diff --git a/python/py_group_manager.cc b/python/py_group_manager.cc
index a4d05bb73..3209c42a3 100644
--- a/python/py_group_manager.cc
+++ b/python/py_group_manager.cc
@@ -1,172 +1,175 @@
/**
* Copyright (©) 2019-2023 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* This file is part of Akantu
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see .
*/
/* -------------------------------------------------------------------------- */
#include "py_aka_array.hh"
/* -------------------------------------------------------------------------- */
+#include
#include
#include
/* -------------------------------------------------------------------------- */
+#include
+/* -------------------------------------------------------------------------- */
#include
#include
/* -------------------------------------------------------------------------- */
namespace py = pybind11;
/* -------------------------------------------------------------------------- */
namespace akantu {
/* -------------------------------------------------------------------------- */
void register_group_manager(py::module & mod) {
/* ------------------------------------------------------------------------ */
py::class_(mod, "NodeGroup")
.def(
"getNodes",
[](NodeGroup & self) -> decltype(auto) { return self.getNodes(); },
py::return_value_policy::reference)
.def("__len__", &NodeGroup::size)
.def(
"__iter__",
[](const NodeGroup & self) {
return py::make_iterator(self.begin(), self.end());
},
py::keep_alive<0, 1>())
.def("__contains__", [](const NodeGroup & self,
UInt node) { return self.find(node) != -1; })
.def("getName", &NodeGroup::getName)
.def("clear", &NodeGroup::clear)
.def("empty", &NodeGroup::empty)
.def("append", &NodeGroup::append)
.def(
"add",
[](NodeGroup & self, UInt node, bool check_for_duplicate) {
auto && it = self.add(node, check_for_duplicate);
return *it;
},
py::arg("node"), py::arg("check_for_duplicate") = true)
.def("remove", &NodeGroup::add);
/* ------------------------------------------------------------------------ */
- py::class_(mod, "ElementGroup")
+ py::class_(mod, "ElementGroup")
.def(
"getNodeGroup",
[](ElementGroup & self) -> decltype(auto) {
return self.getNodeGroup();
},
py::return_value_policy::reference)
.def("getName", &ElementGroup::getName)
.def(
"getElements",
[](ElementGroup & self) -> decltype(auto) {
return self.getElements();
},
py::return_value_policy::reference)
.def(
"getNodeGroup",
[](ElementGroup & self) -> decltype(auto) {
return self.getNodeGroup();
},
py::return_value_policy::reference)
.def("__len__", [](const ElementGroup & self) { return self.size(); })
.def("clear", [](ElementGroup & self) { self.clear(); })
.def("empty", &ElementGroup::empty)
.def("append", &ElementGroup::append)
.def("optimize", &ElementGroup::optimize)
.def(
"add",
[](ElementGroup & self, const Element & element, bool add_nodes,
bool check_for_duplicate) {
self.add(element, add_nodes, check_for_duplicate);
},
py::arg("element"), py::arg("add_nodes") = false,
py::arg("check_for_duplicate") = true)
.def("fillFromNodeGroup", &ElementGroup::fillFromNodeGroup)
.def("addDimension", &ElementGroup::addDimension);
/* ------------------------------------------------------------------------ */
py::class_(mod, "GroupManager")
.def(
"getElementGroup",
[](GroupManager & self, const std::string & name) -> decltype(auto) {
return self.getElementGroup(name);
},
py::return_value_policy::reference)
.def("iterateElementGroups",
[](GroupManager & self) -> decltype(auto) {
std::vector> groups;
for (auto & group : self.iterateElementGroups()) {
groups.emplace_back(group);
}
return groups;
})
.def("iterateNodeGroups",
[](GroupManager & self) -> decltype(auto) {
std::vector> groups;
for (auto & group : self.iterateNodeGroups()) {
groups.emplace_back(group);
}
return groups;
})
.def("createNodeGroup", &GroupManager::createNodeGroup,
py::return_value_policy::reference)
.def(
"createElementGroup",
[](GroupManager & self, const std::string & id, Int spatial_dimension,
bool replace_group) -> decltype(auto) {
return self.createElementGroup(id, spatial_dimension,
replace_group);
},
py::arg("id"), py::arg("spatial_dimension"),
py::arg("replace_group") = false, py::return_value_policy::reference)
.def("createGroupsFromMeshDataUInt",
&GroupManager::createGroupsFromMeshData)
.def("createElementGroupFromNodeGroup",
&GroupManager::createElementGroupFromNodeGroup, py::arg("name"),
py::arg("node_group"), py::arg("dimension") = _all_dimensions)
.def(
"getNodeGroup",
[](GroupManager & self, const std::string & name) -> decltype(auto) {
return self.getNodeGroup(name);
},
py::return_value_policy::reference)
.def(
"nodeGroups",
[](GroupManager & self) {
std::vector groups;
for (auto & g : self.iterateNodeGroups()) {
groups.push_back(&g);
}
return groups;
},
py::return_value_policy::reference)
.def(
"elementGroups",
[](GroupManager & self) {
std::vector groups;
for (auto & g : self.iterateElementGroups()) {
groups.push_back(&g);
}
return groups;
},
py::return_value_policy::reference)
.def("createBoundaryGroupFromGeometry",
&GroupManager::createBoundaryGroupFromGeometry);
}
} // namespace akantu
diff --git a/python/py_model.cc b/python/py_model.cc
index 21c9a7544..8ea74cd06 100644
--- a/python/py_model.cc
+++ b/python/py_model.cc
@@ -1,202 +1,238 @@
/**
* Copyright (©) 2019-2023 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* This file is part of Akantu
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see .
*/
/* -------------------------------------------------------------------------- */
#include "py_aka_array.hh"
/* -------------------------------------------------------------------------- */
#include
#include
#include
#include
#include
#include
/* -------------------------------------------------------------------------- */
#include
#include
#include
/* -------------------------------------------------------------------------- */
namespace py = pybind11;
/* -------------------------------------------------------------------------- */
namespace akantu {
template
void register_constitutive_law_handler(py::module & mod,
const std::string & name) {
py::class_,
ModelType>(mod, name.c_str(), py::multiple_inheritance())
.def(
"getConstitutiveLaw",
[](ConstitutiveLawsHandler & self,
UInt constitutive_law_id) -> decltype(auto) {
return self.getConstitutiveLaw(constitutive_law_id);
},
py::arg("constitutive_law_id"), py::return_value_policy::reference)
.def(
"getConstitutiveLaw",
[](ConstitutiveLawsHandler & self,
const ID & constitutive_law_name) -> decltype(auto) {
return self.getConstitutiveLaw(constitutive_law_name);
},
py::arg("constitutive_law_name"), py::return_value_policy::reference)
.def(
"getConstitutiveLaw",
[](ConstitutiveLawsHandler & self,
const Element & element) -> decltype(auto) {
return self.getConstitutiveLaw(element);
},
py::arg("element"), py::return_value_policy::reference)
.def("getNbConstitutiveLaws",
&ConstitutiveLawsHandler::getNbConstitutiveLaws)
.def("getConstitutiveLawIndex",
&ConstitutiveLawsHandler::getConstitutiveLawIndex)
.def("setConstitutiveLawSelector",
[](ConstitutiveLawsHandler & self,
std::shared_ptr
constitutive_law_selector) {
self.setConstitutiveLawSelector(constitutive_law_selector);
})
.def("getConstitutiveLawSelector",
&ConstitutiveLawsHandler::getConstitutiveLawSelector)
.def(
"getConstitutiveLawByElement",
[](const ConstitutiveLawsHandler &
self) -> decltype(auto) {
return self.getConstitutiveLawByElement();
},
py::return_value_policy::reference, py::keep_alive<0, 1>())
.def("reassignConstitutiveLaw",
&ConstitutiveLawsHandler::reassignConstitutiveLaw)
.def(
"registerNewConstitutiveLaw",
[](ConstitutiveLawsHandler & self,
const ID & cl_name, const ID & cl_type,
const ID & opt_param) -> decltype(auto) {
return self.registerNewConstitutiveLaw(cl_name, cl_type, opt_param);
},
py::arg("constitutive_law_name"), py::arg("constitutive_law_type"),
py::arg("option") = "", py::return_value_policy::reference)
.def("initConstitutiveLaws",
&ConstitutiveLawsHandler::initConstitutiveLaws)
.def("flattenInternal",
&ConstitutiveLawsHandler::flattenInternal,
py::return_value_policy::reference)
.def("inflateInternal",
&ConstitutiveLawsHandler::inflateInternal,
py::return_value_policy::reference);
}
/* -------------------------------------------------------------------------- */
void register_model(py::module & mod) {
py::class_(mod, "ModelSolver",
py::multiple_inheritance())
.def(
"getNonLinearSolver",
[](ModelSolver & self, const ID & solver_id) -> NonLinearSolver & {
return self.getNonLinearSolver(solver_id);
},
py::arg("solver_id") = "", py::return_value_policy::reference)
.def(
"getTimeStepSolver",
[](ModelSolver & self, const ID & solver_id) -> TimeStepSolver & {
return self.getTimeStepSolver(solver_id);
},
py::arg("solver_id") = "", py::return_value_policy::reference)
.def(
"solveStep",
[](ModelSolver & self, const ID & solver_id) {
self.solveStep(solver_id);
},
py::arg("solver_id") = "")
.def(
"solveStep",
[](ModelSolver & self, SolverCallback & callback,
const ID & solver_id) { self.solveStep(callback, solver_id); },
py::arg("callback"), py::arg("solver_id") = "");
py::class_(mod, "Model", py::multiple_inheritance())
.def("setBaseName", &Model::setBaseName)
.def("setDirectory", &Model::setDirectory)
.def("getFEEngine", &Model::getFEEngine, py::arg("name") = "",
py::return_value_policy::reference)
.def("getFEEngineBoundary", &Model::getFEEngine, py::arg("name") = "",
py::return_value_policy::reference)
.def("addDumpFieldVector", &Model::addDumpFieldVector)
.def("addDumpField", &Model::addDumpField)
.def("setBaseNameToDumper", &Model::setBaseNameToDumper)
.def("addDumpFieldVectorToDumper", &Model::addDumpFieldVectorToDumper)
.def("addDumpFieldToDumper", &Model::addDumpFieldToDumper)
.def("dump", [](Model & self) { self.dump(); })
.def(
"dump", [](Model & self, UInt step) { self.dump(step); },
py::arg("step"))
.def(
"dump",
[](Model & self, Real time, UInt step) { self.dump(time, step); },
py::arg("time"), py::arg("step"))
.def(
"dump",
[](Model & self, const std::string & dumper) { self.dump(dumper); },
py::arg("dumper_name"))
.def(
"dump",
[](Model & self, const std::string & dumper, UInt step) {
self.dump(dumper, step);
},
py::arg("dumper_name"), py::arg("step"))
.def(
"dump",
[](Model & self, const std::string & dumper, Real time, UInt step) {
self.dump(dumper, time, step);
},
py::arg("dumper_name"), py::arg("time"), py::arg("step"))
+
+ .def(
+ "dumpGroup",
+ [](Model & self, const std::string & group_name) {
+ self.dumpGroup(group_name);
+ },
+ py::arg("group_name"))
+ .def(
+ "setGroupDirectory",
+ [](Model & self, const std::string & directory,
+ const std::string & group_name) {
+ self.setGroupDirectory(directory, group_name);
+ },
+ py::arg("directory"), py::arg("group_name"))
+ .def(
+ "setGroupBaseName",
+ [](Model & self, const std::string & basename,
+ const std::string & group_name) {
+ self.setGroupBaseName(basename, group_name);
+ },
+ py::arg("basename"), py::arg("group_name"))
+ .def(
+ "addDumpGroupField",
+ [](Model & self, const std::string & field_id,
+ const std::string & group_name) {
+ self.addDumpGroupField(field_id, group_name);
+ },
+ py::arg("field_id"), py::arg("group_name"))
+
+ .def(
+ "addDumpGroupFieldVector",
+ [](Model & self, const std::string & field_id,
+ const std::string & group_name) {
+ self.addDumpGroupFieldVector(field_id, group_name);
+ },
+ py::arg("field_id"), py::arg("group_name"))
.def("initNewSolver", &Model::initNewSolver)
.def(
"getNewSolver",
[](Model & self, const std::string id,
const TimeStepSolverType & time,
const NonLinearSolverType & type) {
self.getNewSolver(id, time, type);
},
py::return_value_policy::reference)
.def(
"setIntegrationScheme",
[](Model & self, const std::string id, const std::string primal,
const IntegrationSchemeType & scheme_type,
IntegrationScheme::SolutionType solution_type) {
self.setIntegrationScheme(id, primal, scheme_type, solution_type);
},
py::arg("id"), py::arg("primal"), py::arg("scheme_type"),
py::arg("solution_type") =
IntegrationScheme::SolutionType::_not_defined)
.def("getDOFManager", &Model::getDOFManager,
py::return_value_policy::reference)
.def("assembleMatrix", &Model::assembleMatrix);
}
} // namespace akantu