diff --git a/packages/00_core.cmake b/packages/00_core.cmake
index 767d78d6c..9e5ffec0c 100644
--- a/packages/00_core.cmake
+++ b/packages/00_core.cmake
@@ -1,375 +1,377 @@
#===============================================================================
# @file core.cmake
#
# @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
# @author Nicolas Richart <nicolas.richart@epfl.ch>
#
# @date Mon Nov 21 18:19:15 2011
#
# @brief package description for core
#
# @section LICENSE
#
# Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
# Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
#
# Akantu is free software: you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option) any
# later version.
#
# Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with Akantu. If not, see <http://www.gnu.org/licenses/>.
#
#===============================================================================
set(AKANTU_CORE ON CACHE INTERNAL "core package for Akantu" FORCE)
set(AKANTU_CORE_FILES
common/aka_array.cc
common/aka_array.hh
common/aka_array_tmpl.hh
common/aka_blas_lapack.hh
common/aka_circular_array.hh
common/aka_circular_array_inline_impl.cc
common/aka_common.cc
common/aka_common.hh
common/aka_common_inline_impl.cc
common/aka_csr.hh
common/aka_error.cc
common/aka_error.hh
common/aka_event_handler_manager.hh
common/aka_extern.cc
common/aka_fwd.hh
common/aka_grid_dynamic.hh
common/aka_math.cc
common/aka_math.hh
common/aka_math_tmpl.hh
common/aka_memory.cc
common/aka_memory.hh
common/aka_memory_inline_impl.cc
common/aka_random_generator.hh
common/aka_safe_enum.hh
common/aka_static_memory.cc
common/aka_static_memory.hh
common/aka_static_memory_inline_impl.cc
common/aka_static_memory_tmpl.hh
common/aka_typelist.hh
common/aka_types.hh
common/aka_visitor.hh
common/aka_voigthelper.hh
common/aka_voigthelper.cc
fem/element_class.cc
fem/element_class.hh
fem/element_class_tmpl.hh
fem/element_classes/element_class_hexahedron_8_inline_impl.cc
fem/element_classes/element_class_pentahedron_6_inline_impl.cc
fem/element_classes/element_class_point_1_inline_impl.cc
fem/element_classes/element_class_quadrangle_4_inline_impl.cc
fem/element_classes/element_class_quadrangle_8_inline_impl.cc
fem/element_classes/element_class_segment_2_inline_impl.cc
fem/element_classes/element_class_segment_3_inline_impl.cc
fem/element_classes/element_class_tetrahedron_10_inline_impl.cc
fem/element_classes/element_class_tetrahedron_4_inline_impl.cc
fem/element_classes/element_class_triangle_3_inline_impl.cc
fem/element_classes/element_class_triangle_6_inline_impl.cc
fem/fe_engine.cc
fem/fe_engine.hh
fem/fe_engine_inline_impl.cc
fem/fe_engine_template.hh
fem/fe_engine_template_tmpl.hh
fem/geometrical_data_tmpl.hh
fem/geometrical_element.cc
fem/integration_element.cc
fem/integrator.hh
fem/integrator_gauss.hh
fem/integrator_gauss_inline_impl.cc
fem/interpolation_element.cc
fem/interpolation_element_tmpl.hh
fem/shape_functions.hh
fem/shape_functions_inline_impl.cc
fem/shape_lagrange.cc
fem/shape_lagrange.hh
fem/shape_lagrange_inline_impl.cc
fem/shape_linked.cc
fem/shape_linked.hh
fem/shape_linked_inline_impl.cc
io/dumper/dumpable.hh
io/dumper/dumpable_inline_impl.hh
io/mesh_io.cc
io/mesh_io.hh
io/mesh_io/mesh_io_abaqus.cc
io/mesh_io/mesh_io_abaqus.hh
io/mesh_io/mesh_io_diana.cc
io/mesh_io/mesh_io_diana.hh
io/mesh_io/mesh_io_msh.cc
io/mesh_io/mesh_io_msh.hh
io/model_io.cc
io/model_io.hh
io/parser/algebraic_parser.hh
io/parser/input_file_parser.hh
io/parser/parsable.cc
io/parser/parsable.hh
io/parser/parsable_tmpl.hh
io/parser/parser.cc
io/parser/parser.hh
io/parser/parser_tmpl.hh
io/parser/cppargparse/cppargparse.hh
io/parser/cppargparse/cppargparse.cc
io/parser/cppargparse/cppargparse_tmpl.hh
mesh/element_group.cc
mesh/element_group.hh
mesh/element_group_inline_impl.cc
mesh/element_type_map.hh
mesh/element_type_map_tmpl.hh
mesh/group_manager.cc
mesh/group_manager.hh
mesh/group_manager_inline_impl.cc
mesh/mesh.cc
mesh/mesh.hh
mesh/mesh_filter.hh
mesh/mesh_data.cc
mesh/mesh_data.hh
mesh/mesh_data_tmpl.hh
mesh/mesh_inline_impl.cc
mesh/node_group.cc
mesh/node_group.hh
mesh/node_group_inline_impl.cc
mesh_utils/mesh_partition.cc
mesh_utils/mesh_partition.hh
mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
mesh_utils/mesh_partition/mesh_partition_scotch.hh
mesh_utils/mesh_pbc.cc
mesh_utils/mesh_utils.cc
mesh_utils/mesh_utils.hh
mesh_utils/mesh_utils_inline_impl.cc
mesh_utils/mesh_graph.cc
mesh_utils/mesh_graph.hh
model/boundary_condition.hh
model/boundary_condition_functor.hh
model/boundary_condition_functor_inline_impl.cc
model/boundary_condition_tmpl.hh
model/integration_scheme/generalized_trapezoidal.hh
model/integration_scheme/generalized_trapezoidal_inline_impl.cc
model/integration_scheme/integration_scheme_1st_order.hh
model/integration_scheme/integration_scheme_2nd_order.hh
model/integration_scheme/newmark-beta.hh
model/integration_scheme/newmark-beta_inline_impl.cc
model/model.cc
model/model.hh
model/model_inline_impl.cc
model/solid_mechanics/material.cc
model/solid_mechanics/material.hh
model/solid_mechanics/material_inline_impl.cc
model/solid_mechanics/material_list.hh
model/solid_mechanics/material_random_internal.hh
model/solid_mechanics/material_selector.hh
model/solid_mechanics/material_selector_tmpl.hh
model/solid_mechanics/materials/internal_field.hh
model/solid_mechanics/materials/internal_field_tmpl.hh
model/solid_mechanics/materials/material_elastic.cc
model/solid_mechanics/materials/material_elastic.hh
model/solid_mechanics/materials/material_elastic_inline_impl.cc
model/solid_mechanics/materials/material_thermal.cc
model/solid_mechanics/materials/material_thermal.hh
model/solid_mechanics/materials/random_internal_field.hh
model/solid_mechanics/materials/random_internal_field_tmpl.hh
model/solid_mechanics/solid_mechanics_model.cc
model/solid_mechanics/solid_mechanics_model.hh
model/solid_mechanics/solid_mechanics_model_inline_impl.cc
model/solid_mechanics/solid_mechanics_model_mass.cc
model/solid_mechanics/solid_mechanics_model_material.cc
model/solid_mechanics/solid_mechanics_model_tmpl.hh
model/solid_mechanics/solid_mechanics_model_event_handler.hh
solver/solver.cc
solver/solver.hh
solver/sparse_matrix.cc
solver/sparse_matrix.hh
solver/sparse_matrix_inline_impl.cc
synchronizer/communication_buffer.hh
synchronizer/communication_buffer_inline_impl.cc
synchronizer/data_accessor.cc
synchronizer/data_accessor.hh
synchronizer/data_accessor_inline_impl.cc
synchronizer/distributed_synchronizer.cc
synchronizer/distributed_synchronizer.hh
synchronizer/distributed_synchronizer_tmpl.hh
synchronizer/dof_synchronizer.cc
synchronizer/dof_synchronizer.hh
synchronizer/dof_synchronizer_inline_impl.cc
synchronizer/filtered_synchronizer.cc
synchronizer/filtered_synchronizer.hh
synchronizer/mpi_type_wrapper.hh
synchronizer/pbc_synchronizer.cc
synchronizer/pbc_synchronizer.hh
synchronizer/real_static_communicator.hh
synchronizer/static_communicator.cc
synchronizer/static_communicator.hh
synchronizer/static_communicator_dummy.hh
synchronizer/static_communicator_inline_impl.hh
synchronizer/synchronizer.cc
synchronizer/synchronizer.hh
synchronizer/synchronizer_registry.cc
synchronizer/synchronizer_registry.hh
)
set(AKANTU_CORE_DEB_DEPEND
libboost-dev
)
set(AKANTU_CORE_TESTS
test_csr
test_facet_element_mapping
test_facet_extraction_tetrahedron_4
test_facet_extraction_triangle_3
test_grid
test_interpolate_stress
test_local_material
test_material_damage_non_local
test_material_thermal
test_matrix
test_mesh_boundary
test_mesh_data
test_mesh_io_msh
test_mesh_io_msh_physical_names
test_mesh_partitionate_mesh_data
test_parser
test_pbc_tweak
test_purify_mesh
test_solid_mechanics_model_bar_traction2d
test_solid_mechanics_model_bar_traction2d_structured
test_solid_mechanics_model_bar_traction2d_structured_pbc
test_solid_mechanics_model_boundary_condition
test_solid_mechanics_model_circle_2
test_solid_mechanics_model_cube3d
test_solid_mechanics_model_cube3d_pbc
test_solid_mechanics_model_cube3d_tetra10
test_solid_mechanics_model_square
test_solid_mechanics_model_material_eigenstrain
test_static_memory
test_surface_extraction_tetrahedron_4
test_surface_extraction_triangle_3
test_vector
test_vector_iterator
test_weight
test_math
)
set(AKANTU_CORE_MANUAL_FILES
manual.sty
manual.cls
manual.tex
manual-macros.sty
manual-titlepages.tex
manual-introduction.tex
manual-gettingstarted.tex
manual-io.tex
manual-solidmechanicsmodel.tex
manual-lumping.tex
manual-elements.tex
manual-appendix-elements.tex
manual-backmatter.tex
manual-bibliography.bib
manual-bibliographystyle.bst
figures/bc_and_ic_example.pdf
figures/boundary.pdf
figures/boundary.svg
figures/dirichlet.pdf
figures/dirichlet.svg
figures/doc_wheel.pdf
figures/doc_wheel.svg
figures/dynamic_analysis.png
figures/explicit_dynamic.pdf
figures/explicit_dynamic.svg
figures/static.pdf
figures/static.svg
figures/hooke_law.pdf
figures/hot-point-1.png
figures/hot-point-2.png
figures/implicit_dynamic.pdf
figures/implicit_dynamic.svg
figures/insertion.pdf
figures/interpolate.pdf
figures/interpolate.svg
+ figures/problemDomain.pdf_tex
+ figures/problemDomain.pdf
figures/static_analysis.png
figures/stress_strain_el.pdf
figures/tangent.pdf
figures/tangent.svg
figures/vectors.pdf
figures/vectors.svg
figures/elements/hexahedron_8.pdf
figures/elements/hexahedron_8.svg
figures/elements/quadrangle_4.pdf
figures/elements/quadrangle_4.svg
figures/elements/quadrangle_8.pdf
figures/elements/quadrangle_8.svg
figures/elements/segment_2.pdf
figures/elements/segment_2.svg
figures/elements/segment_3.pdf
figures/elements/segment_3.svg
figures/elements/tetrahedron_10.pdf
figures/elements/tetrahedron_10.svg
figures/elements/tetrahedron_4.pdf
figures/elements/tetrahedron_4.svg
figures/elements/triangle_3.pdf
figures/elements/triangle_3.svg
figures/elements/triangle_6.pdf
figures/elements/triangle_6.svg
figures/elements/xtemp.pdf
)
find_program(READLINK_COMMAND readlink)
find_program(ADDR2LINE_COMMAND addr2line)
mark_as_advanced(READLINK_COMMAND)
mark_as_advanced(ADDR2LINE_COMMAND)
include(CheckFunctionExists)
check_function_exists(clock_gettime _clock_gettime)
if(NOT _clock_gettime)
set(AKANTU_USE_OBSOLETE_GETTIMEOFDAY ON)
else()
set(AKANTU_USE_OBSOLETE_GETTIMEOFDAY OFF)
endif()
list(APPEND AKANTU_BOOST_COMPONENTS
graph
)
set(AKANTU_CORE_DOCUMENTATION
"
This package is the core engine of Akantu. It depends on:
\\begin{itemize}
\\item A C++ compiler (\\href{http://gcc.gnu.org/}{GCC} >= 4, or \\href{https://software.intel.com/en-us/intel-compilers}{Intel}).
\\item The \\href{http://www.cmake.org/}{CMake}, the cross-platform, open-source build system.
\\item The \\href{http://www.boost.org/}{Boost} C++ portable libraries.
\\item The \\href{http://www.zlib.net/}{zlib} compression library.
\\end{itemize}
Under Ubuntu (14.04 LTS) the installation can be performed using the commands:
\\begin{command}
> sudo apt-get install build-essential cmake-curses-gui libboost-dev zlib1g-dev
\\end{command}
")
\ No newline at end of file