Phriction Projects Wikis Bioimaging And Optics Platform Computers & Servers at the BIOP Sharing Data History Version 3 vs 4
Version 3 vs 4
Version 3 vs 4
Edits
Edits
- Edit by romainGuiet, Version 4
- Nov 6 2020 08:51
- Edit by romainGuiet, Version 3
- Nov 6 2020 08:40
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Content Changes
Content Changes
= Sharing Data of a Publication =
| Platform | Size Limit per Dataset| Increase the limit | Preview of Files | Example |
| [[ https://zenodo.org/ | ZENODO]]| 50 Go | contact them | Preview of pdf files | [[ https://zenodo.org/record/4058414#.X6PcBkeSmUk | DEVILS dataset ]] |
| [[ https://figshare.com/ | figshare]] | 20 Go | contact them | ? | ? |
| idr | ? | ? | images can be explored via Omero| [[ https://idr.openmicroscopy.org/search/?query=Name:idr0061 | Time-lapse ]] from [[https://www.nature.com/articles/s41467-019-10446-z#MOESM4 | Wolf et al. 2019 ]] |
== Zenodo ==
{F15524715, size=full}
== IDR ==
{F15524836,size=full}
explore the dataset online
{F15524851,size=full}
= Sharing Data before publication =
(IMPORTANT) BIOP is recommending you to make public your dataset (or at least a part of it), with the script(s) and a brief description of the Image Processing and Analysis workflow. To doso several platforms exist, please check the //"non-exhaustive//" list below and do not hesitate to [[ https://www.epfl.ch/research/facilities/ptbiop/staff/ | contact us ]].
= Sharing Data of a Publication =
| Platform | Size Limit per Dataset| Increase the limit | Preview of Files | Example | Conditions in brief |
| [[ https://zenodo.org/ | ZENODO]]| 50 Go | contact them | Preview of pdf files | [[ https://zenodo.org/record/4058414#.X6PcBkeSmUk | DEVILS dataset ]] | |
| [[ https://figshare.com/ | figshare]] | 20 Go | with fees | ? | ? | |
| [[ https://idr.openmicroscopy.org/ | idr ]]| 1000Go | contact them | images can be explored via Omero| [[ https://idr.openmicroscopy.org/search/?query=Name:idr0061 | Time-lapse ]] from [[https://www.nature.com/articles/s41467-019-10446-z#MOESM4 | Wolf et al. 2019 ]] | Complete datasets - not just images supporting one figure in the publication , preferably CC-BY licence , [[ https://idr.openmicroscopy.org/about/submission.html | see more about submission]]|
== Zenodo ==
{F15524715, size=full}
== IDR ==
{F15524836,size=full}
explore the dataset online
{F15524851,size=full}
= Sharing Data before publication =
(IMPORTANT) BIOP is recommending you to make public your dataset (or at least a part of it), with the script(s) and a brief description of the Image Processing and Analysis workflow. To doso several platforms exist, please check the //"non-exhaustive//" list below and do not hesitate to [[ https://www.epfl.ch/research/facilities/ptbiop/staff/ | contact us ]].
= Sharing Data of a Publication =
| Platform | Size Limit per Dataset| Increase the limit | Preview of Files | Example | Conditions in brief |
| [[ https://zenodo.org/ | ZENODO]]| 50 Go | contact them | Preview of pdf files | [[ https://zenodo.org/record/4058414#.X6PcBkeSmUk | DEVILS dataset ]] | |
| [[ https://figshare.com/ | figshare]] | 20 Go | contact them |with fees | ? | ? | |
| idr | ? | ?| [[ https://idr.openmicroscopy.org/ | idr ]]| 1000Go | contact them | images can be explored via Omero| [[ https://idr.openmicroscopy.org/search/?query=Name:idr0061 | Time-lapse ]] from [[https://www.nature.com/articles/s41467-019-10446-z#MOESM4 | Wolf et al. 2019 ]] | Complete datasets - not just images supporting one figure in the publication , preferably CC-BY licence , 2019 ]] |[[ https://idr.openmicroscopy.org/about/submission.html | see more about submission]]|
== Zenodo ==
{F15524715, size=full}
== IDR ==
{F15524836,size=full}
explore the dataset online
{F15524851,size=full}
= Sharing Data before publication =
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