add comments on script to check quality of input files

add comments on script to modify the input files before analses

add correction of script to check quality of input files

With correction

Correct the working directory path

correct some errors on script

Check the quality of the trimming/filtering using fastqc and multiqc.

Check the sorting info using multiqc on the log files obtained after SortMeRNA.

After mergin the reads, we obtain two files for each samples: merged and…

After merging a control of the isnert size, numbers of merged reads... was…

Script to carry out the merging of the reads using BBmerge. The merging was…

Script to align reads containing rRNA (where sortmeRNA was not carried out)…

erased useless line

add a script for mapping on annotation of d427

Script to convert SAM files into BAM files (save some space) and to sort reads…

add comments

Script to align reads after sorting rRNA using bowtie2. Use of the metagenome…

Script to obtain the number of reads which aligned on the different databases

Script to detect rRNA in the reads files using cmsearch

Script to remove the rRNA using SortMeRNA. Use all the databases provided by…

Script to check the results obtained from the sorting step using fastqc on the…

Script to trimm and filter the adapters, low quality reads... using BBDuk

Script to check the filtering using fastqc and multiqc to summerised the results

script to check the quality of the reads jsut after sequencing - modfication of…

Modification of the files obtained from the sequencing platform by…

deposition of the first file in the repository

new repository