Phriction Projects Wikis Bioimaging And Optics Platform Computers & Servers at the BIOP Software History Version 13 vs 14
Version 13 vs 14
Version 13 vs 14
Content Changes
Content Changes
All our Documented Software is in the below hierarchy.
== Software Installed on BIOP PCs ==
| Software | Link
| ---------- | ---- |
| Arivis | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Arivis Vision4D`
| BIOP User Tracker | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\BIOP User Tracker\Current`
| CellProfiler | https://cellprofiler.org/releases and https://cellprofileranalyst.org/releases
| Fiji | https://fiji.sc/
| Handbrake | https://handbrake.fr/downloads.php
| Harmony | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Harmony`
| Imaris | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Imaris`
| LAS X | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Leica LAS`
| Matlab | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Matlab`
| Miniconda | https://docs.conda.io/en/latest/miniconda.html **Get Python3 x64**
| Putty | https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html
| QuPath | https://qupath.github.io/
| R Studio | https://rstudio.com/products/rstudio/download/ and https://stat.ethz.ch/CRAN/
| ZEN | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Zeiss ZEN`
For Fiji and QuPath, you can use the install script in the following repo: https://github.com/BIOP/biop-bash-scripts
All our Documented Software is in the below hierarchy.
== Software Installed on BIOP PCs ==
| Software | Link
| ---------- | ---- |
| Arivis | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Arivis Vision4D`
| BIOP User Tracker | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\BIOP User Tracker\Current`
| CellProfiler | https://cellprofiler.org/releases and https://cellprofileranalyst.org/releases
| Fiji | https://fiji.sc/
| Handbrake | https://handbrake.fr/downloads.php
| Harmony | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Harmony`
| Imaris | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Imaris`
| LAS X | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Leica LAS`
| Matlab | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Matlab`
| Miniconda | https://docs.conda.io/en/latest/miniconda.html **Get Python3 x64**
| Putty | https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html
| QuPath | https://qupath.github.io/
| R Studio | https://rstudio.com/products/rstudio/download/ and https://stat.ethz.ch/CRAN/
| ZEN | `\\svfas6.epfl.ch\biop\biop\Informatics\Software Library\Zeiss ZEN`
For Fiji and QuPath, you can use the install script in the following repo: https://github.com/BIOP/biop-bash-scripts
c4science · Help