Phriction Projects Wikis Bioimaging And Optics Platform Image Processing OMERO History Version 17 vs 18
Version 17 vs 18
Version 17 vs 18
Content Changes
Content Changes
= USERs =
Please contact [[mailto:claire.stoffel@epfl.ch | Claire Stoffel]] for every OMERO-related questions.
= OMERO documentation =
The present OMERO documentation offers step-by-step instructions on how to get started with OMERO at EPFL. To go further and learn more about OMERO, we also recommend you to visit the [[https://omero-guides.readthedocs.io/en/latest/index.html | official OMERO guide]] that contains comprehensive instructions on how to use components of the OMERO platform.
= Getting started =
=== EPFL OMERO account creation ===
The EPFL OMERO server can be access at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/ ]].
(NOTE) All EPFL members can login by hiting the `login` button on the top-right corner, and entering their gaspar credentials. Your OMERO account is automatically created at the first connection. {F16653775}
{F16653820}
//EPFL Unit --> Create page for accreditations//
== OMERO.insight installation ==
= Visualize Images =
The EPFL OMERO server can be access at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/ ]] to visualize images
= To upload images =
== Install OMERO.insight==
First, you need to install [[ https://www.openmicroscopy.org/omero/downloads/ | omero client]] compatible with you Operating System (OS), either Windows, Mac OS X, Linux.
After the installation, you can follow the simple steps of this [[ http://help.openmicroscopy.org/importing-data-5.html | tutorial ]] or below.
== START OMERO.insight==
{F7109371}
== Define server adress==
{F7109375}
== Enter your credentials==
// The first time you login, please clic on the locker to close it //
{F7111871}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
= USERs =
Please contact [[mailto:claire.stoffel@epfl.ch | Claire Stoffel]] for every OMERO-related questions.
= OMERO documentation =
The present OMERO documentation offers step-by-step instructions on how to get started with OMERO at EPFL. To go further and learn more about OMERO, we also recommend you to visit the [[https://omero-guides.readthedocs.io/en/latest/index.html | official OMERO guide]] that contains comprehensive instructions on how to use components of the OMERO platform.
= Getting started =
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | EPFL OMERO account creation ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/data-upload/ | Importing data ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Viewing data ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Managing data ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Creating figures ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Sharing data ]] ===
= Visualize Images =
The EPFL OMERO server can be access at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/ ]] to visualize images
= To upload images =
== Install OMERO.insight==
First, you need to install [[ https://www.openmicroscopy.org/omero/downloads/ | omero client]] compatible with you Operating System (OS), either Windows, Mac OS X, Linux.
After the installation, you can follow the simple steps of this [[ http://help.openmicroscopy.org/importing-data-5.html | tutorial ]] or below.
== START OMERO.insight==
{F7109371}
== Define server adress==
{F7109375}
== Enter your credentials==
// The first time you login, please clic on the locker to close it //
{F7111871}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
= USERs =
Please contact [[mailto:claire.stoffel@epfl.ch | Claire Stoffel]] for every OMERO-related questions.
= OMERO documentation =
The present OMERO documentation offers step-by-step instructions on how to get started with OMERO at EPFL. To go further and learn more about OMERO, we also recommend you to visit the [[https://omero-guides.readthedocs.io/en/latest/index.html | official OMERO guide]] that contains comprehensive instructions on how to use components of the OMERO platform.
= Getting started =
=== EPFL OMERO account creation ===
The EPFL OMERO server can be access at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/ ]].
(NOTE) All EPFL members can login by hiting the `login` button on the top-right corner, and entering their gaspar credentials. Your OMERO account is automatically created at the first connection. {F16653775}
{F16653820}[[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | EPFL OMERO account creation ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/data-upload/ | Importing data ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Viewing data ]] ===
=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Managing data ]] ===
//EPFL Unit --> Create page for accreditations//=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation | Creating figures ]] ===
== OMERO.insight install=== [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/account-creation ==n | Sharing data ]] ===
= Visualize Images =
The EPFL OMERO server can be access at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/ ]] to visualize images
= To upload images =
== Install OMERO.insight==
First, you need to install [[ https://www.openmicroscopy.org/omero/downloads/ | omero client]] compatible with you Operating System (OS), either Windows, Mac OS X, Linux.
After the installation, you can follow the simple steps of this [[ http://help.openmicroscopy.org/importing-data-5.html | tutorial ]] or below.
== START OMERO.insight==
{F7109371}
== Define server adress==
{F7109375}
== Enter your credentials==
// The first time you login, please clic on the locker to close it //
{F7111871}
{F7111889}
== Create Project ==
Select your username and {nav Right-Clic > Create New >New Project ...}
{F7111898}
Specify name and press {key Create}
{F7111919}
Your project is created
{F7111908}
== Create Dataset==
Select a project and {nav Right-Clic > Create New >New Dataset...}
{F7111940}
Specify name and press {key Create}
{F7111951}
Dataset is created
== Import Images ==
Select a dataset and {nav Right-Clic > Import...}
{F7111960}
- Select Images, then Press {key >}
{F7111987}
- Project and Dataset should allready be correct and Press {key Add_to_the_Queue}
{F7112002}
- The list is updated , press {key Import}
{F7112017}
- Images are added to the dataset
{F7112297}
- Slider at the bottom to enlarge images
{F7112309}
- Double-clic on an thumbnail open a new window
{F7112323}
c4science · Help