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Big Image Fusion with BigDataViewer Playground
/w/bioimaging_and_optics_platform_biop/image-processing/image-fusion/
Jun 17 2022, 13:39
Edited by chiarutt
Image Combiner Warpy - Additional Information
/w/warpy/imagecombinerwarpy/addinfo/
Nov 4 2022, 14:25
Edited by chiarutt
CO2 Confocal Room
/w/bioimaging_and_optics_platform_biop/co2_confocal_room/
Aug 16 2022, 13:14
Edited by oburri
ZEISS Lattice Lightsheet 7 - LLS7
/w/bioimaging_and_optics_platform_biop/microscopy/zeiss-lattice-7/
Jun 14 2022, 12:48
Edited by chiarutt
Qupath Extension Biop
/w/bioimaging_and_optics_platform_biop/image-processing/qupath-0.3.x/qupath-extension-biop/
Nov 23 2021, 14:21
Edited by oburri
Warpy Extension
/w/warpy/warpy-extension/
Nov 4 2022, 14:24
Edited by chiarutt
Image Combiner Warpy
/w/warpy/imagecombinerwarpy/
Nov 4 2022, 14:24
Edited by chiarutt
Warpy - Whole Slide Image (WSI) Registration With ImageJ/Fiji, Elastix and QuPath
/w/warpy/
Nov 4 2022, 14:24
Edited by chiarutt
SVRAW1
/w/bioimaging_and_optics_platform_biop/computers-servers/svraw1/
Oct 26 2021, 10:12
Edited by oburri
Python venv Setup for Deep Learning Resources
/w/bioimaging_and_optics_platform_biop/computers-servers/software/gpu-deep-learning/python-venv/
Dec 8 2021, 13:09
Edited by oburri
Create OMERO.tables and analyze metadata using OMERO.parade
/w/bioimaging_and_optics_platform_biop/image-processing/omero/analysis/omerotablesandparade/
Jul 26 2022, 17:12
Edited by dornier
sv-renku.epfl.ch
/w/bioimaging_and_optics_platform_biop/computers-servers/sv-renku/
Sep 7 2021, 12:20
Edited by romainGuiet
FFMPEG
/w/bioimaging_and_optics_platform_biop/image-processing/ffmpeg/
Jan 27 2022, 15:08
Edited by oburri
Analyze OMERO data using Fiji
/w/bioimaging_and_optics_platform_biop/image-processing/omero/analysis/fiji/
Jul 26 2022, 17:11
Edited by dornier
Viewing Data
/w/bioimaging_and_optics_platform_biop/image-processing/omero/viewing/
Jul 26 2022, 17:09
Edited by dornier
How to import to OMERO depending on the file-format
/w/bioimaging_and_optics_platform_biop/image-processing/omero/data-upload/file-formats/
Aug 5 2022, 12:58
Edited by dornier
Annotate Data and Filter using Annotations
/w/bioimaging_and_optics_platform_biop/image-processing/omero/annotating-data/
Jul 26 2022, 17:09
Edited by dornier
Publish data using OMERO web
/w/bioimaging_and_optics_platform_biop/image-processing/omero/publish/
Jul 26 2022, 17:11
Edited by dornier
Analyze OMERO data using external softwares
/w/bioimaging_and_optics_platform_biop/image-processing/omero/analysis/
Jan 27 2022, 16:56
Edited by stoffel
[OBSOLETE] Whole Slide Image (WSI) Registration With ImageJ/Fiji, Elastix and QuPath
/w/bioimaging_and_optics_platform_biop/image-processing/wsi_registration_fjii_qupath/
Jan 10 2022, 10:13
Edited by chiarutt
Creating figures with the OMERO.figures web app
/w/bioimaging_and_optics_platform_biop/image-processing/omero/figures/
Jul 26 2022, 17:10
Edited by dornier
Managing data
/w/bioimaging_and_optics_platform_biop/image-processing/omero/managing-data/
Jul 26 2022, 17:10
Edited by dornier
Importing (and downloading) images
/w/bioimaging_and_optics_platform_biop/image-processing/omero/data-upload/
Jul 26 2022, 17:14
Edited by dornier
EPFL OMERO account creation
/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation/
Jul 26 2022, 17:10
Edited by dornier
Composing an URL to pre-fill an image.sc forum post
/w/bioimaging_and_optics_platform_biop/image-processing/autofill-forum-post/
Mar 11 2021, 13:59
Edited by chiarutt
Analyze data using R (statistical package)
/w/bioimaging_and_optics_platform_biop/image-processing/omero/pilote/omero-r/
Aug 5 2022, 14:34
Edited by dornier
Analyze OMERO data using QuPath
/w/bioimaging_and_optics_platform_biop/image-processing/omero/pilote/qupath/
Aug 5 2022, 14:20
Edited by dornier
Publishing data using OMERO.web
/w/bioimaging_and_optics_platform_biop/image-processing/omero/pilote/publish-data/
Aug 5 2022, 13:01
Edited by dornier
OMERO Pilot
/w/bioimaging_and_optics_platform_biop/image-processing/omero/pilote/
Aug 5 2022, 14:45
Edited by dornier
Sharing Data
/w/bioimaging_and_optics_platform_biop/computers-servers/sharing_data/
Mar 10 2022, 12:09
Edited by oburri
SCITAS GPU Clusters Protocols
/w/bioimaging_and_optics_platform_biop/image-processing/machine-learning/deep-learning/clusters/
Jan 4 2021, 14:38
Edited by oburri
How To Implement Text Search for Non-Linear Texts
/w/der_sp%C3%A4te_nietzsche/how_to_implement_text_search/
Feb 2 2022, 10:13
Edited by steinech
BIOP GISTS
/w/bioimaging_and_optics_platform_biop/image-processing/biop-gists/
Mar 29 2022, 14:02
Edited by chiarutt
Getting the hash from a file
/w/bioimaging_and_optics_platform_biop/computers-servers/file-hashes/
Oct 20 2020, 09:30
Edited by oburri
QuPath BIOP Extension
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/qupath-biop-extension/
Sep 18 2020, 10:48
Edited by oburri
QuPath 0.2.x
/w/bioimaging_and_optics_platform_biop/image-processing/qupath2/
Nov 10 2021, 11:31
Edited by chiarutt
Optimized Pyramidal OME.TIFF Conversion for Whole Slide Images
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/ome-tiff-conversion/
Nov 11 2022, 13:15
Edited by chiarutt
2020 Week 20 (Late May)
/w/c4science/changelog/20201705/
Jun 9 2020, 15:33
Edited by aubort
Deprecated - Miniconda Setup for Cellpose
/w/bioimaging_and_optics_platform_biop/computers-servers/software/gpu-deep-learning/cellpose/
Oct 15 2020, 12:33
Edited by oburri
Deprecated - Miniconda Setup for StarDist
/w/bioimaging_and_optics_platform_biop/computers-servers/software/gpu-deep-learning/miniconda/
Oct 15 2020, 12:33
Edited by oburri
GPU and Deep Learning Resources
/w/bioimaging_and_optics_platform_biop/computers-servers/software/gpu-deep-learning/
Oct 15 2020, 12:05
Edited by oburri
Cleaning-checklist
/w/bioimaging_and_optics_platform_biop/covid-19/cleaning-checklist/
Jun 15 2020, 13:26
Edited by chiarutt
SVFAS6
/w/bioimaging_and_optics_platform_biop/computers-servers/svfas6/
Oct 26 2021, 09:56
Edited by oburri
2020 Week 15 (Mid April)
/w/c4science/changelog/20200405/
Apr 6 2020, 14:17
Edited by aubort
ilastik
/w/bioimaging_and_optics_platform_biop/image-processing/ilastik/
Feb 14 2020, 11:02
Edited by romainGuiet
Lightning
/w/bioimaging_and_optics_platform_biop/image-processing/lightning/
Feb 11 2020, 11:13
Edited by romainGuiet
Fiji ilastik Bridge
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/fiji_ilastik_bridge/
Feb 14 2020, 11:02
Edited by romainGuiet
Windows SafeNet
/w/bioimaging_and_optics_platform_biop/computers-servers/safenet/
Feb 18 2020, 11:34
Edited by oburri
ijm-DetectSpots-VoronoiFromNuclei-FISH
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijm-detectspots-voronoifromnuclei/
Nov 21 2019, 15:27
Edited by romainGuiet
Howto Create owl:Ontology From Python Classes and Convert Data To RDF
/w/der_sp%C3%A4te_nietzsche/data_collection_workflow_for_spn/py2ttl/
Apr 15 2020, 18:11
Edited by steinech
BIOP Basics ActionBar
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/biop-basics/
Nov 7 2019, 16:38
Edited by oburri
IHC Ratio Quantification
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijab-ihc-ratio/
Nov 7 2019, 14:37
Edited by oburri
How To Merge Faksimile SVG Files With XML
/w/der_sp%C3%A4te_nietzsche/data_collection_workflow_for_spn/how_to_merge_faksimile_svg_files_with_xml/
Nov 5 2019, 11:29
Edited by steinech
How To Extract Information From SVG Text Files
/w/der_sp%C3%A4te_nietzsche/data_collection_workflow_for_spn/how_to_extract_information_from_svg_text_files/
Oct 18 2019, 17:22
Edited by steinech
How To Convert KGW IX Manuscript PDF To SVG Text Files
/w/der_sp%C3%A4te_nietzsche/data_collection_workflow_for_spn/how_to_convert_kgw_ix_manuscript_pdf_to_svg_files/
Oct 18 2019, 17:27
Edited by steinech
Data Collection Workflow For SpN
/w/der_sp%C3%A4te_nietzsche/data_collection_workflow_for_spn/
Nov 11 2019, 09:07
Edited by steinech
BIOP Utils For QuPath
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/biop-utils/
Sep 27 2019, 13:03
Edited by oburri
ijp-Kheops
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijp-kheops/
Mar 21 2022, 15:08
Edited by chiarutt
Swiss Microscopy Core-Facility Day 2019
/w/bioimaging_and_optics_platform_biop/workshops/smcf-day2019/
Aug 29 2019, 08:21
Edited by chiarutt
Learnathon2019
/w/bioimaging_and_optics_platform_biop/image-processing/learnathon2019/
Jun 25 2019, 09:19
Edited by oburri
Biop-2019-ij-project
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/biop-2019-ij-project/
Jun 24 2019, 11:59
Edited by oburri
Wacom Tablet troubleshooting - Pink Panther
/w/bioimaging_and_optics_platform_biop/computers-servers/wacom/
May 23 2019, 09:38
Edited by chiarutt
Cell Profiler
/w/bioimaging_and_optics_platform_biop/microscopy/operetta/cellprofiler/
May 9 2019, 16:29
Edited by romainGuiet
Der Späte Nietzsche
/w/der_sp%C3%A4te_nietzsche/
Oct 18 2019, 11:35
Edited by steinech
Assessing Bleach
/w/bioimaging_and_optics_platform_biop/teaching/assess-bleach/
Wed, Jan 25, 10:59
Edited by oburri
R-studio
/w/bioimaging_and_optics_platform_biop/computers-servers/software/r-studio/
Jun 20 2019, 08:24
Edited by oburri
FRAP analysis
/w/bioimaging_and_optics_platform_biop/teaching/frap-analysis/
Oct 26 2021, 10:24
Edited by oburri
QuPath Bugs & Errors
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/bugs-errors/
Jan 18 2019, 11:01
Edited by oburri
2019 Week 1 (Early January)
/w/c4science/changelog/20190105/
Apr 16 2019, 10:05
Edited by aubort
Processing & Analysis Scripts for QuPath
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/processing-analysis/
Oct 26 2021, 10:36
Edited by oburri
ijm-FWHM
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijm-fwhm/
Nov 28 2018, 12:36
Edited by romainGuiet
Creating 3D Printing File
/w/bioimaging_and_optics_platform_biop/image-processing/creating_3dprinting/
Nov 20 2018, 14:17
Edited by romainGuiet
Tips & Tricks
/w/c4science/tips/
Dec 9 2019, 17:18
Edited by aubort
File
/w/c4science/file/
Oct 18 2018, 15:14
Edited by aubort
Micro-pump SP8
/w/bioimaging_and_optics_platform_biop/microscopy/micro-pompe_sp8/
Sep 20 2022, 11:06
Edited by chiarutt
SCITAS Cluster Processing
/w/bioimaging_and_optics_platform_biop/image-processing/cluster-processing/
Oct 26 2021, 10:35
Edited by oburri
Deep Learning
/w/bioimaging_and_optics_platform_biop/image-processing/machine-learning/deep-learning/
Feb 26 2019, 09:01
Edited by romainGuiet
Machine Learning
/w/bioimaging_and_optics_platform_biop/image-processing/machine-learning/
Oct 30 2019, 09:00
Edited by oburri
BIOP VSI Reader
/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijab-biop_vsireader/
May 2 2019, 10:30
Edited by oburri
PSF - Point Spread Function
/w/bioimaging_and_optics_platform_biop/microscopy/psf/
Aug 21 2018, 08:34
Edited by romainGuiet
Workshops
/w/bioimaging_and_optics_platform_biop/workshops/
Aug 10 2018, 13:28
Edited by oburri
Create an account
/w/c4science/create_an_account/
Aug 6 2018, 13:45
Edited by aubort
Code Licensing
/w/bioimaging_and_optics_platform_biop/image-processing/licensing/
Aug 23 2022, 09:40
Edited by oburri
Symphotime
/w/bioimaging_and_optics_platform_biop/computers-servers/software/symphotime/
Nov 20 2018, 16:11
Edited by chiarutt
Oncilla - Tools for Maintenance
/w/oncilla/aux-tools/
May 8 2018, 15:06
Edited by tuleu
Oncilla - Recommended Transport Case
/w/oncilla/aux-transport-case/
May 8 2018, 15:04
Edited by tuleu
Oncilla - Electronic Programmer
/w/oncilla/aux-programmer/
May 8 2018, 15:01
Edited by tuleu
Oncilla - Recommanded Power Supply
/w/oncilla/aux-power-supply/
May 8 2018, 15:00
Edited by tuleu
Oncilla - Wireless Connection Guide
/w/oncilla/wireless-connection/
May 8 2018, 14:58
Edited by tuleu
Oncilla - Hardware Troobleshooting
/w/oncilla/troobleshooting/
May 8 2018, 14:54
Edited by tuleu
Oncilla - Software Utilities for Hardware Management
/w/oncilla/software-tools/
May 8 2018, 14:36
Edited by tuleu
Oncilla - Calibration Procedures
/w/oncilla/calibration/
May 8 2018, 14:48
Edited by tuleu
Oncilla - Startup Instructions
/w/oncilla/startup/
May 8 2018, 13:48
Edited by tuleu
Oncilla - SBCP
/w/oncilla/sbcp/
May 8 2018, 13:44
Edited by tuleu
Oncilla - Start Up Checklist
/w/oncilla/checklist/
May 8 2018, 13:37
Edited by tuleu
Oncilla - Joint Units and Limits
/w/oncilla/joint-units/
May 8 2018, 13:30
Edited by tuleu
Oncilla - Part Description
/w/oncilla/part-description/
May 8 2018, 13:27
Edited by tuleu
Oncilla - Hardware Overview
/w/oncilla/hw-overview/
May 8 2018, 15:13
Edited by tuleu
Oncilla Wiki
/w/oncilla/
May 8 2018, 15:16
Edited by tuleu
Scripting Reference
/w/bioimaging_and_optics_platform_biop/image-processing/qupath/scripting-reference/
Apr 22 2018, 18:22
Edited by oburri

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