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rINSTCONTROL/@MyLorentzianFit/MyLorentzianFit.m
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MyLorentzianFit.m
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classdef MyLorentzianFit < MyFit
properties (Access=public)
%Logical value that determines whether the data should be scaled or
%not
scale_data;
end
%Public methods
methods (Access=public)
%Constructor function
function this=MyLorentzianFit(varargin)
this@MyFit(...
'fit_name','Lorentzian',...
'fit_function','1/pi*a*b/2/((x-c)^2+(b/2)^2)+d',...
'fit_tex','$$\frac{a}{\pi}\frac{b/2}{(x-c)^2+(b/2)^2}+d$$',...
'fit_params', {'a','b','c','d'},...
'fit_param_names',{'Amplitude','Width','Center','Offset'},...
varargin{:});
end
end
methods (Access=protected)
%Overload the doFit function to do scaled fits.
%We here have the choice of whether to scale the data or not.
function doFit(this)
if this.scale_data
ft=fittype(this.fit_function,'coefficients',...
this.fit_params);
opts=fitoptions('Method','NonLinearLeastSquares',...
'Lower',convRealToScaledCoeffs(this,this.lim_lower),...
'Upper',convRealToScaledCoeffs(this,this.lim_upper),...
'StartPoint',convRealToScaledCoeffs(this,this.init_params),...
'MaxFunEvals',2000,...
'MaxIter',2000,...
'TolFun',1e-6,...
'TolX',1e-6);
%Fits with the below properties. Chosen for maximum accuracy.
[this.Fitdata,this.Gof,this.FitInfo]=...
fit(this.Data.scaled_x,this.Data.scaled_y,ft,opts);
%Puts the coeffs into the class variable.
this.coeffs=convScaledToRealCoeffs(this,...
coeffvalues(this.Fitdata));
else
%Do the default fitting if we are not scaling.
doFit@MyFit(this);
end
calcUserParams(this);
end
function [init_params,lim_lower,lim_upper]=calcInitParams(this)
if this.scale_data
[init_params,lim_lower,lim_upper]=...
initParamLorentzian(this.Data.scaled_x,this.Data.scaled_y);
init_params=convScaledToRealCoeffs(this,init_params);
lim_lower=convScaledToRealCoeffs(this,lim_lower);
lim_upper=convScaledToRealCoeffs(this,lim_upper);
else
[init_params,lim_lower,lim_upper]=...
initParamLorentzian(this.Data.x,this.Data.y);
end
end
function calcUserParams(this)
this.mech_lw=this.coeffs(2);
this.mech_freq=this.coeffs(3);
this.Q=this.mech_freq/this.mech_lw;
this.opt_lw=convOptFreq(this,this.coeffs(2));
this.Qf=this.mech_freq*this.Q;
end
function createUserGuiStruct(this)
%Parameters for the tab relating to mechanics
this.UserGui.Tabs.Mech.tab_title='Mech.';
this.UserGui.Tabs.Mech.Children={};
addUserField(this,'Mech','mech_lw','Linewidth (Hz)',1,...
'enable_flag','off')
addUserField(this,'Mech','Q',...
'Qualify Factor (x10^6)',1e6,...
'enable_flag','off','conv_factor',1e6)
addUserField(this,'Mech','mech_freq','Frequency (MHz)',1e6,...
'conv_factor',1e6, 'enable_flag','off')
addUserField(this,'Mech','Qf','Q\times f (10^{14} Hz)',1e14,...
'conv_factor',1e14,'enable_flag','off');
%Parameters for the tab relating to optics
this.UserGui.Tabs.Opt.tab_title='Optical';
this.UserGui.Tabs.Opt.Children={};
addUserField(this,'Opt','spacing',...
'Line Spacing (MHz)',1e6,'conv_factor',1e6,...
'Callback', @(~,~) calcUserParams(this));
addUserField(this,'Opt','line_no','Number of lines',10,...
'Callback', @(~,~) calcUserParams(this));
addUserField(this,'Opt','opt_lw','Linewidth (MHz)',1e6,...
'enable_flag','off','conv_factor',1e6);
end
end
methods (Access=private)
%Converts scaled coefficients to real coefficients
function r_c=convScaledToRealCoeffs(this,s_c)
[mean_x,std_x,mean_y,std_y]=calcZScore(this.Data);
r_c(1)=s_c(1)*std_y*std_x;
r_c(2)=s_c(2)*std_x;
r_c(3)=s_c(3)*std_x+mean_x;
r_c(4)=s_c(4)*std_y+mean_y;
end
function s_c=convRealToScaledCoeffs(this,r_c)
[mean_x,std_x,mean_y,std_y]=calcZScore(this.Data);
s_c(1)=r_c(1)/(std_y*std_x);
s_c(2)=r_c(2)/std_x;
s_c(3)=(r_c(3)-mean_x)/std_x;
s_c(4)=(r_c(4)-mean_y)/std_y;
end
end
end
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