We will explain here 2 use cases: You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio You want to set up an Rstudio project on c4science from scratch # You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio. While working on Rstudio on your files, associate your work with a project with the New Project dialog: File -> New project Existing directory Choose the directory (if you launched Rstudio from it it should be already there) and Create project. This, in pracctice, will create an .Rproj file and modify your .gitignore (check it out with git diff .gitignore) The system is smart enough to detect if you are using Git. On the bar, you should see a small "Git" icon. From the Git icon, you can do all the common Git operations you would do on the command line. Committing: If you choose Git -> commit..., you will be presented with the "Review Changes" panel, which is pretty straightforward. Tou tick the files you want to "Add", add a commit message and click commit. Once this is done, you can click on "Push". # Setting up from scratch

We will explain here 2 use cases: - [[ https://c4science.ch/w/c4science/rstudio/#you-use-r-or-rstudio-but | You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio ]] - [[ https://c4science.ch/w/c4science/rstudio/#setting-up-from-scratch | You want to set up an Rstudio project on c4science from scratch ]] - [[ https://c4science.ch/w/c4science/rstudio/#clone-a-repository-from | Clone a repository on c4science from within Rstudio ]] [[ https://c4science.ch/w/c4science/sshkeys/ | Both use cases need SSH keys to be already set up. ]] # You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio. While working on Rstudio on your files, associate your work with a project with the New Project dialog: `File -> New project` and choose `Existing directory` Choose the directory (if you launched Rstudio from it it should be already there) and `Create project`. This, in pracctice, will create an .Rproj file and modify your .gitignore (check it out with git diff .gitignore) The system is smart enough to detect if you are using Git. On the bar, you should see a small "Git" icon. {F230285} From the Git icon, you can do all the common Git operations you would do on the command line. ### Committing If you choose `Git -> commit...`, you will be presented with the "Review Changes" panel, which is pretty straightforward. You tick the files you want to "Add", add a commit message and click commit. Once this is done, you can click on "Push". # Setting up from scratch [[ https://c4science.ch/w/c4science/simplerepo/ | You first need to create a repository on C4science]]. From within Rstudio, you create a new project with `File -> New Project`, choose `New directory`. You then have to pick the type of Project (standard, package, shiny). If you are familiar with R, you'll know what to choose. If you're not, choose `Empty Project`. Choose a directory name etc and tick the `Create a git repository` box. What you have done here included a `git init` on the Rproject folder. You should now see a Git symbol on the toolbar. {F230285} You can now work on your files and commit, but you need to add an origin to be able to push to c4science: from Rstudio, lauch a shell via `Tools -> Shell` and type the following: ``` git config --global user.email "YOUR@EMAIL" git config --global user.name "C4SCIENCE_USERNAME" git remote add origin ssh://git@c4science.ch/diffusion/997/simplegitrepo.git git push --set-upstream origin master ``` Change the email and the username to yours and `ssh://` URL to whatever is your repo's URL. Now you can push your commits to C4science. # Clone a repository from c4science In RStudio, click `New project` as normal. Choose `Version Control`. Then, pick Git or SVN. Then, enter the repo data. Rstudio will clone the project into the chosen directory and, if needed, create an `.Rproj` file. You're now good to go with Rstudio and c4science. You can use the Git menu and commit + push from within Rstudio.

We will explain here 2 use cases: - [[ https://c4science.ch/w/c4science/rstudio/#you-use-r-or-rstudio-but | You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio ]] - [[ https://c4science.ch/w/c4science/rstudio/#setting-up-from-scratch | You want to set up an Rstudio project on c4science from scratch ]] - [[ https://c4science.ch/w/c4science/rstudio/#clone-a-repository-from | Clone a repository on c4science from within Rstudio ]] [[ https://c4science.ch/w/c4science/sshkeys/ | Both use cases need SSH keys to be already set up. ]] # You use R or Rstudio but no projects, you are already versioning your work but no integration from within Rstudio. While working on Rstudio on your files, associate your work with a project with the New Project dialog: `File -> New project` File -> New project Existing directoryand choose `Existing directory` Choose the directory (if you launched Rstudio from it it should be already there) and `Create project`. This, in pracctice, will create an .Rproj file and modify your .gitignore (check it out with git diff .gitignore) Choose the directory (if you launched Rstudio from it it should be already there) and Create project. This,The system is smart enough to detect if you are using Git. in praccticeOn the bar, will create an .Rproj file and modify your .gitignore (check it out with git diff .gitignore)you should see a small "Git" icon. The system is smart enough to detect if you are using Git. On the bar, you should see a small "Git" icon.{F230285} From the Git icon, you can do all the common Git operations you would do on the command line. ### Committing: If you choose `Git -> commit...`, you will be presented with the "Review Changes" panel, which is pretty straightforward. TouYou tick the files you want to "Add", add a commit message and click commit. Once this is done, you can click on "Push". # Setting up from scratch [[ https://c4science.ch/w/c4science/simplerepo/ | You first need to create a repository on C4science]]. From within Rstudio, you create a new project with `File -> New Project`, choose `New directory`. You then have to pick the type of Project (standard, package, shiny). If you are familiar with R, you'll know what to choose. If you're not, choose `Empty Project`. Choose a directory name etc and tick the `Create a git repository` box. What you have done here included a `git init` on the Rproject folder. You should now see a Git symbol on the toolbar. {F230285} You can now work on your files and commit, but you need to add an origin to be able to push to c4science: from Rstudio, lauch a shell via `Tools -> Shell` and type the following: ``` git config --global user.email "YOUR@EMAIL" git config --global user.name "C4SCIENCE_USERNAME" git remote add origin ssh://git@c4science.ch/diffusion/997/simplegitrepo.git git push --set-upstream origin master ``` Change the email and the username to yours and `ssh://` URL to whatever is your repo's URL. Now you can push your commits to C4science. # Clone a repository from c4science In RStudio, click `New project` as normal. Choose `Version Control`. Then, pick Git or SVN. Then, enter the repo data. Rstudio will clone the project into the chosen directory and, if needed, create an `.Rproj` file. You're now good to go with Rstudio and c4science. You can use the Git menu and commit + push from within Rstudio.