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rINSTCONTROL/@MyPeakFinderGui/MyPeakFinderGui.m
ddfc1e3685f5confint-fix

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MyPeakFinderGui.m
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classdef MyPeakFinderGui < handle
properties
PeakFinder
Gui;
axis_handle;
end
properties (Access=private)
peak_color='r';
data_color='b';
peak_handle;
end
properties (Dependent=true)
trace_handle;
filename;
session_name;
base_dir;
save_dir;
end
methods
function this=MyPeakFinderGui()
this.PeakFinder=MyPeakFinder();
createGui(this);
end
function delete(this)
%Avoids loops
set(this.Gui.Window,'CloseRequestFcn','');
%Deletes the figure
delete(this.Gui.Window);
%Removes the figure handle to prevent memory leaks
this.Gui=[];
end
function closeFigure(this, ~, ~)
delete(this);
end
function analyzeCallback(this, src, ~)
src.BackgroundColor=[1,0,0];
src.String='Analyzing..';
searchPeaks(this.PeakFinder,...
'MinPeakProminence',str2double(this.Gui.PromEdit.String),...
'MinPeakDistance',str2double(this.Gui.SepEdit.String),...
'FindMinima',this.Gui.MinimaCheck.Value,...
'WidthReference','halfprom');
plotPeaks(this);
src.BackgroundColor=[0.94,0.94,0.94];
src.String='Analyze';
end
function plotPeaks(this)
delete(this.peak_handle);
this.peak_handle=plot(this.axis_handle,...
[this.PeakFinder.Peaks.Location],...
[this.PeakFinder.Peaks.Value],...
'Marker','o',...
'LineStyle','none',...
'Color',this.peak_color);
end
function fitPeakCallback(this,~,~)
%Clean up fit names
fit_names=cellfun(@(x) erase(x,' '), this.Gui.SelFitList.String,...
'UniformOutput',false);
fitAllPeaks(this.PeakFinder,...
'FitNames',fit_names,...
'base_dir',this.base_dir,...
'session_name',this.session_name,...
'filename',this.filename,...
'fit_width',str2double(this.Gui.FitWidthEdit.String));
end
function clickCallback(this,~,~)
switch this.Gui.Window.SelectionType
case 'normal' %Left click
addPeak(this);
case 'alt' %Right click
axis(this.axis_handle,'tight')
case 'extend' %Shift click
coords=this.axis_handle.CurrentPoint;
removePeak(this, coords(1));
otherwise
end
end
function windowScrollCallback(this, ~, event)
coords=this.axis_handle.CurrentPoint;
if event.VerticalScrollCount>0
%Zoom out
zoomAxis(this,coords(1),0.1)
else
%Zoom in
zoomAxis(this,coords(1),10);
end
end
function removePeak(this, coord)
[~,ind]=min(abs([this.PeakFinder.Peaks.Location]-coord));
this.PeakFinder.Peaks(ind)=[];
plotPeaks(this);
end
function addPeak(this)
x_lim=[this.axis_handle.XLim(1),...
this.axis_handle.XLim(2)];
if checkPeakExist(this.PeakFinder,x_lim(1),x_lim(2))
opts=struct('WindowStyle','modal','Interpreter','tex');
errordlg(['A peak already exists in the window. ',...
'To add a new peak, zoom such that there is ',...
'no peak in the window'],'Error',opts);
return
end
searchPeaks(this.PeakFinder,...
'ClearPeaks',false,...
'Limits',x_lim,...
'MinPeakProminence',str2double(this.Gui.PromEdit.String),...
'FindMinima',this.Gui.MinimaCheck.Value,...
'NPeaks',1,...
'SortStr','descend');
plotPeaks(this);
end
function zoomAxis(this,coords,zoom_factor)
curr_width=this.axis_handle.XLim(2)-this.axis_handle.XLim(1);
new_width=curr_width/zoom_factor;
this.axis_handle.XLim=...
[coords(1)-new_width/2,coords(1)+new_width/2];
end
function clearCallback(this, ~, ~)
delete(getLine(this.PeakFinder.Trace,this.axis_handle));
clearData(this.PeakFinder.Trace);
cla(this.axis_handle);
end
function loadTraceCallback(this, src, ~)
%Window can find all files
[fname,path]=uigetfile('*.*');
if fname==0
warning('No file was selected');
return
end
src.BackgroundColor=[1,0,0];
src.String='Loading..';
loadTrace(this.PeakFinder,[path,fname]);
plot(this.PeakFinder.Trace,this.axis_handle);
this.trace_handle.ButtonDownFcn=...
@(src, event) clickCallback(this, src, event);
exitLoad(this);
end
function exitLoad(this)
this.Gui.LoadTraceButton.BackgroundColor=[0.94,0.94,0.94];
this.Gui.LoadTraceButton.String='Load trace';
end
function savePeaksCallback(this,~,~)
save(this.PeakFinder,...
'save_dir',this.save_dir,...
'filename',this.filename);
end
function loadPeaksCallback(this,~,~)
[fname,path]=uigetfile('*.*');
if fname==0
warning('No file was selected');
return
end
loadPeaks(this.PeakFinder,[path,fname]);
plotPeaks(this);
end
function clearPeaksCallback(this,~,~)
clearPeaks(this.PeakFinder);
delete(this.peak_handle);
end
%Add a fit to the selected list
function addFitCallback(this,~,~)
val=this.Gui.FitList.Value;
if val==0; return; end
this.Gui.SelFitList.String{end+1}=this.Gui.FitList.String{val};
this.Gui.FitList.String(val)=[];
if val>length(this.Gui.FitList.String)
this.Gui.FitList.Value=length(this.Gui.FitList.String);
end
if this.Gui.SelFitList.Value==0
this.Gui.SelFitList.Value=1;
end
end
%Remove fits from selected fits
function removeFitCallback(this,~,~)
val=this.Gui.SelFitList.Value;
if val==0; return; end
this.Gui.FitList.String{end+1}=this.Gui.SelFitList.String{val};
this.Gui.SelFitList.String(val)=[];
if val>length(this.Gui.SelFitList.String)
this.Gui.SelFitList.Value=length(this.Gui.SelFitList.String);
end
if this.Gui.FitList.Value==0
this.Gui.FitList.Value=1;
end
end
end
methods
function trace_handle=get.trace_handle(this)
trace_handle=getLine(this.PeakFinder.Trace,this.axis_handle);
end
function base_dir=get.base_dir(this)
try
base_dir=this.Gui.BaseEdit.String;
catch
base_dir=pwd;
end
end
function set.base_dir(this,base_dir)
this.Gui.BaseEdit.String=base_dir;
end
function session_name=get.session_name(this)
try
session_name=this.Gui.SessionEdit.String;
catch
session_name='';
end
end
function set.session_name(this,session_name)
this.Gui.SessionEdit.String=session_name;
end
function filename=get.filename(this)
try
filename=this.Gui.FileNameEdit.String;
catch
filename='placeholder';
end
end
function set.filename(this,filename)
this.Gui.FileNameEdit.String=filename;
end
%Get function from save directory
function save_dir=get.save_dir(this)
save_dir=createSessionPath(this.base_dir,this.session_name);
end
end
end
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