
const NodeGroup & bgrp = mesh_group_before.getNodeGroup(grp);
const NodeGroup & agrp = *ngrp_ait->second;
const Array<UInt> & gidb = mesh_group_before.getGlobalNodesIds();
const Array<UInt> & gida = mesh_group_after.getGlobalNodesIds();
Array<UInt> bgnode(0, 1);
Array<UInt> agnode(0, 1);
Array<UInt>::const_scalar_iterator ait = agrp.begin();
Array<UInt>::const_scalar_iterator bit = bgrp.begin();
Array<UInt>::const_scalar_iterator end = agrp.end();
for (; ait != end; ++ait, ++bit) {
if(psize > 1) {
if(mesh_group_before.isLocalOrMasterNode(*bit))
bgnode.push_back(gidb(*bit));
if(mesh_group_after.isLocalOrMasterNode(*ait))
agnode.push_back(gida(*ait));
}
}
std::sort(bgnode.begin(), bgnode.end());
std::sort(agnode.begin(), agnode.end());
if(!std::equal(bgnode.begin(), bgnode.end(), agnode.begin())) {
std::cerr << "The filters array for the group " << grp <<
" do not match" <<std::endl;
debug::setDebugLevel(dblTest);
std::cerr << bgnode << std::endl;
std::cerr << agnode << std::endl;
debug::debugger.exit(EXIT_FAILURE);
}
}
mesh_group_after.getElementGroup("inside").setBaseName("after_inside");
mesh_group_after.getElementGroup("inside").dump();
mesh_group_after.getElementGroup("outside").setBaseName("after_outside");
mesh_group_after.getElementGroup("outside").dump();
mesh_group_after.getElementGroup("volume").setBaseName("after_volume");
mesh_group_after.getElementGroup("volume").dump();
mesh_group_before.getElementGroup("inside").setBaseName("before_inside");
mesh_group_before.getElementGroup("inside").dump();
mesh_group_before.getElementGroup("outside").setBaseName("before_outside");
mesh_group_before.getElementGroup("outside").dump();
mesh_group_before.getElementGroup("volume").setBaseName("before_volume");
mesh_group_before.getElementGroup("volume").dump();
delete communicator_a;
delete communicator_b;
finalize();
return EXIT_SUCCESS;
}
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