Phriction Projects Wikis Bioimaging And Optics Platform Image Processing ImageJ/Fiji Fiji Update Site History Version 1 vs 7
Version 1 vs 7
Version 1 vs 7
Edits
Edits
- Edit by romainGuiet, Version 7
- Mar 12 2021 16:25
- Move Here by romainGuiet, Version 1
- Aug 9 2017 14:18
Edit Older Version 1... | Edit Current Version 7... |
Content Changes
Content Changes
= Rationale =
In order to simplify the installation and update of our plugins and macros to our end users, Oli has set up an Update Site for Fiji that is hosted by the BIOP website
= Initial Configuration for Uploader =
To be able to upload to our Update Site, we need to configure the Fiji Updater as follows
Go to {nav Help > Update > Manage Update Sites} and locate the **PTBIOP** line
{F1430548, width=500}
Fill the columns
| Host | Directory on Host |
|------|----------------------|
|sftp://biop@biop.epfl.ch | /biop/Fiji Update/|
== Details ==
The `biop.epfl.ch` server is manged by the SV-IT department and is configured as follows:
SFTP only connection using the `biop` username.
When connected via SFTP, we access our website from the `/biop` folder.
Oli created the `Fiji-Update` folder and the very first time the update site was initialized through the Fiji Updater, fiji uploaded some configuration files.
= Uploading to PTBIOP Update Site =
To upload simply go to {nav Help > Update > Advanced Mode}
{F1430761, width=500}
Select the file you want to upload and on the **Status/Action** column select **Upload to PTBIOP** from the dropdown menu/
NOTE: If you cannot see the **Upload to PTBIOP** option, either you did not configure your Fiji properly as per above or that you have pending updates. **The updater will not upload until your Fiji is up to date**
{F1430913, width=500}
Hit {nav Apply Changes}
You will be prompted for the password
{F1430947, width=500}
{F1430980}
Afterwards you should be informed that your files was uploaded successfully
Share and Enjoy
= Activating our PTBIOP Fiji Update Site =
Our Macros and Plugins make strong use of [[http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start| ActionBar]] and sometimes [[ http://imagej.net/ImageScience | ImageScience ]]
In order to use it, you can go to {nav Help > Update...}
Select {nav Manage Update Sites} and locate the following sites from the list (Alphabelical order)
- **IBMP-CNRS** - ActionBar and others
- **ImageScience **- Laplacian Filter (It used to be bundled with Fiji, but no longer)
- **PTBIOP** - Our update site https://biop.epfl.ch/Fiji-Update/
**Check the box** on the left of each of these.
{F3883165, width=100%}
= Plugins in Development =
Use the button "Add update site", specify a name and the adress as below.
| **Name** | **URL** |
| BIOP-Dev | https://biop.epfl.ch/Fiji-Update-Dev/ |
= Rationale =
In order to simplify the installation and update of our plugins and macros to our end users, Oli has set up an Update Site for Fiji that is hosted by the BIOP website
= Initial Configuration for Uploader =
To be able to upload to our Update Site, we need to configure the Fiji Updater as follows
Go to {nav Help > Update > Manage Update Sites} and locate the **PTBIOP** line
{F1430548, width=500}Activating our PTBIOP Fiji Update Site =
Fill the columns
| Host | Directory on Host |
|------|----------------------|
|sftp://biop@biop.epfl.ch | /biop/Fiji Update/|Our Macros and Plugins make strong use of [[http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start| ActionBar]] and sometimes [[ http://imagej.net/ImageScience | ImageScience ]]
== Details ==In order to use it, you can go to {nav Help > Update...}
The `biop.epfl.ch` server is manged bySelect {nav Manage Update Sites} and locate the SV-IT department and is configured as follows:following sites from the list (Alphabelical order)
SFTP only conne- **IBMP-CNRS** - Action using the `biop` username.
When connected via SFTPBar and others
- **ImageScience **- Laplacian Filter (It used to be bundled with Fiji, we access our website from the `/biop` folder.but no longer)
Oli created the `Fiji-Update` folder and the very first time the update site was initialized through the Fiji Updater, fiji uploaded some configuration files.- **PTBIOP** - Our update site https://biop.epfl.ch/Fiji-Update/
= Uploading to PTBIOP Update Site =
To upload simply go to {nav Help > Update > Advanced Mode}
{F1430761, width=500}**Check the box** on the left of each of these.
Select the file you want to upload and on the **Status/Action** column select **Upload to PTBIOP** from the dropdown menu/{F3883165, width=100%}
NOTE: If you cannot see the **Upload to PTBIOP** option, either you did not configure your Fiji properly as per above or that you have pending updates. **The updater will not upload until your Fiji is up to date**= Plugins in Development =
{F1430913Use the button "Add update site", width=500}specify a name and the adress as below.
Hit {nav Apply Changes}
You will be prompted for the password | **Name** | **URL** |
{F1430947, width=500}
{F1430980}
Afterwards you should be informed that your files was uploaded successfully
Share and Enjoy| BIOP-Dev | https://biop.epfl.ch/Fiji-Update-Dev/ |
c4science · Help