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rAKA/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
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test_ASR_damage.cc
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/**
* @file test_ASR_damage.cc
*
* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
*
*
* @brief test the solidmechancis model for IGFEM analysis
*
* @section LICENSE
*
* Copyright (©) 2010-2012, 2014 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
*/
/* -------------------------------------------------------------------------- */
#include "solid_mechanics_model_igfem.hh"
#include "aka_common.hh"
// #include "mesh_segment_intersector.hh"
// #include "mesh_sphere_intersector.hh"
// #include "geom_helper_functions.hh"
// #include "mesh_geom_common.hh"
/* -------------------------------------------------------------------------- */
#include <cstdlib>
#include <fstream>
#include <iostream>
#include <cmath>
#include <math.h>
#include "dumper_paraview.hh"
#include "mesh_geom_common.hh"
#include "material_damage_iterative.hh"
#include "material_igfem_saw_tooth_damage.hh"
//#include "dumpable_inline_impl.hh"
/* -------------------------------------------------------------------------- */
using namespace akantu;
class Sphere {
public:
Sphere(const Vector<Real> & center, Real radius, Real tolerance = 0.) : center(center), radius(radius), tolerance(tolerance) {
}
bool isInside(const Vector<Real> & point) const {
return (point.distance(center) < radius + tolerance);
}
const Vector<Real> & getCenter() const { return center; }
Real & getRadius() { return radius; }
protected:
Vector<Real> center;
Real radius, tolerance;
};
void growGel(std::list<SK::Sphere_3> & query_list, Real new_radius) {
std::list<SK::Sphere_3>::const_iterator query_it = query_list.begin(),
query_end = query_list.end();
std::list<SK::Sphere_3> sphere_list;
for (; query_it != query_end ; ++query_it) {
SK::Sphere_3 sphere(query_it->center(),
new_radius * new_radius);
sphere_list.push_back(sphere);
}
query_list.clear();
query_list = sphere_list;
}
void applyBoundaryConditions(SolidMechanicsModelIGFEM & model) {
/// boundary conditions
Mesh & mesh = model.getMesh();
mesh.computeBoundingBox();
const Vector<Real> & lowerBounds = mesh.getLowerBounds();
const Vector<Real> & upperBounds = mesh.getUpperBounds();
Real bottom = lowerBounds(1);
Real top = upperBounds(1);
Real left = lowerBounds(0);
// Real right = upperBounds(0);
Real eps = std::abs((top - bottom) * 1e-12);
const Array<Real> & pos = mesh.getNodes();
Array<Real> & disp = model.getDisplacement();
Array<bool> & boun = model.getBlockedDOFs();
disp.clear();
boun.clear();
/// free expansion
for (UInt i = 0; i < mesh.getNbNodes(); ++i) {
if(std::abs(pos(i,1) - bottom) < eps){
boun(i,1) = true;
disp(i,1) = 0.0;
}
if(std::abs(pos(i,0) - left) < eps){
boun(i,0) = true;
disp(i,0) = 0.0;
}
}
}
void applyEigenstrain(SolidMechanicsModelIGFEM & model) {
/// apply eigenstrain
/// igfem elements
GhostType ghost_type = _not_ghost;
ElementType element_type = _igfem_triangle_5;
Array<Real> & eigenstrain = const_cast<Array<Real> &>(model.getMaterial("igfem_damage").getInternal<Real>("eigen_grad_u")(element_type, ghost_type));
const Array<UInt> & is_inside = model.getMaterial("igfem_damage").getInternal<UInt>("sub_material")(element_type, ghost_type);
Vector<Real> prestrain(4);
prestrain.clear();
prestrain(0) = 0.07;
prestrain(3) = 0.07;
Array<Real>::vector_iterator eig_it = eigenstrain.begin(4);
Array<UInt>::const_scalar_iterator sub_mat_it = is_inside.begin();
Array<Real>::vector_iterator eig_end = eigenstrain.end(4);
for(; eig_it != eig_end; ++eig_it, ++sub_mat_it) {
if((*sub_mat_it) == 0)
*eig_it = prestrain;
}
/// regular elements
element_type = _triangle_3;
Array<Real> & eigenstrain_reg = const_cast<Array<Real> &>(model.getMaterial("gel").getInternal<Real>("eigen_grad_u")(element_type, ghost_type));
eig_it = eigenstrain_reg.begin(4);
eig_end = eigenstrain_reg.end(4);
for(; eig_it != eig_end; ++eig_it, ++sub_mat_it) {
*eig_it = prestrain;
}
}
class SphereMaterialSelector : public DefaultMaterialIGFEMSelector {
public:
SphereMaterialSelector(Real radius, Vector<Real> & center, SolidMechanicsModelIGFEM & model, Real aggregate_radius, Real tolerance = 1.e-12) :
DefaultMaterialIGFEMSelector(model),
model(model),
aggregate(center, aggregate_radius, tolerance) {
gel_pockets.push_back(Sphere(center, radius, tolerance));
}
UInt operator()(const Element & elem) {
if(Mesh::getKind(elem.type) == _ek_igfem)
return 3;
// return 2;//2model.getMaterialIndex(2);
const Mesh & mesh = model.getMesh();
UInt spatial_dimension = model.getSpatialDimension();
Vector<Real> barycenter(spatial_dimension);
mesh.getBarycenter(elem, barycenter);
std::vector<Sphere>::const_iterator iit = gel_pockets.begin();
std::vector<Sphere>::const_iterator eit = gel_pockets.end();
for (; iit != eit; ++iit) {
const Sphere & sp = *iit;
if(sp.isInside(barycenter)) {
return 2; //elastic gel material
//return 0; /// aggregate
}
}
if (aggregate.isInside(barycenter))
return 0;
///return 2;
return 1;
}
void update(Real new_radius) {
std::vector<Sphere>::iterator iit = gel_pockets.begin();
std::vector<Sphere>::iterator eit = gel_pockets.end();
for (; iit != eit; ++iit) {
Real & radius = iit->getRadius();
radius = new_radius;
}
}
protected:
SolidMechanicsModelIGFEM & model;
std::vector<Sphere> gel_pockets;
Sphere aggregate;
};
typedef Spherical SK;
int main(int argc, char *argv[]) {
initialize("material_ASR.dat", argc, argv);
// /// problem dimension
// const UInt spatial_dimension = 2;
// /// mesh creation
// Mesh mesh(spatial_dimension);
// mesh.read(std::string(argv[1]));
// Math::setTolerance(1e-14);
// Real aggregate_radius = 0.016;
// /// geometry of inclusion
// Real radius_inclusion = 0.0002;///0.0158;//0.0002;
// // Spherical kernel testing the addition of nodes
// SK::Sphere_3 sphere(SK::Point_3(0, 0, 0), radius_inclusion * radius_inclusion);
// std::list<SK::Sphere_3> sphere_list;
// sphere_list.push_back(sphere);
// ID domain_name = "gel";
// /// model creation
// SolidMechanicsModelIGFEM model(mesh);
// SphereMaterialSelector * mat_selector;
// Vector<Real> c_sphere(spatial_dimension);
// c_sphere.clear();
// mat_selector = new SphereMaterialSelector(0., c_sphere, model, aggregate_radius);
// model.setMaterialSelector(*mat_selector);
// model.initFull();
// /// register the sphere list in the model
// /// add fields that should be dumped
// model.setBaseName("regular_elements");
// model.addDumpField("material_index");
// model.addDumpFieldVector("displacement");
// model.addDumpField("blocked_dofs");
// model.addDumpField("stress");
// model.addDumpField("damage");
// model.addDumpField("Sc");
// model.addDumpField("eigen_grad_u");
// // model.dump();
// model.registerGeometryObject(sphere_list, domain_name);
// mat_selector->update(radius_inclusion);
// model.update(domain_name);
// applyBoundaryConditions(model);
// applyEigenstrain(model);
// model.setBaseNameToDumper("igfem elements", "igfem elements");
// model.addDumpFieldToDumper("igfem elements", "lambda");
// model.addDumpFieldVectorToDumper("igfem elements", "real_displacement");
// model.addDumpFieldVectorToDumper("igfem elements", "displacement");
// model.addDumpFieldToDumper("igfem elements", "material_index");
// model.addDumpFieldToDumper("igfem elements", "stress");
// model.addDumpFieldToDumper("igfem elements", "Sc");
// model.addDumpFieldToDumper("igfem elements", "damage");
// model.addDumpFieldToDumper("igfem elements", "eigen_grad_u");
// /// Instantiate objects of class MyDamageso
// MaterialDamageIterative<spatial_dimension> & mat_paste = dynamic_cast<MaterialDamageIterative<spatial_dimension> & >(model.getMaterial(1));
// MaterialDamageIterative<spatial_dimension> & mat_aggregate = dynamic_cast<MaterialDamageIterative<spatial_dimension> & >(model.getMaterial(0));
// MaterialIGFEMSawToothDamage<spatial_dimension> & mat_igfem = dynamic_cast<MaterialIGFEMSawToothDamage<spatial_dimension> & >(model.getMaterial(3));
// bool factorize = false;
// bool converged = false;
// Real error;
// UInt nb_damaged_elements = 0;
// Real max_eq_stress_aggregate = 0;
// Real max_eq_stress_paste = 0;
// Real max_igfem = 0;
// do {
// converged = model.solveStep<_scm_newton_raphson_tangent, _scc_increment>(1e-4, error, 2, factorize);
// /// compute damage
// max_eq_stress_aggregate = mat_aggregate.getNormMaxEquivalentStress();
// max_eq_stress_paste = mat_paste.getNormMaxEquivalentStress();
// max_igfem = mat_igfem.getNormMaxEquivalentStress();
// if (max_eq_stress_aggregate > max_eq_stress_paste)
// if (max_eq_stress_aggregate > max_igfem)
// nb_damaged_elements = mat_aggregate.updateDamage();
// else
// nb_damaged_elements = mat_igfem.updateDamage();
// else
// if (max_eq_stress_paste > max_igfem)
// nb_damaged_elements = mat_paste.updateDamage();
// else
// nb_damaged_elements = mat_igfem.updateDamage();
// } while (nb_damaged_elements);
// model.dump();
// model.dump("igfem elements");
// /// grow the gel i = 12
// for (UInt i = 1; i < 12; ++i) {
// // Real new_radius = radius_inclusion - i * 0.00015;
// Real new_radius = radius_inclusion + i * 0.00015;
// growGel(sphere_list, new_radius);
// mat_selector->update(new_radius);
// model.update(domain_name);
// applyBoundaryConditions(model);
// applyEigenstrain(model);
// factorize = false;
// converged = false;
// nb_damaged_elements = 0;
// do {
// converged = model.solveStep<_scm_newton_raphson_tangent, _scc_increment>(1e-4, error, 2, factorize);
// /// compute damage
// max_eq_stress_aggregate = mat_aggregate.getNormMaxEquivalentStress();
// max_eq_stress_paste = mat_paste.getNormMaxEquivalentStress();
// max_igfem = mat_igfem.getNormMaxEquivalentStress();
// if (max_eq_stress_aggregate > max_eq_stress_paste)
// if (max_eq_stress_aggregate > max_igfem)
// nb_damaged_elements = mat_aggregate.updateDamage();
// else
// nb_damaged_elements = mat_igfem.updateDamage();
// else
// if (max_eq_stress_paste > max_igfem)
// nb_damaged_elements = mat_paste.updateDamage();
// else
// nb_damaged_elements = mat_igfem.updateDamage();
// // if (max_eq_stress_aggregate > max_eq_stress_paste)
// // nb_damaged_elements = mat_aggregate.updateDamage();
// // else
// // nb_damaged_elements = mat_paste.updateDamage();
// } while (nb_damaged_elements);
// model.dump();
// model.dump("igfem elements");
// std::cout << "the step is " << i <<std::endl;
// }
// model.dump("igfem elements");
// model.dump();
// // // Math::setTolerance(1e-14);
// // // ///dumper_igfem.dump();
// // // Array<UInt> & connectivity_igfem = const_cast<Array<UInt> &>(mesh.getConnectivity(_igfem_triangle_5));
// // growGel(sphere_list, 0.72);
// // mat_selector->update(0.72);
// // model.update(domain_name);
// // inner_radius = 0.72;
// // applyBoundaryConditions(model,inner_radius);
// // factorize = false;
// // converged = false;
// // model.dump("igfem elements");
// // model.dump();
// // converged = model.solveStep<_scm_newton_raphson_tangent, _scc_increment>(1e-4, error, 2, factorize);
// // model.dump("igfem elements");
// // model.dump();
// finalize();
return EXIT_SUCCESS;
}
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