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rGOOSEFEM/docs/examples/Mesh/MeshQuad4-FineLayer-nodes_paraview.py
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MeshQuad4-FineLayer-nodes_paraview.py
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import numpy as np
import h5py
import GooseFEM as gf
# ====================== create fictitious configuration + store to HDF5-file ======================
# create mesh object
mesh = gf.Mesh.Quad4.FineLayer(9,17)
# set node identifier for all boundary sets
Z = lambda mesh: np.zeros((mesh.nnode()),dtype='int')
nodesBottomEdge = Z(mesh); nodesBottomEdge [mesh.nodesBottomEdge() ] = 1
nodesTopEdge = Z(mesh); nodesTopEdge [mesh.nodesTopEdge() ] = 1
nodesLeftEdge = Z(mesh); nodesLeftEdge [mesh.nodesLeftEdge() ] = 1
nodesRightEdge = Z(mesh); nodesRightEdge [mesh.nodesRightEdge() ] = 1
nodesBottomOpenEdge = Z(mesh); nodesBottomOpenEdge [mesh.nodesBottomOpenEdge() ] = 1
nodesTopOpenEdge = Z(mesh); nodesTopOpenEdge [mesh.nodesTopOpenEdge() ] = 1
nodesLeftOpenEdge = Z(mesh); nodesLeftOpenEdge [mesh.nodesLeftOpenEdge() ] = 1
nodesRightOpenEdge = Z(mesh); nodesRightOpenEdge [mesh.nodesRightOpenEdge() ] = 1
nodesBottomLeftCorner = Z(mesh); nodesBottomLeftCorner [mesh.nodesBottomLeftCorner() ] = 1
nodesBottomRightCorner = Z(mesh); nodesBottomRightCorner[mesh.nodesBottomRightCorner()] = 1
nodesTopLeftCorner = Z(mesh); nodesTopLeftCorner [mesh.nodesTopLeftCorner() ] = 1
nodesTopRightCorner = Z(mesh); nodesTopRightCorner [mesh.nodesTopRightCorner() ] = 1
# DOFs after eliminating periodicity
dofsPeriodic = mesh.dofsPeriodic()[:,0]
# open data file
f = h5py.File('MeshQuad4-FineLayer-nodes_paraview.hdf5','w')
# write nodal positions, and a dummy connectivity
f.create_dataset('/coor' ,data=mesh.coor() )
f.create_dataset('/conn' ,data=np.arange(mesh.nnode()))
f.create_dataset('/nodesBottomEdge' ,data=nodesBottomEdge )
f.create_dataset('/nodesTopEdge' ,data=nodesTopEdge )
f.create_dataset('/nodesLeftEdge' ,data=nodesLeftEdge )
f.create_dataset('/nodesRightEdge' ,data=nodesRightEdge )
f.create_dataset('/nodesBottomOpenEdge' ,data=nodesBottomOpenEdge )
f.create_dataset('/nodesTopOpenEdge' ,data=nodesTopOpenEdge )
f.create_dataset('/nodesLeftOpenEdge' ,data=nodesLeftOpenEdge )
f.create_dataset('/nodesRightOpenEdge' ,data=nodesRightOpenEdge )
f.create_dataset('/nodesBottomLeftCorner' ,data=nodesBottomLeftCorner )
f.create_dataset('/nodesBottomRightCorner',data=nodesBottomRightCorner )
f.create_dataset('/nodesTopLeftCorner' ,data=nodesTopLeftCorner )
f.create_dataset('/nodesTopRightCorner' ,data=nodesTopRightCorner )
f.create_dataset('/dofsPeriodic' ,data=dofsPeriodic )
# ======================================== write XDMF-file =========================================
# basic file-format
xdmf = '''<?xml version="1.0" ?>
<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []>
<Xdmf Version="2.0">
<Domain>
<Grid Name="Nodes">
<Topology TopologyType="Polyvertex" NumberOfElements="{nnode:d}" NodesPerElement="1">
<DataItem Dimensions="{nnode:d} 1" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/conn
</DataItem>
</Topology>
<Geometry GeometryType="XY">
<DataItem Dimensions="{nnode:d} 2" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/coor
</DataItem>
</Geometry>
<Attribute Name="nodesBottomEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesBottomEdge
</DataItem>
</Attribute>
<Attribute Name="nodesTopEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesTopEdge
</DataItem>
</Attribute>
<Attribute Name="nodesLeftEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesLeftEdge
</DataItem>
</Attribute>
<Attribute Name="nodesRightEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesRightEdge
</DataItem>
</Attribute>
<Attribute Name="nodesBottomOpenEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesBottomOpenEdge
</DataItem>
</Attribute>
<Attribute Name="nodesTopOpenEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesTopOpenEdge
</DataItem>
</Attribute>
<Attribute Name="nodesLeftOpenEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesLeftOpenEdge
</DataItem>
</Attribute>
<Attribute Name="nodesRightOpenEdge" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesRightOpenEdge
</DataItem>
</Attribute>
<Attribute Name="nodesBottomLeftCorner" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesBottomLeftCorner
</DataItem>
</Attribute>
<Attribute Name="nodesBottomRightCorner" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesBottomRightCorner
</DataItem>
</Attribute>
<Attribute Name="nodesTopLeftCorner" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesTopLeftCorner
</DataItem>
</Attribute>
<Attribute Name="nodesTopRightCorner" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/nodesTopRightCorner
</DataItem>
</Attribute>
<Attribute Name="dofsPeriodic" AttributeType="Scalar" Center="Node">
<DataItem Dimensions="{nnode:d}" NumberType="Int" Format="HDF">
MeshQuad4-FineLayer-nodes_paraview.hdf5:/dofsPeriodic
</DataItem>
</Attribute>
</Grid>
</Domain>
</Xdmf>
'''
# write to file, fill mesh dimensions
open('MeshQuad4-FineLayer-nodes_paraview.xdmf','w').write(xdmf.format(
nnode = mesh.nnode(),
))
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