Diffusion akantu 2494dc4e9df3

clang-tidy
2494dc4e9df3
Actions

Authored by richart on Sep 29 2020, 15:26.

Description

clang-tidy

readability-*, -readability-magic-numbers, -readability-redundant-access-specifiers
bugprone-*
modernize-*, -modernize-use-trailing-return-type*
modernize-use-auto
performance-*
mpi-*
openmp-*
const (GhostType|ElementType) & -> \1

changed empty to clear and clear to zero to match stl

Details

Committed

richart

Nov 13 2020, 18:25

Pushed

richart

Dec 4 2020, 16:16

Parents

rAKAce37131bcd4f: Modified visibility and headers in pybind interface

Branches

Unknown

Tags

Unknown

Event Timeline

richart committed rAKA2494dc4e9df3: clang-tidy (authored by richart).Nov 13 2020, 18:25

Changes (605)

				Path
	M			.clang-tidy
	M			doc/dev-doc/manual/fe_engine.rst
	M			doc/manual/manual-feengine.tex
	M			doc/manual/manual-solidmechanicsmodel.tex
	M			examples/io/dumper/dumpable_interface.cc
	M			examples/io/dumper/dumper_low_level.cc
	M			examples/new_material/local_material_damage.hh
	M			examples/new_material/local_material_damage_inline_impl.hh
	M			examples/structural_mechanics/bernoulli_beam_2_exemple.cc
	M			extra_packages/extra-materials/src/material_FE2/material_FE2.cc
	M			extra_packages/extra-materials/src/material_FE2/material_FE2.hh
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
	M			extra_packages/extra-materials/src/material_damage/material_brittle.hh
	M			extra_packages/extra-materials/src/material_damage/material_brittle_non_local.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative_non_local.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative_non_local_inline_impl.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_linear.hh
	M			extra_packages/extra-materials/src/material_damage/material_iterative_stiffness_reduction.cc
	M			extra_packages/extra-materials/src/material_damage/material_iterative_stiffness_reduction.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative_non_local.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_non_local.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
	M			extra_packages/extra-materials/src/material_damage/material_vreepeerlings.hh
	M			extra_packages/extra-materials/src/material_damage/material_vreepeerlings_non_local.hh
	M			extra_packages/extra-materials/src/material_extra_includes.hh
	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic.hh
	M			extra_packages/extra-materials/src/material_viscoelastic/material_stiffness_proportional.cc
	M			extra_packages/extra-materials/src/material_viscoelastic/material_stiffness_proportional.hh
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
	M			extra_packages/igfem/src/dumper_igfem_connectivity.hh
	M			extra_packages/igfem/src/dumper_igfem_element_iterator.hh
	M			extra_packages/igfem/src/dumper_igfem_elemental_field.hh
	M			extra_packages/igfem/src/dumper_igfem_generic_elemental_field.hh
	M			extra_packages/igfem/src/dumper_igfem_material_internal_field.hh
	M			extra_packages/igfem/src/dumper_igfem_quadrature_points_field.hh
	M			extra_packages/igfem/src/element_class_igfem.hh
	M			extra_packages/igfem/src/fe_engine_template_tmpl_igfem.hh
	M			extra_packages/igfem/src/igfem_enrichment.cc
	M			extra_packages/igfem/src/igfem_enrichment.hh
	M			extra_packages/igfem/src/igfem_helper.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
	M			extra_packages/igfem/src/material_igfem/igfem_internal_field.hh
	M			extra_packages/igfem/src/material_igfem/igfem_internal_field_tmpl.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_iterative_stiffness_reduction.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage_inline_impl.hh
	M			extra_packages/igfem/src/mesh_igfem_spherical_growing_gel.hh
	M			extra_packages/igfem/src/non_local_manager_igfem.cc
	M			extra_packages/igfem/src/non_local_manager_igfem.hh
	M			extra_packages/igfem/src/shape_igfem.cc
	M			extra_packages/igfem/src/shape_igfem.hh
	M			extra_packages/igfem/src/shape_igfem_inline_impl.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem_inline_impl.hh
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_transfer_internals.cc
	M			extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
	M			extra_packages/traction-at-split-node-contact/src/boundary_conditions/inclined_flat_dirichlet.hh
	M			extra_packages/traction-at-split-node-contact/src/boundary_conditions/spring_bc.hh
	M			extra_packages/traction-at-split-node-contact/src/common/parameter_reader.hh
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.hh
	M			extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
	M			extra_packages/traction-at-split-node-contact/src/functions/node_filter.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction.hh
	M			packages/cgal.cmake
	M			python/py_aka_array.hh
	M			python/py_aka_common.hh
	M			python/py_aka_error.hh
	M			python/py_akantu.cc
	M			python/py_akantu.hh
	M			python/py_boundary_conditions.hh
	M			python/py_dumpable.hh
	M			python/py_fe_engine.cc
	M			python/py_fe_engine.hh
	M			python/py_group_manager.hh
	M			python/py_heat_transfer_model.hh
	M			python/py_material.cc
	M			python/py_material.hh
	M			python/py_mesh.cc
	M			python/py_mesh.hh
	M			python/py_model.cc
	M			python/py_model.hh
	M			python/py_parser.hh
	M			python/py_solid_mechanics_model.hh
	M			python/py_solid_mechanics_model_cohesive.hh
	A			python/py_solver.cc
	A			python/py_solver.hh
	M			src/common/aka_array.cc
	M			src/common/aka_array.hh
	M			src/common/aka_array_printer.hh
	M			src/common/aka_array_tmpl.hh
	M			src/common/aka_bbox.hh
	M			src/common/aka_blas_lapack.hh
	M			src/common/aka_circular_array.hh
	M			src/common/aka_common.cc
	M			src/common/aka_common.hh
	M			src/common/aka_common_inline_impl.hh
	M			src/common/aka_config.hh.in
	M			src/common/aka_csr.hh
	M			src/common/aka_element_classes_info.hh.in
	M			src/common/aka_element_classes_info_inline_impl.hh
	M			src/common/aka_enum_macros.hh
	M			src/common/aka_error.cc
	M			src/common/aka_error.hh
	M			src/common/aka_event_handler_manager.hh
	M			src/common/aka_extern.cc
	M			src/common/aka_factory.hh
	M			src/common/aka_fwd.hh
	M			src/common/aka_grid_dynamic.hh
	M			src/common/aka_math.cc
	M			src/common/aka_math.hh
	M			src/common/aka_math_tmpl.hh
	M			src/common/aka_memory.cc
	M			src/common/aka_memory.hh
	M			src/common/aka_named_argument.hh
	M			src/common/aka_random_generator.hh
	M			src/common/aka_safe_enum.hh
	M			src/common/aka_static_memory.cc
	M			src/common/aka_static_memory.hh
	M			src/common/aka_static_memory_inline_impl.hh
	M			src/common/aka_typelist.hh
	M			src/common/aka_types.hh
	M			src/common/aka_visitor.hh
	M			src/common/aka_voigthelper.hh
	M			src/common/aka_voigthelper_tmpl.hh
	M			src/fe_engine/cohesive_element.hh
	M			src/fe_engine/element.hh
	M			src/fe_engine/element_class.hh
	M			src/fe_engine/element_class_structural.hh
	M			src/fe_engine/element_class_tmpl.hh
	M			src/fe_engine/element_classes/element_class_bernoulli_beam_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_hermite_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_quadrangle_8_inline_impl.hh
	M			src/fe_engine/element_type_conversion.hh
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_inline_impl.hh
	M			src/fe_engine/fe_engine_template.hh
	M			src/fe_engine/fe_engine_template_cohesive.cc
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/fe_engine_template_tmpl_struct.hh
	M			src/fe_engine/gauss_integration_tmpl.hh
	M			src/fe_engine/integration_point.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.hh
	M			src/fe_engine/interpolation_element_tmpl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.hh
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_functions_inline_impl.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_base_inline_impl.hh
	M			src/fe_engine/shape_lagrange_inline_impl.hh
	M			src/fe_engine/shape_structural.hh
	M			src/fe_engine/shape_structural_inline_impl.hh
	M			src/geometry/aabb_primitives/aabb_primitive.hh
	M			src/geometry/aabb_primitives/line_arc.hh
	M			src/geometry/aabb_primitives/tetrahedron.hh
	M			src/geometry/aabb_primitives/triangle.hh
	M			src/geometry/geom_helper_functions.hh
	M			src/geometry/mesh_abstract_intersector.hh
	M			src/geometry/mesh_abstract_intersector_tmpl.hh
	M			src/geometry/mesh_geom_abstract.hh
	M			src/geometry/mesh_geom_common.hh
	M			src/geometry/mesh_geom_factory.hh
	M			src/geometry/mesh_geom_factory_tmpl.hh
	M			src/geometry/mesh_geom_intersector.hh
	M			src/geometry/mesh_geom_intersector_tmpl.hh
	M			src/geometry/mesh_segment_intersector.hh
	M			src/geometry/mesh_segment_intersector_tmpl.hh
	M			src/geometry/mesh_sphere_intersector.hh
	M			src/geometry/mesh_sphere_intersector_tmpl.hh
	M			src/geometry/tree_type_helper.hh
	M			src/io/dumper/dumpable.cc
	M			src/io/dumper/dumpable.hh
	M			src/io/dumper/dumpable_dummy.hh
	M			src/io/dumper/dumpable_inline_impl.hh
	M			src/io/dumper/dumpable_iohelper.hh
	M			src/io/dumper/dumper_compute.hh
	M			src/io/dumper/dumper_element_iterator.hh
	M			src/io/dumper/dumper_elemental_field.hh
	M			src/io/dumper/dumper_field.hh
	M			src/io/dumper/dumper_filtered_connectivity.hh
	M			src/io/dumper/dumper_generic_elemental_field.hh
	M			src/io/dumper/dumper_generic_elemental_field_tmpl.hh
	M			src/io/dumper/dumper_homogenizing_field.hh
	M			src/io/dumper/dumper_internal_material_field.hh
	M			src/io/dumper/dumper_iohelper.cc
	M			src/io/dumper/dumper_iohelper.hh
	M			src/io/dumper/dumper_iohelper_paraview.cc
	M			src/io/dumper/dumper_iohelper_paraview.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/io/dumper/dumper_nodal_field.hh
	M			src/io/dumper/dumper_padding_helper.hh
	M			src/io/dumper/dumper_quadrature_point_iterator.hh
	M			src/io/dumper/dumper_text.cc
	M			src/io/dumper/dumper_text.hh
	M			src/io/dumper/dumper_type_traits.hh
	M			src/io/dumper/dumper_variable.hh
	M			src/io/mesh_io.cc
	M			src/io/mesh_io.hh
	M			src/io/mesh_io/mesh_io_diana.cc
	M			src/io/mesh_io/mesh_io_diana.hh
	M			src/io/mesh_io/mesh_io_msh.cc
	M			src/io/mesh_io/mesh_io_msh.hh
	M			src/io/mesh_io/mesh_io_msh_struct.cc
	M			src/io/mesh_io/mesh_io_msh_struct.hh
	M			src/io/parser/algebraic_parser.hh
	M			src/io/parser/cppargparse/cppargparse.cc
	M			src/io/parser/cppargparse/cppargparse.hh
	M			src/io/parser/cppargparse/cppargparse_tmpl.hh
	M			src/io/parser/input_file_parser.hh
	M			src/io/parser/parameter_registry.cc
	M			src/io/parser/parameter_registry.hh
	M			src/io/parser/parameter_registry_tmpl.hh
	M			src/io/parser/parsable.cc
	M			src/io/parser/parsable.hh
	M			src/io/parser/parser.cc
	M			src/io/parser/parser.hh
	M			src/io/parser/parser_tmpl.hh
	M			src/mesh/element_group.cc
	M			src/mesh/element_group.hh
	M			src/mesh/element_group_inline_impl.hh
	M			src/mesh/element_type_map.cc
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_filter.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/group_manager_inline_impl.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_accessor.hh
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_events.hh
	M			src/mesh/mesh_filter.hh
	M			src/mesh/mesh_global_data_updater.hh
	M			src/mesh/mesh_inline_impl.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.cc
	M			src/mesh/node_group.hh
	M			src/mesh/node_group_inline_impl.hh
	M			src/mesh_utils/cohesive_element_inserter.cc
	M			src/mesh_utils/cohesive_element_inserter.hh
	M			src/mesh_utils/cohesive_element_inserter_inline_impl.hh
	M			src/mesh_utils/global_ids_updater.cc
	M			src/mesh_utils/global_ids_updater.hh
	M			src/mesh_utils/global_ids_updater_inline_impl.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/mesh_utils/mesh_utils.hh
	M			src/mesh_utils/mesh_utils_distribution.cc
	M			src/mesh_utils/mesh_utils_distribution.hh
	M			src/mesh_utils/mesh_utils_inline_impl.hh
	M			src/mesh_utils/mesh_utils_pbc.cc
	M			src/model/common/boundary_condition/boundary_condition.hh
	M			src/model/common/boundary_condition/boundary_condition_functor.hh
	M			src/model/common/boundary_condition/boundary_condition_functor_inline_impl.hh
	M			src/model/common/boundary_condition/boundary_condition_tmpl.hh
	M			src/model/common/dof_manager/dof_manager.cc
	M			src/model/common/dof_manager/dof_manager.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	P			src/model/common/dof_manager/dof_manager_default_inline_impl.hh Copied to src/synchronizer/facet_synchronizer_inline_impl.hh
	M			src/model/common/dof_manager/dof_manager_inline_impl.hh
	M			src/model/common/dof_manager/dof_manager_petsc.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/integration_scheme/generalized_trapezoidal.cc
	M			src/model/common/integration_scheme/generalized_trapezoidal.hh
	M			src/model/common/integration_scheme/integration_scheme.cc
	M			src/model/common/integration_scheme/integration_scheme.hh
	M			src/model/common/integration_scheme/integration_scheme_1st_order.cc
	M			src/model/common/integration_scheme/integration_scheme_1st_order.hh
	M			src/model/common/integration_scheme/integration_scheme_2nd_order.hh
	M			src/model/common/integration_scheme/newmark-beta.cc
	M			src/model/common/integration_scheme/newmark-beta.hh
	M			src/model/common/integration_scheme/pseudo_time.cc
	M			src/model/common/integration_scheme/pseudo_time.hh
	M			src/model/common/model_solver.cc
	M			src/model/common/model_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver.cc
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_default.hh
	M			src/model/common/non_linear_solver/non_linear_solver_linear.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.hh
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	M			src/model/common/non_local_toolbox/base_weight_function.hh
	M			src/model/common/non_local_toolbox/base_weight_function_inline_impl.hh
	M			src/model/common/non_local_toolbox/neighborhood_base.cc
	M			src/model/common/non_local_toolbox/neighborhood_base.hh
	M			src/model/common/non_local_toolbox/neighborhood_base_inline_impl.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.hh
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_manager.hh
	M			src/model/common/non_local_toolbox/non_local_manager_callback.hh
	M			src/model/common/non_local_toolbox/non_local_manager_inline_impl.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
	M			src/model/common/solver_callback.hh
	M			src/model/common/time_step_solvers/time_step_solver.cc
	M			src/model/common/time_step_solvers/time_step_solver.hh
	M			src/model/common/time_step_solvers/time_step_solver_default.cc
	M			src/model/common/time_step_solvers/time_step_solver_default.hh
	M			src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	M			src/model/heat_transfer/heat_transfer_model_inline_impl.hh
	M			src/model/model.cc
	M			src/model/model.hh
	M			src/model/model_inline_impl.hh
	M			src/model/model_options.hh
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/material_inline_impl.hh
	M			src/model/solid_mechanics/material_selector.hh
	M			src/model/solid_mechanics/material_selector_tmpl.hh
	M			src/model/solid_mechanics/materials/internal_field.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	M			src/model/solid_mechanics/materials/material_core_includes.hh
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_non_local.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.cc
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.cc
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.hh
	M			src/model/solid_mechanics/materials/material_elastic.cc
	M			src/model/solid_mechanics/materials/material_elastic.hh
	M			src/model/solid_mechanics/materials/material_elastic_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_non_local.hh
	M			src/model/solid_mechanics/materials/material_non_local_tmpl.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
	M			src/model/solid_mechanics/materials/material_thermal.cc
	M			src/model/solid_mechanics/materials/material_thermal.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.cc
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
	M			src/model/solid_mechanics/materials/plane_stress_toolbox.hh
	M			src/model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
	M			src/model/solid_mechanics/materials/random_internal_field.hh
	M			src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
	M			src/model/solid_mechanics/materials/weight_functions/damaged_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
	M			src/model/solid_mechanics/solid_mechanics_model_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_mass.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/solid_mechanics/solid_mechanics_model_tmpl.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_2.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model.hh
	M			src/model/structural_mechanics/structural_mechanics_model_inline_impl.hh
	M			src/model/structural_mechanics/structural_mechanics_model_mass.cc
	M			src/solver/petsc_wrapper.hh
	M			src/solver/solver_petsc.cc
	P			src/solver/solver_petsc.hh Copied from src/synchronizer/dof_synchronizer.hh
	M			src/solver/solver_vector.hh
	M			src/solver/solver_vector_default.hh
	M			src/solver/solver_vector_default_tmpl.hh
	M			src/solver/solver_vector_distributed.hh
	M			src/solver/solver_vector_petsc.cc
	M			src/solver/solver_vector_petsc.hh
	M			src/solver/sparse_matrix.hh
	M			src/solver/sparse_matrix_aij.cc
	M			src/solver/sparse_matrix_aij.hh
	M			src/solver/sparse_matrix_aij_inline_impl.hh
	M			src/solver/sparse_matrix_petsc.cc
	M			src/solver/sparse_matrix_petsc.hh
	M			src/solver/sparse_solver.hh
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/solver/terms_to_assemble.hh
	M			src/synchronizer/communication_buffer.hh
	M			src/synchronizer/communication_buffer_inline_impl.hh
	M			src/synchronizer/communication_descriptor.hh
	M			src/synchronizer/communication_descriptor_tmpl.hh
	M			src/synchronizer/communication_request.hh
	M			src/synchronizer/communication_tag.hh
	M			src/synchronizer/communications.hh
	M			src/synchronizer/communications_tmpl.hh
	M			src/synchronizer/communicator.cc
	M			src/synchronizer/communicator.hh
	M			src/synchronizer/communicator_event_handler.hh
	M			src/synchronizer/communicator_inline_impl.hh
	M			src/synchronizer/communicator_mpi_inline_impl.hh
	M			src/synchronizer/data_accessor.cc
	M			src/synchronizer/data_accessor.hh
	M			src/synchronizer/dof_synchronizer.cc
	P			src/synchronizer/dof_synchronizer.hh Copied to src/solver/solver_petsc.hh
	M			src/synchronizer/dof_synchronizer_inline_impl.hh
	M			src/synchronizer/element_info_per_processor.cc
	M			src/synchronizer/element_info_per_processor.hh
	M			src/synchronizer/element_info_per_processor_tmpl.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/element_synchronizer.hh
	M			src/synchronizer/facet_synchronizer.cc
	M			src/synchronizer/facet_synchronizer.hh
	P			src/synchronizer/facet_synchronizer_inline_impl.hh Copied from src/model/common/dof_manager/dof_manager_default_inline_impl.hh
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/grid_synchronizer.hh
	M			src/synchronizer/grid_synchronizer_tmpl.hh
	M			src/synchronizer/master_element_info_per_processor.cc
	M			src/synchronizer/mpi_communicator_data.hh
	M			src/synchronizer/node_info_per_processor.cc
	M			src/synchronizer/node_info_per_processor.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/node_synchronizer_inline_impl.hh
	M			src/synchronizer/periodic_node_synchronizer.cc
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/slave_element_info_per_processor.cc
	M			src/synchronizer/synchronizer.cc
	M			src/synchronizer/synchronizer.hh
	M			src/synchronizer/synchronizer_impl.hh
	M			src/synchronizer/synchronizer_impl_tmpl.hh
	M			src/synchronizer/synchronizer_registry.hh
	M			src/synchronizer/synchronizer_tmpl.hh
	M			test/test_common/test_tensors.cc
	M			test/test_fe_engine/test_fe_engine_fixture.hh
	M			test/test_fe_engine/test_fe_engine_structural_fixture.hh
	M			test/test_gtest_utils.hh
	M			test/test_model/patch_tests/patch_test_linear_fixture.hh
	M			test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
	M			test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_material.hh
	M			test/test_model/test_common/test_non_local_toolbox/test_material_damage.hh
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_remove_damage_weight_function.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_quadrangle.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron_fragmentation.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_buildfragments/test_cohesive_parallel_buildfragments.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_intrinsic/test_cohesive_parallel_intrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
	M			test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_quasistatic.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_finite_deformation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.hh
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_discrete_kirchhoff_triangle_18.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
	M			test/test_python_interface/test_common.cc
	M			third-party/iohelper/src/base64.hh
	M			third-party/iohelper/src/container_array.hh
	M			third-party/iohelper/src/dumper.cc
	M			third-party/iohelper/src/dumper.hh
	M			third-party/iohelper/src/dumper_C_wrapper.cc
	M			third-party/iohelper/src/dumper_lammps.cc
	M			third-party/iohelper/src/dumper_lammps.hh
	M			third-party/iohelper/src/dumper_paraview.cc
	M			third-party/iohelper/src/dumper_paraview.hh
	M			third-party/iohelper/src/dumper_restart.cc
	M			third-party/iohelper/src/dumper_restart.hh
	M			third-party/iohelper/src/dumper_text.cc
	M			third-party/iohelper/src/dumper_text.hh
	M			third-party/iohelper/src/field.cc
	M			third-party/iohelper/src/field.hh
	M			third-party/iohelper/src/field_inline_impl.hh
	M			third-party/iohelper/src/field_interface.hh
	M			third-party/iohelper/src/file_manager.hh
	M			third-party/iohelper/src/iohelper_common.hh
	M			third-party/iohelper/src/paraview_helper.cc
	M			third-party/iohelper/src/paraview_helper.hh
	M			third-party/iohelper/src/paraview_helper.tcc
	M			third-party/iohelper/src/reader.cc
	M			third-party/iohelper/src/reader.hh
	M			third-party/iohelper/src/reader_restart.cc
	M			third-party/iohelper/src/reader_restart.hh
	M			third-party/iohelper/src/variable.cc
	M			third-party/iohelper/src/variable.hh
	M			third-party/iohelper/src/variable_inline_impl.hh
	M			third-party/iohelper/src/variable_interface.hh
	M			third-party/iohelper/src/visitor.hh
	M			third-party/iohelper/test/mesh_io_msh.hh