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profiling.py
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Fri, May 10, 04:24
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rFUTILS futils
profiling.py
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#
# @file profiling.py
#
# @brief
#
# @copyright
# Copyright (©) 2021 EPFL (Ecole Polytechnique Fédérale de Lausanne)
# SPC (Swiss Plasma Center)
#
# futils is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option)
# any later version.
#
# futils is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
#
# @authors
# (in alphabetical order)
# @author Trach-Minh Tran <trach-minh.tran@epfl.ch>
#
#!/usr/bin/env python
import
h5py
from
pylab
import
*
import
time
,
os
,
sys
file
=
'pprof.h5'
def
mem
():
pid
=
os
.
getpid
()
arch
=
sys
.
platform
if
arch
[:
5
]
==
'linux'
:
a2
=
open
(
'/proc/
%d
/statm'
%
(
pid
,))
.
read
()
mb
=
4
*
int
(
a2
.
split
()[
1
])
/
1024.0
elif
arch
[:
6
]
==
'darwin'
:
a2
=
os
.
popen
(
'ps -p
%d
-o rss,vsz'
%
pid
)
.
readlines
()
mb
=
int
(
a2
[
1
]
.
split
()[
1
])
/
1024.0
else
:
mb
=
0
return
mb
t0
=
time
.
time
()
f
=
h5py
.
File
(
file
,
"r"
)
timeid
=
f
[
'/profile_2d/time'
]
xgid
=
f
[
'/profile_2d/xg'
]
ygid
=
f
[
'/profile_2d/yg'
]
phiid
=
f
[
'/profile_2d/phi'
]
print
"
\n
elapsed time
%.3f
s"
%
(
time
.
time
()
-
t0
,)
print
"memory used
%.3f
MB
\n
"
%
(
mem
(),)
t0
=
time
.
time
()
phi
=
phiid
[
0
,:,:]
print
"elapsed time
%.3f
s"
%
(
time
.
time
()
-
t0
,)
print
"size of phi
%.3f
MB"
%
(
4
*
size
(
phi
)
/
1024.0
/
1024.0
,)
print
"memory used
%.3f
MB
\n
"
%
(
mem
(),)
t0
=
time
.
time
()
phi
=
phiid
[
-
1
,:,:]
print
"elapsed time
%.3f
s"
%
(
time
.
time
()
-
t0
,)
print
"size of phi
%.3f
MB"
%
(
4
*
size
(
phi
)
/
1024.0
/
1024.0
,)
print
"memory used
%.3f
MB
\n
"
%
(
mem
(),)
t0
=
time
.
time
()
phi
=
phiid
[:,:,:]
print
"elapsed time
%.3f
s"
%
(
time
.
time
()
-
t0
,)
print
"size of phi
%.3f
MB"
%
(
4
*
size
(
phi
)
/
1024.0
/
1024.0
,)
print
"memory used
%.3f
MB
\n
"
%
(
mem
(),)
print
"Using Matlab/hdf5read"
matlab_com
=
"tic;phi=hdf5read('
%s
','/profile_2d/phi');toc;quit;"
%
(
file
,)
com
=
"""matlab -nojvm -nosplash -r "%s" """
%
matlab_com
stat
=
os
.
system
(
com
)
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