Homec4science
Diffusion akantu (releases/4.0.0) Browse

rAKA/test/test_model/test_non_local_toolbox/plot_neighborhoods.py
9aef3a008b31releases/4.0.0

Last Change
Raw File

plot_neighborhoods.py
View Options

#!/usr/bin/env python2.7
from matplotlib import rc
import matplotlib.pyplot as plt
import matplotlib.ticker as ticker
import numpy as np
import sys
from matplotlib.backends.backend_pdf import PdfPages
#--------------------------------------------------------------------------------
def readFile(filename):
quad_x_coords = list()
quad_y_coords = list()
with open(filename) as fh:
for line in fh:
if line.strip().startswith("#"):
nb_quads = 0
line = fh.next()
x, y = [float(s) for s in line[1:-3].split(", ")]
quad_x_coords.append(float(x))
quad_y_coords.append(float(y))
return quad_x_coords, quad_y_coords
#--------------------------------------------------------------------------------
def readNeighborhoods(filename):
neighborhoods = dict()
with open(filename) as fh:
first_line = fh.readline()
key = int(first_line[0:-1].split(" ")[-1])
current_list = list()
for line in fh:
if line.strip().startswith("#"):
neighborhoods[key] = current_list
key = int(line[0:-1].split(" ")[-1])
current_list = list()
else:
coord = [float(s) for s in line[1:-3].split(", ")]
current_list.append(coord)
neighborhoods[key] = current_list
return neighborhoods
#--------------------------------------------------------------------------------
def plotNeighborhood(quad_x_coords, quad_y_coords, neighborhood, r):
nb_quads = len(quad_x_coords)
ax = plt.subplot(111)
plt.axis([-1,1,-1,1])
# plot all quads
ax.plot(quad_x_coords,quad_y_coords,label='free',linestyle='None',marker="+",markeredgewidth = 0.2, markersize = 4)
# plot center of neighborhood and circle
x = neighborhood[0][0]
y = neighborhood[0][1]
ax.plot(x,y,label='free',marker="+",markeredgewidth = 0.2, markersize = 4, color='r')
circ=plt.Circle((x,y), radius=r, color='g', fill=False)
ax.add_patch(circ)
formatter = ticker.ScalarFormatter()
formatter.set_powerlimits((-2,2))
ax.xaxis.set_major_formatter(formatter)
# plot all the neighbors
for i in range(1,len(neighborhood)):
ax.plot(neighborhood[i][0],neighborhood[i][1],label='free',linestyle='None',marker="x",markeredgewidth = 0.2, markersize = 4, color ='y')
ax.grid(b=True, which='major', color='0.75', linestyle='-',linewidth=0.5)
ax.grid(b=True, which='minor', color='0.75', linestyle='-',linewidth=0.5)
#--------------------------------------------------------------------------------
def main():
non_local_radius = 0.5
rc('text', usetex=True)
rc('font', family='serif', size=8, serif='Times')
neighborhood_file = sys.argv[1]
quad_x_coords, quad_y_coords = readFile(neighborhood_file)
nb_quads = len(quad_x_coords)
neighborhoods = readNeighborhoods(neighborhood_file)
with PdfPages('resulting_neighborhoods.pdf') as pdf:
for i in range(nb_quads):
plt.figure(1, figsize=(7/2.54, 7/2.54))
plotNeighborhood(quad_x_coords, quad_y_coords, neighborhoods[i], non_local_radius)
pdf.savefig()
plt.close()
if __name__ == "__main__":
main()
c4science · Help