User Details
User Details
- User Since
- Oct 18 2016, 18:08 (426 w, 3 d)
- Availability
- Available
- Organization
- epfl.ch (university)
Feb 28 2019
Feb 28 2019
mickmis published a new version of MedCo Project.
Oct 12 2018
Oct 12 2018
mickmis committed R4434:d05b9fdf3c57: another test query; disable ssl for query (authored by mickmis).
another test query; disable ssl for query
Aug 17 2018
Aug 17 2018
last modifications
Jul 23 2018
Jul 23 2018
take master for i2b2-medco-cell
mickmis committed R4434:475f8d34606d: update regex to not need the end slash in query (authored by mickmis).
update regex to not need the end slash in query
Jul 21 2018
Jul 21 2018
fix unlynx bin name
mickmis committed R4444:338de6686b66: Revert "Revert "update unlynx docker image to use again the medco repo"" (authored by mickmis).
Revert "Revert "update unlynx docker image to use again the medco repo""
Jul 20 2018
Jul 20 2018
change i2b2 version
fix loading data i2b2
update group.toml to new format
mickmis committed R4444:2a27a193ba7c: Revert "update unlynx docker image to use again the medco repo" (authored by mickmis).
Revert "update unlynx docker image to use again the medco repo"
mickmis committed R4444:b6b4fa64dd2b: update unlynx docker image to use again the medco repo (authored by mickmis).
update unlynx docker image to use again the medco repo
Jul 17 2018
Jul 17 2018
mickmis committed R4444:6ee592a9a42b: fix env vars not properly set at runtime (authored by mickmis).
fix env vars not properly set at runtime
mickmis committed R4444:e8dcd143285a: update keys of dev-3nodes-samehost-noshrine: need the old format (authored by mickmis).
update keys of dev-3nodes-samehost-noshrine: need the old format
Jul 16 2018
Jul 16 2018
update network names
mickmis committed R4444:f68c35c19dfe: cleanup for shrine removal: configuration and compose profiles, i2b2-database… (authored by mickmis).
cleanup for shrine removal: configuration and compose profiles, i2b2-database…
mickmis committed R4444:7d3798bfa5da: configuration and config dev-3nodes-samehost-noshrine (authored by mickmis).
configuration and config dev-3nodes-samehost-noshrine
mickmis committed R4444:f15e925812b3: add i2b2-medco image, missing scripts for i2b2 (authored by mickmis).
add i2b2-medco image, missing scripts for i2b2
unlynx image modifications
i2b2 image modifications
Jul 11 2018
Jul 11 2018
new i2b2 docker version
Apr 29 2018
Apr 29 2018
change to genomic annotations format
Apr 28 2018
Apr 28 2018
mickmis committed R4444:c678c56a73c6: remove some things to fit the new loader (authored by mickmis).
remove some things to fit the new loader
unlynx ports change
mickmis committed R4444:2c1fe68f9d8b: change docker compose service names to avoid conflicts (authored by mickmis).
change docker compose service names to avoid conflicts
mickmis committed R4444:22818998894c: 6 nodes profile and modif of common dockerfile (authored by mickmis).
6 nodes profile and modif of common dockerfile
mickmis committed R4444:e96e40e76624: Merge branch 'master' of ssh://c4science.ch/source/medco-deployment (authored by mickmis).
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
allow non unique DN in certs
Apr 26 2018
Apr 26 2018
i2b2 service client add timeout
Apr 24 2018
Apr 24 2018
mickmis committed R4434:d9d0115136c2: update i2b2common-core lib with timeout (authored by mickmis).
update i2b2common-core lib with timeout
mickmis committed R4444:b85d3211ec44: Merge branch 'master' of ssh://c4science.ch/source/medco-deployment (authored by mickmis).
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
mickmis committed R4444:473907479c35: higher timeout value ; master branch for medco cell (authored by mickmis).
higher timeout value ; master branch for medco cell
larger timeout value for medco cell
mickmis committed R2664:03f1900a213d: MySQL DDL: change some columns from TEXT to MEDIUMTEXT (authored by mickmis).
MySQL DDL: change some columns from TEXT to MEDIUMTEXT
mickmis committed R2664:63b13aa53258: Merge branch 'fork/1.22.8-medco' of ssh://c4science.ch/source/shrine-medco into… (authored by mickmis).
Merge branch 'fork/1.22.8-medco' of ssh://c4science.ch/source/shrine-medco into…
Apr 17 2018
Apr 17 2018
mickmis committed R4444:b3c3b9c27e67: Merge branch 'master' of ssh://c4science.ch/source/medco-deployment (authored by mickmis).
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
fix for conf w/ 1 CA
mickmis committed R4444:96acc4f9cc90: Merge branch 'master' of ssh://c4science.ch/source/medco-deployment (authored by mickmis).
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
mickmis committed R4444:14611c3679e6: change config generate tool dev profile to use 1 CA (authored by mickmis).
change config generate tool dev profile to use 1 CA
Revert "attempt at fixing bug"
mickmis added a reverting change for R2664:06cc6e018246: attempt at fixing bug: R2664:d4d9b80b2ada: Revert "attempt at fixing bug".
Apr 12 2018
Apr 12 2018
change shrine version
attempt at fixing bug
attempt at fixing bug
regen profile
hotfix shrine keystore
Apr 10 2018
Apr 10 2018
mickmis committed R4444:3b43146d1c1a: get newLoader branch for unlynx docker image (authored by mickmis).
get newLoader branch for unlynx docker image
Apr 8 2018
Apr 8 2018
tmp fix: URLs of shrine resources
unlynx keys update IP addresses
Feb 9 2018
Feb 9 2018
fix profile dev-3nodes-samehost
add pull of version release v0.1
added documentation
add prod config generation tool
Jan 23 2018
Jan 23 2018
mickmis committed R4444:5780662b9be3: finish configuration generation script, unlynx adaptations to generate keys (authored by mickmis).
finish configuration generation script, unlynx adaptations to generate keys
Jan 16 2018
Jan 16 2018
mickmis edited the content of MedCo Project.
Jan 14 2018
Jan 14 2018
fix docker compose profile volume path
mickmis committed R4444:44b78822cb0b: icclusters docker compose profile: update (authored by mickmis).
icclusters docker compose profile: update
mickmis committed R4444:e41e3c42471d: check out latest onet.v1 in unlynx dockerfile (authored by mickmis).
check out latest onet.v1 in unlynx dockerfile
mickmis committed R4444:d6649096d120: update configuration profile icclusters (authored by mickmis).
update configuration profile icclusters
Dec 20 2017
Dec 20 2017
mickmis edited the content of MedCo Project.
Dec 5 2017
Dec 5 2017
mickmis committed R4444:b466734e6d13: loading example set: add M visual attributes case (authored by mickmis).
loading example set: add M visual attributes case
mickmis updated subscribers of MedCo Project.
mickmis updated subscribers of MedCo Project.
mickmis updated subscribers of MedCo Project.
mickmis edited the content of MedCo Project.
Dec 1 2017
Dec 1 2017
mickmis updated subscribers of MedCo Project.
mickmis edited the content of MedCo Project.
Nov 28 2017
Nov 28 2017
mickmis committed R4434:4433c487afef: set timers as object instead of class (resolve axis2 scope issues) (authored by mickmis).
set timers as object instead of class (resolve axis2 scope issues)
unlynx get maser branch
Merge branch 'shrineintegration'
cleanup config tool
untrack some files
remove arguments from compose files
client code
cleanup server code
Nov 27 2017
Nov 27 2017
mickmis committed R4444:f36a691f708e: add the i2b2 example data for medco loading from i2b2 database (authored by mickmis).
add the i2b2 example data for medco loading from i2b2 database
fix i2b2 original data loading
Nov 23 2017
Nov 23 2017
Nov 21 2017
Nov 21 2017
mickmis committed R4444:1cce961a725d: first attempt at i2b2 demo reintegration (authored by mickmis).
first attempt at i2b2 demo reintegration
Nov 20 2017
Nov 20 2017
mickmis committed R2664:d67b789850a5: modify table name: genomic_annotations_new > genomic_annotations (authored by mickmis).
modify table name: genomic_annotations_new > genomic_annotations
mickmis committed R2664:5b95fe875e55: php sql queries: remove schema shrine_ont from queries (authored by mickmis).
php sql queries: remove schema shrine_ont from queries
Nov 16 2017
Nov 16 2017
mickmis committed R4444:e220fcddb36a: fix shrine log level srv1 - dev-3nodes-samehost (authored by mickmis).
fix shrine log level srv1 - dev-3nodes-samehost
add env var to update script
Nov 13 2017
Nov 13 2017
fix environment variables problem
fix user rights i2b2-web final
fix user rights i2b2-web
fix user rights i2b2-web
Nov 10 2017
Nov 10 2017
fix env vars
fix update script
fix update script
shrine-server log level -> fine
shrine-server log level -> debug
mickmis committed R4444:66e6507a91cb: update dev-3nodes-samehost configuration (authored by mickmis).
update dev-3nodes-samehost configuration
mickmis committed R4444:acebd5d9a356: update dev-3nodes-samehost configuration (authored by mickmis).
update dev-3nodes-samehost configuration