content will be added here

content will be added here = BIOP IHC RatioQuanti= {F5906334, layout=right, float, size=full} == What is it ? == The action bar `BIOP IHC RatioQuanti` is a simple but versatile tool relying on : - [[ http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start | `Action Bar` ]] plugin - `BIOP library` - `Color Deconvolution` plugin == What does it ? == It's allow you to : - set a folder - open image and its associated ROIset (if existing). - Define (Save or Load) some Settings - Test the current setting on the current image (showing intermediate images to allow you to affine them) - Process the current image ,or folder. == Method == **//TBD//** = To Be Defined in the parameters. For the **Staining** component the macro applies to the RGB image a “Color Deconvolution” [ref color deconvolution] using the vector **//TBD//**, on the component image **//TBD//**, applies a Gaussian Blur (sigma = **//TBD//**) and thresholds it using **//TBD//** algorithm [ref autothreshold]. For the **Tissue** component, the macro converts the RGB image to the HSB color space, applies a Gaussian Blur (sigma = **//TBD//**) and generates a binary image (ie mask) by thresholding the **//TBD//** component using the **//TBD//** algorithm [ref autothreshold]. **NB:** If a ROIset is associated to the image the measurements are restricted to them. == Install == Please, use the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/imagej_tools/update-site/ | PTBIOP update site ]] to do the installation and keep up to date. == Use == == Settings== === Specify === {F5906433, size = full} === Save/Load === {F5906440, size = full} == Test === {F5906449, size = full} == Process == {F5906463, size = full} In cas Image has a ROIset {F5906468, size = full}

content will be added here = BIOP IHC RatioQuanti= {F5906334, layout=right, float, size=full} == What is it ? == The action bar `BIOP IHC RatioQuanti` is a simple but versatile tool relying on : - [[ http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start | `Action Bar` ]] plugin - `BIOP library` - `Color Deconvolution` plugin == What does it ? == It's allow you to : - set a folder - open image and its associated ROIset (if existing). - Define (Save or Load) some Settings - Test the current setting on the current image (showing intermediate images to allow you to affine them) - Process the current image ,or folder. == Method == **//TBD//** = To Be Defined in the parameters. For the **Staining** component the macro applies to the RGB image a “Color Deconvolution” [ref color deconvolution] using the vector **//TBD//**, on the component image **//TBD//**, applies a Gaussian Blur (sigma = **//TBD//**) and thresholds it using **//TBD//** algorithm [ref autothreshold]. For the **Tissue** component, the macro converts the RGB image to the HSB color space, applies a Gaussian Blur (sigma = **//TBD//**) and generates a binary image (ie mask) by thresholding the **//TBD//** component using the **//TBD//** algorithm [ref autothreshold]. **NB:** If a ROIset is associated to the image the measurements are restricted to them. == Install == Please, use the [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/imagej_tools/update-site/ | PTBIOP update site ]] to do the installation and keep up to date. == Use == == Settings== === Specify === {F5906433, size = full} === Save/Load === {F5906440, size = full} == Test === {F5906449, size = full} == Process == {F5906463, size = full} In cas Image has a ROIset {F5906468, size = full}