Phriction Projects Wikis Bioimaging And Optics Platform Image Processing OMERO Importing (and downloading) images History Version 6 vs 7
Version 6 vs 7
Version 6 vs 7
Content Changes
Content Changes
= OMERO.insight =
Although images can be viewed from anywhere using the webclient ([[ https://omero.epfl.ch/webclient/ | omero.epfl.ch ]]), a desktop client (OMERO.insight) is required to import images to OMERO.
=== Importing images directly from the BIOP microscopes ===
The OMERO.insight client has been installed and configured on most of the BIOP's microscope computers. It can be accessed via the `EPFL - OMERO` desktop shortcut, which is available for every EPFL users. Enter your gaspar credentials to log in.
Here is the complete list of BIOP microscopes equipped with the OMERO.insight client:
|CF05 - Zeiss LSM 710|
|CF10 - Visitron CSU-W1|
|CF13 - Leica SP8 FLIM|
|CF14 - Leica SP8 STED 3X|
|CF15 - Leica SP8 Upright I|
|CF16 - Leica SP8 Upright II|
|CF17 - Leica SP8 Inverted I|
|CF18 - Nikon CSU-W1|
|WF01 - Leica DM5500|
|WF09 - Nikon SIM/STORM|
|WF12 - ZEISS Lightsheet Z1|
|WF10 - Olympus Slide Scanner 1|
|WF13 - Olympus Slide Scanner 2|
|WF15 - Operetta CLS|
=== Importing images with your own computer ===
- OMERO.insight installation
First, you need to find the [[ https://www.openmicroscopy.org/omero/downloads/ | omero desktop client]] compatible with your Operating System (OS), either Windows, Mac OS X, Linux.
{F17940836}
After the installation, please follow the simple steps below:
- START OMERO.insight
{F17940867}
- Define the server adress
In the login dialog, click on the wrench icon. This will open a list of servers to which you can connect. By default, only “localhost” is listed. Click on the plus icon to add a new line to the list and type `omero.epfl.ch` into the line.
{F17940907}
- Enter your gaspar credentials
// The first time you login, please clic on the lock to close it //
{F7111871}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
= OMERO.insight =
Although images can be viewed from anywhere using the webclient ([[ https://omero.epfl.ch/webclient/ | omero.epfl.ch ]]), a desktop client (OMERO.insight) is required to import images to OMERO.
=== Importing images directly from the BIOP microscopes ===
The OMERO.insight client has been installed and configured on most of the BIOP's microscope computers. It can be accessed via the `EPFL - OMERO` desktop shortcut, which is available for every EPFL users. Enter your gaspar credentials to log in.
Here is the complete list of BIOP microscopes equipped with the OMERO.insight client:
|CF05 - Zeiss LSM 710|
|CF10 - Visitron CSU-W1|
|CF13 - Leica SP8 FLIM|
|CF14 - Leica SP8 STED 3X|
|CF15 - Leica SP8 Upright I|
|CF16 - Leica SP8 Upright II|
|CF17 - Leica SP8 Inverted I|
|CF18 - Nikon CSU-W1|
|WF01 - Leica DM5500|
|WF09 - Nikon SIM/STORM|
|WF12 - ZEISS Lightsheet Z1|
|WF10 - Olympus Slide Scanner 1|
|WF13 - Olympus Slide Scanner 2|
|WF15 - Operetta CLS|
=== Importing images with your own computer ===
- **OMERO.insight installation**
First, you need to find the [[ https://www.openmicroscopy.org/omero/downloads/ | omero desktop client]] compatible with your Operating System (OS), either Windows, Mac OS X, Linux.
{F17940836, size=full}
After the installation, please follow the simple steps below:
- **START OMERO.insight**
{F17940867, height=300}
- **Define the server adress**
In the login dialog, click on the wrench icon. This will open a list of servers to which you can connect. By default, only “localhost” is listed. Click on the plus icon to add a new line to the list and type `omero.epfl.ch` into the line.
{F17940907, height=300}
- **Enter your gaspar credentials**
// The first time you login, please clic on the lock to close it //
{F7111871, height=300}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
= OMERO.insight =
Although images can be viewed from anywhere using the webclient ([[ https://omero.epfl.ch/webclient/ | omero.epfl.ch ]]), a desktop client (OMERO.insight) is required to import images to OMERO.
=== Importing images directly from the BIOP microscopes ===
The OMERO.insight client has been installed and configured on most of the BIOP's microscope computers. It can be accessed via the `EPFL - OMERO` desktop shortcut, which is available for every EPFL users. Enter your gaspar credentials to log in.
Here is the complete list of BIOP microscopes equipped with the OMERO.insight client:
|CF05 - Zeiss LSM 710|
|CF10 - Visitron CSU-W1|
|CF13 - Leica SP8 FLIM|
|CF14 - Leica SP8 STED 3X|
|CF15 - Leica SP8 Upright I|
|CF16 - Leica SP8 Upright II|
|CF17 - Leica SP8 Inverted I|
|CF18 - Nikon CSU-W1|
|WF01 - Leica DM5500|
|WF09 - Nikon SIM/STORM|
|WF12 - ZEISS Lightsheet Z1|
|WF10 - Olympus Slide Scanner 1|
|WF13 - Olympus Slide Scanner 2|
|WF15 - Operetta CLS|
=== Importing images with your own computer ===
- - **OMERO.insight installation**
First, you need to find the [[ https://www.openmicroscopy.org/omero/downloads/ | omero desktop client]] compatible with your Operating System (OS), either Windows, Mac OS X, Linux.
{F17940836, size=full}
After the installation, please follow the simple steps below:
- - **START OMERO.insight**
{F17940867}
, height=300}
- - **Define the server adress**
In the login dialog, click on the wrench icon. This will open a list of servers to which you can connect. By default, only “localhost” is listed. Click on the plus icon to add a new line to the list and type `omero.epfl.ch` into the line.
{F17940907, height=300}
- - **Enter your gaspar credentials**
// The first time you login, please clic on the lock to close it //
{F7111871}, height=300}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
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