Phriction Projects Wikis Bioimaging And Optics Platform Image Processing ImageJ/Fiji ijp-Kheops History Version 9 vs 13
Version 9 vs 13
Version 9 vs 13
Edits
Edits
- Edit by chiarutt, Version 13
- Mar 21 2022 15:08
- Edit by romainGuiet, Version 9
- Oct 15 2019 11:19
Edit Older Version 9... | Edit Current Version 13... |
Content Changes
Content Changes
IMPORTANT: **Kheops **is a ImageJ plugin (IJ2 command based) to **convert image file(s) to pyramidal ome.tiff**.
{F12283776, size=full}
= Install =
Please install using the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/update-site/ | BIOP dev update site ]].
== Sources ==
([[ https://c4science.ch/source/ijp-kheops/ | c4science repo ]]).
= On a single file =
{F12066812, size=full}
**Read Kheops Documentation**
Button to arrive on this page.
**Select an input file (required)**
Selec the file you want to convert to a pyramidal ome.tiff
**Specify an output folder (optional)**
By default, it will save the ome.tiff in the same fodler
**Pyramid level(s)**
To specify how many downsampling levels of the image will be created.
**Pyramid level downsampling factor**
To specify the downsampling factor to use between levels.
**Individual Tile size (in pixel)**
To specify the size of the tiles
== On multiple files (Batch Mode) ==
1. Use the //Search// tool
{F12066824, size = full}
2. Search for Kheops
{F12066829, size = full}
3.Clic {key Batch }
4.Select images
{F12066833, size = full}
5.Clic {key Open}
Look at the documentation on github: https://github.com/BIOP/ijp-kheops
IMPORTANT: **Kheops **is a ImageJ plugin (IJ2 command based) to **convert image file(s) to pyramidal ome.tiff**.
{F12283776, size=full}
= Install =
Please install using the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/update-site/ | BIOP dev update site ]].
== Sources ==
([[ https://c4science.ch/source/ijp-kheops/ | c4science repo ]]).
= On a single file =
{F12066812, size=full}
**Read Kheops Documentation**
Button to arrive on this page.
**Select an input file (required)**
Selec the file you want to convert to a pyramidal ome.tiff
**Specify an output folder (optional)**
By default, it will save the ome.tiff in the same fodler
**Pyramid level(s)**
To specify how many downsampling levels of the image will be created.
**Pyramid level downsampling factor**
To specify the downsampling factor to use between levels.
**Individual Tile size (in pixel)**
To specify the size of the tiles
== On multiple files (Batch Mode) ==
1. Use the //Search// tool
{F12066824, size = full}
2. Search for Kheops
{F12066829, size = full}
3.Clic {key Batch }
4.Select images
{F12066833, size = full}
5.Clic {key Open}Look at the documentation on github: https://github.com/BIOP/ijp-kheops
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