Phriction Projects Wikis Bioimaging And Optics Platform Image Processing ImageJ/Fiji ijp-Kheops History Version 10 vs 11
Version 10 vs 11
Version 10 vs 11
Edits
Edits
- Edit by romainGuiet, Version 11
- Oct 15 2019 16:07
- Edit by romainGuiet, Version 10
- Oct 15 2019 15:25
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Content Changes
Content Changes
(IMPORTANT) **Kheops **is an ImageJ plugin (IJ2 command based) to **convert image file(s) to pyramidal ome.tiff**.
{F12283776, size=full}
= Install =
Please install using the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/update-site/ | BIOP dev update site ]].
== Sources ==
([[ https://c4science.ch/source/ijp-kheops/ | c4science repo ]]).
= On a single file =
{F12284299, size=full}
**Read Kheops Documentation**
Button to arrive on this page.
**Select an input file (required)**
Selec the file you want to convert to a pyramidal ome.tiff
**Specify an output folder (optional)**
By default, it will save the ome.tiff in the same fodler
**Pyramid level(s)**
To specify how many downsampling levels of the image will be created.
**Pyramid level downsampling factor**
To specify the downsampling factor to use between levels.
**Individual Tile size (in pixel)**
To specify the size of the tiles
== On multiple files (Batch Mode) ==
1. Use the //Search// tool
{F12066824, size = full}
2. Search for Kheops
{F12066829, size = full}
3.Clic {key Batch }
4.Select images
{F12066833, size = full}
5.Clic {key Open}
(IMPORTANT) **Kheops **is an ImageJ plugin (IJ2 command based) to **convert image file(s) to pyramidal ome.tiff**.
{F12283776, size=full}
= Kheops - Read Documentation =
Brings you on this page.
= =
= Install =
Please install using the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/update-site/ | BIOP dev update site ]].
== Sources ==
([[ https://c4science.ch/source/ijp-kheops/ | c4science repo ]]).
= On a single file =
{F12284299, size=full}
**Select an input file (required)**
Selec the file you want to convert to a pyramidal ome.tiff
**Specify an output folder (optional)**
By default, it will save the ome.tiff in the same fodler
**Pyramid level(s)**
To specify how many downsampling levels of the image will be created.
**Pyramid level downsampling factor**
To specify the downsampling factor to use between levels.
**Individual Tile size (in pixel)**
To specify the size of the tiles
== On multiple files (Batch Mode) ==
1. Use the //Search// tool
{F12066824, size = full}
2. Search for Kheops
{F12284765, size = full}
3.Clic {key Batch }
4.Select images
{F12066833, size = full}
5.Clic {key Open}
(IMPORTANT) **Kheops **is an ImageJ plugin (IJ2 command based) to **convert image file(s) to pyramidal ome.tiff**.
{F12283776, size=full}
= Kheops - Read Documentation =
Brings you on this page.
= =
= Install =
Please install using the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/update-site/ | BIOP dev update site ]].
== Sources ==
([[ https://c4science.ch/source/ijp-kheops/ | c4science repo ]]).
= On a single file =
{F12284299, size=full}
**Read Kheops Documentation**
Button to arrive on this page.
**Select an input file (required)**
Selec the file you want to convert to a pyramidal ome.tiff
**Specify an output folder (optional)**
By default, it will save the ome.tiff in the same fodler
**Pyramid level(s)**
To specify how many downsampling levels of the image will be created.
**Pyramid level downsampling factor**
To specify the downsampling factor to use between levels.
**Individual Tile size (in pixel)**
To specify the size of the tiles
== On multiple files (Batch Mode) ==
1. Use the //Search// tool
{F12066824, size = full}
2. Search for Kheops
{F12066829284765, size = full}
3.Clic {key Batch }
4.Select images
{F12066833, size = full}
5.Clic {key Open}
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