in.rhodo.scaled
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	# Rhodopsin model

	variable x index 1
	variable y index 1
	variable z index 1

	units real
	neigh_modify delay 5 every 1

	atom_style full
	atom_modify map hash
	bond_style harmonic
	angle_style charmm
	dihedral_style charmm
	improper_style harmonic
	pair_style lj/charmm/coul/long 8.0 10.0
	pair_modify mix arithmetic
	kspace_style pppm 1e-4

	read_data data.rhodo

	replicate $x $y $z

	fix 1 all shake 0.0001 5 0 m 1.0 a 232
	fix 2 all npt 300.0 300.0 100.0 &
	aniso NULL NULL NULL NULL 0.0 0.0 1000.0

	special_bonds charmm

	thermo 50
	thermo_style multi
	timestep 2.0

	run 100