Open nanopore:
https://c4science.ch/source/Nanopore-tools/
Open Chimera:
https://c4science.ch/source/ChimeraPython/
User Details
User Details
- User Since
- Sep 15 2016, 10:13 (428 w, 11 h)
- Availability
- Available
- Organization
- epfl.ch (university)
Aug 20 2020
Aug 20 2020
add lowpass to getdata
Dec 23 2019
Dec 23 2019
deen committed rNPTOOLS9d5adb07ce5b: Added changes to load OPT files from Axopatch (Manunu lab) (authored by deen).
Added changes to load OPT files from Axopatch (Manunu lab)
Nov 12 2019
Nov 12 2019
forgot to change variable to variable_
Modified Plotting, should show legend now
Added print saving
Changed histogram color to fill_color
deen committed rNPTOOLS086bb13045e3: Moved old PlotGTauVoltage to EventPlotsOld.py Added new function to save… (authored by deen).
Moved old PlotGTauVoltage to EventPlotsOld.py Added new function to save…
Changed colors of histogram plot
Nov 11 2019
Nov 11 2019
deen committed rNPTOOLSaed240124e06: Modified GetAllvoltages, the list is sorted and converted to a list, rather… (authored by deen).
Modified GetAllvoltages, the list is sorted and converted to a list, rather…
Oct 30 2019
Oct 30 2019
deen committed rNPTOOLSb6f82fe2cc56: Minor fixes. Didn't show IV plot. Incorrect ylabel PlotGTau (authored by deen).
Minor fixes. Didn't show IV plot. Incorrect ylabel PlotGTau
Sep 25 2019
Sep 25 2019
Host on github instead
Sep 24 2019
Sep 24 2019
Added example jupyter notebook file
Fixed normalization....
incorrect sign........
deen committed rNPTOOLS132c8862bede: Bugfix when no values in x and y while plotting log histogram (authored by deen).
Bugfix when no values in x and y while plotting log histogram
Added log option for histogram
Added showNonFitted to PlotGTau
Fixed Lowpass of current trace
Added LowPassAndResample
Disable printing filename
deen committed rNPTOOLSa5527b525d73: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Sep 22 2019
Sep 22 2019
Aug 7 2019
Aug 7 2019
added return value
Aug 6 2019
Aug 6 2019
Added holoviews histogram plotting
Jul 24 2019
Jul 24 2019
Removed flush_events
Jul 23 2019
Jul 23 2019
Changed to check for string
Jul 22 2019
Jul 22 2019
Jul 15 2019
Jul 15 2019
Added relative delta for
deen committed rNPTOOLSc92f4f7241ef: Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into… (authored by deen).
Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into…
Added check for small size
Jul 12 2019
Jul 12 2019
removed event flushing
Minor modifications in saving
Jun 14 2019
Jun 14 2019
deen committed rNPTOOLSf283e2d1368a: Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into… (authored by deen).
Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into…
Analysis UI created
Jun 13 2019
Jun 13 2019
Initial gui for analysis plotting
Jun 12 2019
Jun 12 2019
Moved sorting
Minor cosmetic changes
Modified MakeIndividualIVs
deen committed rNPTOOLS3b8380e96bc8: Minor changes for plotting Bokeh in Jupyter (authored by deen).
Minor changes for plotting Bokeh in Jupyter
sort Voltages
changed variable name
disabled nonfitted events by default
deen committed rNPTOOLS34c4670c4cf8: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Jun 11 2019
Jun 11 2019
Added relative delta for CUSUM fitting
Added more printing for debugging
Plotting with Currentdrop
deen committed rNPTOOLS0a68ff931638: Added line in EventPlots for plotting in Jupyter Notebook (authored by deen).
Added line in EventPlots for plotting in Jupyter Notebook
deen committed rNPTOOLS96d8adf9e29d: Changed type of CUSUM fitted events to 'CUSUM' (authored by deen).
Changed type of CUSUM fitted events to 'CUSUM'
changed eventLengthCUSUM assignation
CUSUM needs at least 2 levels, not 3
Reorganized so event adding is more clear
modified printing
Minor changes in printing
Added saving of currentDrop for impulse
deen committed rNPTOOLS5ffc7919fc39: modified verboseLevel and added check for integer (authored by deen).
modified verboseLevel and added check for integer
modified check
Modified coefficients
Jun 7 2019
Jun 7 2019
deen committed rNPTOOLSebb436057178: Modified detection of events, added option to fit traces with function and use… (authored by deen).
Modified detection of events, added option to fit traces with function and use…
May 10 2019
May 10 2019
Fixed saving of voltage
deen committed rCHIMERAPYTHONdf2c9f4b4313: Quick fix ResetBuffer bug, will collect first stream and delete after reset… (authored by deen).
Quick fix ResetBuffer bug, will collect first stream and delete after reset…
May 9 2019
May 9 2019
Modified plotting of PSD
May 8 2019
May 8 2019
deen committed rCHIMERAPYTHONb05d64535bd8: Added voltage in plotting IV Change setting of Voltage, always run SetVoltage… (authored by deen).
Added voltage in plotting IV Change setting of Voltage, always run SetVoltage…
May 7 2019
May 7 2019
Added option to add datafolder
Added savingfolder for IV
Added biasboltage to saving
Apr 9 2019
Apr 9 2019
deen committed rCHIMERAPYTHON6f4957c61997: Merge branch 'master' of ssh://c4science.ch/source/ChimeraPython (authored by deen).
Merge branch 'master' of ssh://c4science.ch/source/ChimeraPython
deen committed rCHIMERAPYTHON89e28d7bb6fc: added saving and loading of store.pckl and added function to manually set… (authored by deen).
added saving and loading of store.pckl and added function to manually set…
deen committed rCHIMERAPYTHONb5374e4df806: Shitty fix for totalevents, if both upward and downward event detection (authored by deen).
Shitty fix for totalevents, if both upward and downward event detection
Apr 8 2019
Apr 8 2019
deen committed rCHIMERAPYTHON63b9b4be342e: Changed saveDownsampled to initial value rather than default false after IV (authored by deen).
Changed saveDownsampled to initial value rather than default false after IV
deen committed rNPTOOLSdba5e49293d7: Am idiot, moved up definition of slope, also cleaned up slightly (authored by deen).
Am idiot, moved up definition of slope, also cleaned up slightly
deen committed rNPTOOLS2b36f610b798: Add return for pore size from MakeIndividualIVs (authored by deen).
Add return for pore size from MakeIndividualIVs
deen committed rCHIMERAPYTHON07b7e9704020: Set new default parameters for IV Add some comments Restore initial values… (authored by deen).
Set new default parameters for IV Add some comments Restore initial values…
Apr 3 2019
Apr 3 2019
Removed some prints
Modified where it is absolute
Set to Mac OS
Default value for IV
Default set to ExpFit
Absolute value for slope
deen committed rNPTOOLS5b31c6b182e4: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Added saving of Voltages
Minor changes
Return filename
Addedsdfsagergy3qe4y43e5
modified Xlims
deen committed rCHIMERAPYTHONec4984ba819a: Added title, changed refresh mechanism of plot (authored by deen).
Added title, changed refresh mechanism of plot
deen committed rCHIMERAPYTHON3b6ebe2919d9: Plotting now a list rather than add to existing (authored by deen).
Plotting now a list rather than add to existing
deen committed rCHIMERAPYTHONa62219da2425: Changed file saving, show plot earlier (authored by deen).
Changed file saving, show plot earlier
Modified plotting
Make All Voltages for IV function