diff --git a/cmake/Modules/CMakePackagesSystem.cmake b/cmake/Modules/CMakePackagesSystem.cmake
index 4f76dece0..238f7ca0b 100644
--- a/cmake/Modules/CMakePackagesSystem.cmake
+++ b/cmake/Modules/CMakePackagesSystem.cmake
@@ -1,1093 +1,1094 @@
#===============================================================================
# @file CMakePackagesSystem.cmake
#
# @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
# @author Nicolas Richart <nicolas.richart@epfl.ch>
#
# @date creation: Wed Nov 05 2014
# @date last modification: Wed Jan 20 2016
#
# @brief Set of macros used by akantu to handle the package system
#
# @section LICENSE
#
# Copyright (©) 2015 EPFL (Ecole Polytechnique Fédérale de Lausanne) Laboratory
# (LSMS - Laboratoire de Simulation en Mécanique des Solides)
#
# Akantu is free software: you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option) any
# later version.
#
# Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with Akantu. If not, see <http://www.gnu.org/licenses/>.
#
#===============================================================================
#[=======================================================================[.rst:
#CMakePackagesSystem
#-------------------
#
#This package defines multiple function to handle packages. This packages can
#be of two kinds regular ones and extra_packages (ex: in akantu the LGPL part
#is regular packages and extra packages are on Propetary license)
#
#Package are loaded with the help of the command:
#
#.. command:: package_list_packages
#
# package_list_packages(<regular_package_folder>
# [ EXTRA_PACKAGE_FOLDER <extra_package_folder> ]
# [ SOURCE_FOLDER <source_folder>]
# [ TEST_FOLDER <test_folder> ]
# [ MANUAL_FOLDER <manual_folder> ]
# )
#
# This command will look for packages name like ``<regular_package_folder>/<package>.cmake``
# OR ``<extra_package_folder>/<package>/package.cmake``
#
#A package is a cmake script that should contain at list the declaration of a
#package
#
#.. command:: package_declare
#
# package_declare(<package real name>
# [EXTERNAL] [META] [ADVANCED] [NOT_OPTIONAL]
# [DESCRIPTION <description>] [DEFAULT <default_value>]
# [DEPENDS <pkg> ...]
# [BOOST_COMPONENTS <pkg> ...]
# [EXTRA_PACKAGE_OPTIONS <opt> ...]
# [COMPILE_FLAGS <lang> <flags>]
# [SYSTEM <ON|OFF|AUTO> [ <script_to_compile> ]]
# [FEATURES_PUBLIC <feature> ...]
# [FEATURES_PRIVATE <feature> ...]
# [EXCLUDE_FROM_ALL]
# )
#
#.. command:: package_declare_sources
#
# It can also declare multiple informations:
# source files:
#
# package_declare_sources(<package real name>
# <src1> <src2> ... <srcn>)
#
#.. command:: package_declare_documentation
#
# a LaTeX documentation
# package_declare_documentation(<package real name>
# <line1> <line2> ...<linen>)
#
#.. command:: package_declare_documentation_files
#
# LaTeX documentation files
# package_declare_documentation_files(<package real name>
# <file1> <file2> ... <filen>)
#
#Different function can also be retrieved from the package system by using the
#different accessors
#
#.. command:: package_get_name
# package_get_name(<pkg> <retval>)
#
#.. command:: package_get_real_name
# package_get_real_name(<pkg> <retval>)
#
#.. command:: package_get_option_name
# package_get_option_name(<pkg> <retval>)
#
#.. command:: package_use_system
# package_use_system(<pkg> <retval>)
#
#.. command:: package_get_nature
# package_get_nature(<pkg> <retval>)
#
#.. command:: package_get_description
# package_get_description(<pkg> <retval>)
#
#.. command:: package_get_filename
# package_get_filename(<pkg> <retval>)
#
#.. command:: package_get_sources_folder
# package_get_sources_folder(<pkg> <retval>)
#.. command:: package_get_tests_folder
# package_get_tests_folder(<pkg> <retval>)
#.. command:: package_get_manual_folder
# package_get_manual_folder(<pkg> <retval>)
#
#.. command:: package_get_find_package_extra_options
# package_get_find_package_extra_options(<pkg> <retval>)
#
#.. command:: package_get_compile_flags
# package_get_compile_flags(<pkg> <lang> <retval>)
#.. command:: package_set_compile_flags
# package_set_compile_flags(<pkg> <lang> <flag1> <flag2> ... <flagn>)
#
#.. command:: package_get_include_dir
# package_get_include_dir(<pkg> <retval>)
#.. command:: package_set_include_dir
# package_set_include_dir(<pkg> <inc1> <inc2> ... <incn>)
#.. command:: package_add_include_dir
# package_add_include_dir(<pkg> <inc1> <inc2> ... <incn>)
#
#.. command:: package_get_libraries
# package_get_libraries(<pkg> <retval>)
#.. command:: package_set_libraries
# package_set_libraries(<pkg> <lib1> <lib2> ... <libn>)
#
#.. command:: package_add_extra_dependency
# package_add_extra_dependency(pkg <dep1> <dep2> ... <depn>)
#.. command:: package_rm_extra_dependency
# package_rm_extra_dependency(<pkg> <dep>)
#.. command:: package_get_extra_dependencies
# package_get_extra_dependencies(<pkg> <retval>)
#
#.. command:: package_is_activated
# package_is_activated(<pkg> <retval>)
#.. command:: package_is_deactivated
# package_is_deactivated(<pkg> <retval>)
#
#.. command:: package_get_dependencies
# package_get_dependencies(<pkg> <PRIVATE|INTERFACE> <retval>)
#.. command:: package_add_dependencies
# package_add_dependencies(<pkg> <PRIVATE|INTERFACE> <dep1> <dep2> ... <depn>)
# package_remove_dependencies(<pkg> <dep1> <dep2> ... <depn>)
# package_remove_dependency(<pkg> <dep>)
#
#.. command:: package_on_enabled_script
# package_on_enabled_script(<pkg> <script>)
#
#.. command:: package_get_all_source_files
# package_get_all_source_files(<srcs> <public_headers> <private_headers>)
#.. command:: package_get_all_include_directories
# package_get_all_include_directories(<inc_dirs>)
#.. command:: package_get_all_external_informations
# package_get_all_external_informations(<include_dir> <libraries>)
#.. command:: package_get_all_definitions
# package_get_all_definitions(<definitions>)
#.. command:: package_get_all_extra_dependencies
# package_get_all_extra_dependencies(<dependencies>)
#.. command:: package_get_all_test_folders
# package_get_all_test_folders(<test_dirs>)
#.. command:: package_get_all_documentation_files
# package_get_all_documentation_files(<doc_files>)
#.. command:: package_get_all_activated_packages
# package_get_all_activated_packages(<activated_list>)
#.. command:: package_get_all_deactivated_packages
# package_get_all_deactivated_packages(<deactivated_list>)
#.. command:: package_get_all_packages
# package_get_all_packages(<packages_list>)
#.. command:: package_get_all_features_public
# package_get_all_features_public(<features>)
#.. command:: package_get_all_features_private
# package_get_all_features_private(<features>)
#
#
# .. command:: package_set_package_system_dependency
#
# package_set_package_system_dependency(<pkg> <system> <dep1>
# <dep2> ... <depn>)
#
# .. command:: package_get_package_system_dependency
#
# package_get_package_system_dependency(<pkg> <var>)
#
#
#]=======================================================================]
include(CMakeParseArguments)
#===============================================================================
# Package Management
#===============================================================================
if(__CMAKE_PACKAGES_SYSTEM)
return()
endif()
set(__CMAKE_PACKAGES_SYSTEM TRUE)
if(CMAKE_VERSION VERSION_GREATER 3.1.2)
cmake_policy(SET CMP0054 NEW)
endif()
#===============================================================================
option(AUTO_MOVE_UNKNOWN_FILES
"Give to cmake the permission to move the unregistered files to the ${PROJECT_SOURCE_DIR}/tmp directory" FALSE)
mark_as_advanced(AUTO_MOVE_UNKNOWN_FILES)
include(CMakePackagesSystemGlobalFunctions)
include(CMakePackagesSystemPrivateFunctions)
# ==============================================================================
# "Public" Accessors
# ==============================================================================
# ------------------------------------------------------------------------------
# Package name
# ------------------------------------------------------------------------------
function(package_get_name pkg pkg_name)
string(TOUPPER ${PROJECT_NAME} _project)
string(REPLACE "-" "_" _str_pkg "${pkg}")
string(TOUPPER ${_str_pkg} _u_package)
set(${pkg_name} ${_project}_PKG_${_u_package} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Real name
# ------------------------------------------------------------------------------
function(package_get_real_name pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_real_name(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Option name
# ------------------------------------------------------------------------------
function(package_get_option_name pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_option_name(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Set if system package or compile external lib
# ------------------------------------------------------------------------------
function(package_use_system pkg ret)
package_get_name(${pkg} _pkg_name)
_package_use_system(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_add_third_party_script_variable pkg var)
package_get_name(${pkg} _pkg_name)
_package_add_third_party_script_variable(${_pkg_name} ${var} ${ARGN})
set(${var} ${ARGN} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Set if system package or compile external lib
# ------------------------------------------------------------------------------
function(package_add_to_export_list pkg)
package_get_name(${pkg} _pkg_name)
_package_add_to_export_list(${_pkg_name} ${ARGN})
endfunction()
# ------------------------------------------------------------------------------
# Nature
# ------------------------------------------------------------------------------
function(package_get_nature pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_nature(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Description
# ------------------------------------------------------------------------------
function(package_get_description pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_description(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Package file name
# ------------------------------------------------------------------------------
function(package_get_filename pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_filename(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Source files
# ------------------------------------------------------------------------------
function(package_get_source_files pkg ret_srcs ret_pub ret_priv)
package_get_name(${pkg} _pkg_name)
_package_get_source_files(${_pkg_name} _tmp_srcs _tmp_pub _tmp_priv)
set(${ret_srcs} ${_tmp_srcs} PARENT_SCOPE)
set(${ret_pub} ${_tmp_pub} PARENT_SCOPE)
set(${ret_priv} ${_tmp_pric} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Source folder
# ------------------------------------------------------------------------------
function(package_get_sources_folder pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_sources_folder(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Test folder
# ------------------------------------------------------------------------------
function(package_get_tests_folder pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_tests_folder(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Manual folder
# ------------------------------------------------------------------------------
function(package_get_manual_folder pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_manual_folder(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Extra option for the find_package
# ------------------------------------------------------------------------------
function(package_get_find_package_extra_options pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_find_package_extra_options(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_set_find_package_extra_options pkg)
package_get_name(${pkg} _pkg_name)
_package_set_find_package_extra_options(${_pkg_name} ${ARGN})
endfunction()
# ------------------------------------------------------------------------------
# Compilation flags
# ------------------------------------------------------------------------------
function(package_get_compile_flags pkg lang ret)
package_get_name(${pkg} _pkg_name)
_package_get_compile_flags(${_pkg_name} ${lang} _tmp)
set(${ret} "${_tmp}" PARENT_SCOPE)
endfunction()
function(package_set_compile_flags pkg lang)
package_get_name(${pkg} _pkg_name)
_package_set_compile_flags(${_pkg_name} ${lang} ${ARGN})
endfunction()
function(package_unset_compile_flags pkg lang)
package_get_name(${pkg} _pkg_name)
_package_unset_compile_flags(${_pkg_name} ${lang})
endfunction()
# ------------------------------------------------------------------------------
# Include dir
# ------------------------------------------------------------------------------
function(package_get_include_dir pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_include_dir(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_set_include_dir pkg)
package_get_name(${pkg} _pkg_name)
_package_set_include_dir(${_pkg_name} ${ARGN})
endfunction()
function(package_add_include_dir pkg)
package_get_name(${pkg} _pkg_name)
_package_add_include_dir(${_pkg_name} ${ARGN})
endfunction()
# ------------------------------------------------------------------------------
# Libraries
# ------------------------------------------------------------------------------
function(package_get_libraries pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_libraries(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_set_libraries pkg)
package_get_name(${pkg} _pkg_name)
_package_set_libraries(${_pkg_name} ${ARGN})
endfunction()
# ------------------------------------------------------------------------------
# Extra dependencies like custom commands of ExternalProject
# ------------------------------------------------------------------------------
function(package_add_extra_dependency pkg)
package_get_name(${pkg} _pkg_name)
_package_add_extra_dependency(${_pkg_name} ${ARGN})
endfunction()
function(package_rm_extra_dependency pkg dep)
package_get_name(${pkg} _pkg_name)
_package_rm_extra_dependency(${_pkg_name} ${dep})
endfunction()
function(package_get_extra_dependencies pkg ret)
package_get_name(${pkg} _pkg_name)
_package_get_extra_dependencies(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Activate/deactivate
# ------------------------------------------------------------------------------
function(package_is_activated pkg ret)
package_get_name(${pkg} _pkg_name)
_package_is_activated(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_is_deactivated pkg ret)
package_get_name(${pkg} _pkg_name)
_package_is_deactivated(${_pkg_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Direct dependencies
# ------------------------------------------------------------------------------
function(package_get_dependencies pkg type ret)
package_get_name(${pkg} _pkg_name)
_package_get_dependencies(${_pkg_name} ${type} _tmp_name)
_package_get_real_name(${_tmp_name} _tmp)
set(${ret} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_add_dependencies pkg type)
package_get_name(${pkg} _pkg_name)
foreach(_dep ${ARGN})
package_get_name(${_dep} _dep_pkg_name)
list(APPEND _tmp_deps ${_dep_pkg_name})
endforeach()
_package_add_dependencies(${_pkg_name} ${type} ${_tmp_deps})
endfunction()
function(package_remove_dependencies pkg type)
foreach(_dep ${ARGN})
package_remove_dependency(${pkg} _dep)
endforeach()
endfunction()
function(package_remove_dependency pkg dep)
package_get_name(${pkg} _pkg_name)
package_get_name(${dep} _dep_pkg_name)
_package_remove_dependency(${_pkg_name} PRIVATE ${_dep_pkg_name})
_package_remove_dependency(${_pkg_name} INTERFACE ${_dep_pkg_name})
endfunction()
# ------------------------------------------------------------------------------
# Documentation related functions
# ------------------------------------------------------------------------------
function(package_declare_documentation pkg)
package_get_name(${pkg} _pkg_name)
_package_set_documentation(${_pkg_name} ${ARGN})
endfunction()
function(package_declare_documentation_files pkg)
package_get_name(${pkg} _pkg_name)
_package_set_documentation_files(${_pkg_name} ${ARGN})
endfunction()
# ------------------------------------------------------------------------------
# Set any user variables needed
# ------------------------------------------------------------------------------
function(package_set_variable variable pkg)
package_get_name(${pkg} _pkg_name)
_package_set_variable(${variable} ${_pkg_name} ${ARGN})
endfunction()
function(package_add_to_variable variable pkg)
package_get_name(${pkg} _pkg_name)
_package_add_to_variable(${variable} ${_pkg_name} ${ARGN})
endfunction()
function(package_get_variable variable pkg value)
package_get_name(${pkg} _pkg_name)
_package_get_variable(${variable} ${_pkg_name} _value_tmp)
if(_value_tmp)
set(${value} ${_value_tmp} PARENT_SCOPE)
else()
unset(${value} PARENT_SCOPE)
endif()
endfunction()
# ------------------------------------------------------------------------------
# Exteral package system as apt rpm dependencies
# ------------------------------------------------------------------------------
function(package_set_package_system_dependency pkg system)
package_get_name(${pkg} _pkg_name)
_package_set_package_system_dependency(${_pkg_name} ${system} ${ARGN})
endfunction()
function(package_get_package_system_dependency pkg system var)
package_get_name(${pkg} _pkg_name)
_package_set_package_system_dependency(${_pkg_name} ${sytem} _tmp)
set(${var} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# ==============================================================================
# Global accessors
# ==============================================================================
# ------------------------------------------------------------------------------
# get the list of source files
# ------------------------------------------------------------------------------
function(package_get_all_source_files SRCS PUBLIC_HEADERS PRIVATE_HEADERS)
string(TOUPPER ${PROJECT_NAME} _project)
unset(_tmp_srcs)
unset(_tmp_public_headers)
unset(_tmp_private_headers)
package_get_all_activated_packages(_activated_list)
foreach(_pkg_name ${_activated_list})
_package_get_source_files(${_pkg_name}
_pkg_srcs
_pkg_public_headers
_pkg_private_headers
)
list(APPEND _tmp_srcs ${_pkg_srcs})
list(APPEND _tmp_public_headers ${_pkg_public_headers})
list(APPEND _tmp_private_headers ${_pkg_private_headers})
endforeach()
set(${SRCS} ${_tmp_srcs} PARENT_SCOPE)
set(${PUBLIC_HEADERS} ${_tmp_public_headers} PARENT_SCOPE)
set(${PRIVATE_HEADERS} ${_tmp_private_headers} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get include directories
# ------------------------------------------------------------------------------
function(package_get_all_include_directories inc_dirs)
set(_tmp)
package_get_all_activated_packages(_activated_list)
foreach(_pkg_name ${_activated_list})
foreach(_type SRCS PUBLIC_HEADERS PRIVATE_HEADERS)
foreach(_file ${${_pkg_name}_${_type}})
get_filename_component(_path "${_file}" PATH)
list(APPEND _tmp "${_path}")
endforeach()
endforeach()
endforeach()
if(_tmp)
list(REMOVE_DUPLICATES _tmp)
endif()
set(${inc_dirs} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get external libraries informations
# ------------------------------------------------------------------------------
function(package_get_all_external_informations)
cmake_parse_arguments(_opt "" "PRIVATE_INCLUDE;INTERFACE_INCLUDE;LIBRARIES" "" ${ARGN})
foreach(_type PRIVATE INTERFACE)
if(_opt_${_type}_INCLUDE)
_package_get_variable_for_external_dependencies(INCLUDE_DIR ${_type} tmp_INCLUDE_DIR)
foreach(_dir ${tmp_INCLUDE_DIR})
string(FIND "${_dir}" "${CMAKE_CURRENT_SOURCE_DIR}" _pos)
if(NOT _pos EQUAL -1)
list(REMOVE_ITEM tmp_INCLUDE_DIR ${_dir})
endif()
endforeach()
set(${_opt_${_type}_INCLUDE} ${tmp_INCLUDE_DIR} PARENT_SCOPE)
endif()
endforeach()
if(_opt_LIBRARIES)
_package_get_variable_for_external_dependencies(LIBRARIES PRIVATE tmp_LIBRARIES)
_package_get_variable_for_external_dependencies(LIBRARIES INTERFACE tmp_LIBRARIES_INTERFACE)
set(${_opt_LIBRARIES} ${tmp_LIBRARIES} ${tmp_LIBRARIES_INTERFACE} PARENT_SCOPE)
endif()
endfunction()
# ------------------------------------------------------------------------------
# Get export list for all activated packages
# ------------------------------------------------------------------------------
function(package_get_all_export_list export_list)
_package_get_variable_for_activated(EXPORT_LIST _tmp)
set(${export_list} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get definitions like external projects
# ------------------------------------------------------------------------------
function(package_get_all_definitions definitions)
_package_get_variable_for_activated(OPTION_NAME _tmp)
set(${definitions} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get extra dependencies like external projects
# ------------------------------------------------------------------------------
function(package_get_all_extra_dependencies deps)
_package_get_variable_for_activated(EXTRA_DEPENDENCY _tmp)
set(${deps} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get extra infos
# ------------------------------------------------------------------------------
function(package_get_all_test_folders TEST_DIRS)
_package_get_variable_for_activated(TEST_FOLDER _tmp)
set(${TEST_DIRS} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get compilation flags
# ------------------------------------------------------------------------------
function(package_get_all_compilation_flags LANG FLAGS)
_package_get_variable_for_activated(COMPILE_${LANG}_FLAGS _tmp_flags)
string(REPLACE ";" " " _flags "${_tmp_flags}")
set(${FLAGS} ${_flags} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Documentation informations
# ------------------------------------------------------------------------------
function(package_get_all_documentation_files doc_files)
set(_tmp_DOC_FILES)
package_get_all_activated_packages(_activated_list)
foreach(_pkg_name ${_activated_list})
_package_get_manual_folder(${_pkg_name} _doc_dir)
_package_get_documentation_files(${_pkg_name} _doc_files)
foreach(_doc_file ${_doc_files})
list(APPEND _tmp_DOC_FILES ${_doc_dir}/${_doc_file})
endforeach()
endforeach()
if(_tmp_DOC_FILES)
list(REMOVE_DUPLICATES _tmp_DOC_FILES)
endif()
set(${doc_files} ${_tmp_DOC_FILES} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Get package systems dependencies
# ------------------------------------------------------------------------------
function(package_get_all_package_system_dependency system deps)
string(TOUPPER ${system} _u_system)
_package_get_variable_for_activated(PACKAGE_SYSTEM_${_u_system} _tmp)
set(${deps} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# List packages
# ------------------------------------------------------------------------------
function(package_get_all_activated_packages activated_list)
package_get_project_variable(ACTIVATED_PACKAGE_LIST _activated_list)
set(${activated_list} ${_activated_list} PARENT_SCOPE)
endfunction()
function(package_get_all_deactivated_packages deactivated_list)
package_get_project_variable(DEACTIVATED_PACKAGE_LIST _deactivated_list)
set(${deactivated_list} ${_deactivated_list} PARENT_SCOPE)
endfunction()
function(package_get_all_packages packages_list)
package_get_project_variable(ALL_PACKAGES_LIST _packages_list)
set(${packages_list} ${_packages_list} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# List all the needed features
# ------------------------------------------------------------------------------
function(package_get_all_features_public features)
_package_get_variable_for_activated(FEATURES_PUBLIC _tmp)
set(${features} ${_tmp} PARENT_SCOPE)
endfunction()
function(package_get_all_features_private features)
_package_get_variable_for_activated(FEATURES_PRIVATE _tmp)
set(${features} ${_tmp} PARENT_SCOPE)
endfunction()
# ------------------------------------------------------------------------------
# Callbacks
# ------------------------------------------------------------------------------
function(package_on_enabled_script pkg script)
package_get_name(${pkg} _pkg_name)
_package_on_enable_script(${_pkg_name} "${script}")
endfunction()
# ------------------------------------------------------------------------------
# list all the packages in the PACKAGE_FOLDER
# extra packages can be given with an EXTRA_PACKAGE_FOLDER
# <package_folder>/<package>.cmake
#
# Extra packages folder structure
# <extra_package_folder>/<package>/package.cmake
# /src
# /test
# /manual
#
# ------------------------------------------------------------------------------
function(package_list_packages PACKAGE_FOLDER)
cmake_parse_arguments(_opt_pkg
"NO_AUTO_COMPILE_FLAGS"
"SOURCE_FOLDER;EXTRA_PACKAGES_FOLDER;TEST_FOLDER;MANUAL_FOLDER"
""
${ARGN})
string(TOUPPER ${PROJECT_NAME} _project)
# Cleaning some states to start correctly
package_get_all_packages(_already_loaded_pkg)
foreach(_pkg_name ${_already_loaded_pkg})
_package_unset_extra_dependencies(${_pkg_name})
_package_unset_dependencies(${_pkg_name} PRIVATE)
_package_unset_dependencies(${_pkg_name} INTERFACE)
_package_unset_activated(${_pkg_name})
endforeach()
if(_opt_pkg_SOURCE_FOLDER)
set(_src_folder "${_opt_pkg_SOURCE_FOLDER}")
else()
set(_src_folder "src/")
endif()
get_filename_component(_abs_src_folder ${_src_folder} ABSOLUTE)
if(_opt_pkg_TEST_FOLDER)
set(_test_folder "${_opt_pkg_TEST_FOLDER}")
else()
set(_test_folder "test/")
endif()
if(_opt_pkg_MANUAL_FOLDER)
set(_manual_folder "${_opt_pkg_MANUAL_FOLDER}")
else()
set(_manual_folder "doc/manual")
endif()
if(_opt_pkg_NO_AUTO_COMPILE_FLAGS)
package_set_project_variable(NO_AUTO_COMPILE_FLAGS TRUE)
else()
package_set_project_variable(NO_AUTO_COMPILE_FLAGS FALSE)
endif()
get_filename_component(_abs_test_folder ${_test_folder} ABSOLUTE)
get_filename_component(_abs_manual_folder ${_manual_folder} ABSOLUTE)
# check all the packages in the <package_folder>
file(GLOB _package_list "${PACKAGE_FOLDER}/*.cmake")
set(_package_files)
foreach(_pkg ${_package_list})
get_filename_component(_basename ${_pkg} NAME)
if(NOT _basename MATCHES "^\\.#.*")
list(APPEND _package_files ${_basename})
endif()
endforeach()
if(_package_files)
list(SORT _package_files)
endif()
# check all packages
set(_packages_list_all)
foreach(_pkg_file ${_package_files})
string(REGEX REPLACE "[0-9]+_" "" _pkg_file_stripped ${_pkg_file})
string(REGEX REPLACE "\\.cmake" "" _pkg ${_pkg_file_stripped})
set(_current_src_folder "${_abs_src_folder}" CACHE INTERNAL "" FORCE)
set(_current_test_folder "${_abs_test_folder}" CACHE INTERNAL "" FORCE)
set(_current_manual_folder "${_abs_manual_folder}" CACHE INTERNAL "" FORCE)
include("${PACKAGE_FOLDER}/${_pkg_file}")
unset(_current_src_folder CACHE)
unset(_current_test_folder CACHE)
unset(_current_manual_folder CACHE)
endforeach()
# check the extra_packages if they exists
if(_opt_pkg_EXTRA_PACKAGES_FOLDER)
file(GLOB _extra_package_list RELATIVE
"${_opt_pkg_EXTRA_PACKAGES_FOLDER}" "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/*")
foreach(_pkg ${_extra_package_list})
if(EXISTS "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/package.cmake")
package_get_name(${_pkg} _pkg_name)
_package_set_filename(${_pkg_name}
"${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/package.cmake")
set(_current_src_folder "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/src" CACHE INTERNAL "" FORCE)
if(EXISTS "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/test")
set(_current_test_folder "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/test" CACHE INTERNAL "" FORCE)
endif()
if(EXISTS "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/manual")
set(_current_manual_folder "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/manual" CACHE INTERNAL "" FORCE)
endif()
list(APPEND _extra_pkg_src_folders "${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/src")
include("${_opt_pkg_EXTRA_PACKAGES_FOLDER}/${_pkg}/package.cmake")
unset(_current_src_folder CACHE)
unset(_current_test_folder CACHE)
unset(_current_manual_folder CACHE)
endif()
endforeach()
endif()
_package_build_rdependencies()
_package_load_packages()
_package_check_files_exists()
_package_check_files_registered(${_abs_src_folder} ${_extra_pkg_src_folders})
# Load boost components if boost was loaded
package_is_activated(Boost _ret)
if(_ret)
_package_load_boost_components()
endif()
endfunction()
# ------------------------------------------------------------------------------
# macro to include internal/external packages packages
# package_declare(<package real name>
# [EXTERNAL] [META] [ADVANCED] [NOT_OPTIONAL]
# [DESCRIPTION <description>] [DEFAULT <default_value>]
# [DEPENDS <pkg> ...]
# [BOOST_COMPONENTS <pkg> ...]
# [EXTRA_PACKAGE_OPTIONS <opt> ...]
# [COMPILE_FLAGS <lang> <flags>]
# [SYSTEM <bool> [ <script_to_compile> ]]
# [FEATURES_PUBLIC <feature> ...]
# [FEATURES_PRIVATE <feature> ...])
# ------------------------------------------------------------------------------
function(package_declare pkg)
package_get_name(${pkg} _pkg_name)
_package_set_real_name(${_pkg_name} ${pkg})
_package_set_filename(${_pkg_name} "${CMAKE_CURRENT_LIST_FILE}")
_package_set_sources_folder(${_pkg_name} "${_current_src_folder}")
_package_variable_unset(SRCS ${_pkg_name})
_package_variable_unset(PUBLIC_HEADERS ${_pkg_name})
_package_variable_unset(PRIVATE_HEADERS ${_pkg_name})
if(_current_test_folder)
_package_set_tests_folder(${_pkg_name} "${_current_test_folder}")
endif()
if(_current_manual_folder)
_package_set_manual_folder(${_pkg_name} "${_current_manual_folder}")
endif()
package_get_project_variable(ALL_PACKAGES_LIST _tmp_pkg_list)
list(APPEND _tmp_pkg_list ${_pkg_name})
list(REMOVE_DUPLICATES _tmp_pkg_list)
package_set_project_variable(ALL_PACKAGES_LIST ${_tmp_pkg_list})
set(_options
EXTERNAL
NOT_OPTIONAL
META
ADVANCED
EXCLUDE_FROM_ALL)
set(_one_valued_options
DEFAULT
DESCRIPTION)
set(_multi_valued_options
DEPENDS
EXTRA_PACKAGE_OPTIONS
COMPILE_FLAGS
BOOST_COMPONENTS
SYSTEM
FEATURES_PUBLIC
FEATURES_PRIVATE)
cmake_parse_arguments(_opt_pkg
"${_options}"
"${_one_valued_options}"
"${_multi_valued_options}"
${ARGN})
if(_opt_pkg_UNPARSED_ARGUMENTS)
message("You gave to many arguments while registering the package ${pkg} \"${_opt_pkg_UNPARSED_ARGUMENTS}\"")
endif()
# set the nature
if(_opt_pkg_EXTERNAL)
_package_set_nature(${_pkg_name} "external")
elseif(_opt_pkg_META)
_package_set_nature(${_pkg_name} "meta")
else()
_package_set_nature(${_pkg_name} "internal")
endif()
_package_declare_option(${_pkg_name})
# set description
if(_opt_pkg_DESCRIPTION)
_package_set_description(${_pkg_name} ${_opt_pkg_DESCRIPTION})
else()
_package_set_description(${_pkg_name} "")
endif()
_package_get_option_name(${_pkg_name} _option_name)
_package_get_description(${_pkg_name} _description)
# get the default value
if(DEFINED _opt_pkg_DEFAULT)
set(_default ${_opt_pkg_DEFAULT})
else()
if(_opt_pkg_NOT_OPTIONAL)
set(_default ON)
else()
set(_default OFF)
endif()
endif()
# set the option if needed
if(_opt_pkg_NOT_OPTIONAL)
_package_get_nature(${_pkg_name} _nature)
_package_set_nature(${_pkg_name} "${_nature}_not_optional")
set(${_option_name} ${_default} CACHE INTERNAL "${_description}" FORCE)
mark_as_advanced(${_option_name})
else()
option(${_option_name} "${_description}" ${_default})
if(_opt_pkg_ADVANCED OR _opt_pkg_EXTERNAL)
mark_as_advanced(${_option_name})
endif()
endif()
# Set the option for third-partie that can be compiled as an ExternalProject
if(DEFINED _opt_pkg_SYSTEM)
list(LENGTH _opt_pkg_SYSTEM _length)
list(GET _opt_pkg_SYSTEM 0 _bool)
_package_set_system_option(${_pkg_name} ${_bool})
if(_length GREATER 1)
list(GET _opt_pkg_SYSTEM 1 _script)
_package_set_system_script(${_pkg_name} ${_script})
endif()
endif()
# set the dependecies
if(_opt_pkg_DEPENDS)
set(_deps_types PRIVATE INTERFACE)
cmake_parse_arguments(_pkg_deps
""
""
"${_deps_types}"
${_opt_pkg_DEPENDS})
list(APPEND _pkg_deps_PRIVATE ${_pkg_deps_UNPARSED_ARGUMENTS})
foreach(_type ${_deps_types})
set(_depends)
foreach(_dep ${_pkg_deps_${_type}})
package_get_name(${_dep} _dep_pkg_name)
list(APPEND _depends ${_dep_pkg_name})
endforeach()
_package_add_dependencies(${_pkg_name} ${_type} ${_depends})
endforeach()
endif()
# keep the extra option for the future find package
if(_opt_pkg_EXTRA_PACKAGE_OPTIONS)
_package_set_find_package_extra_options(${_pkg_name} "${_opt_pkg_EXTRA_PACKAGE_OPTIONS}")
endif()
# register the compilation flags
if(_opt_pkg_COMPILE_FLAGS)
set(_languages C CXX Fortran)
cmake_parse_arguments(_compile_flags
"" "" "${_languages}"
${_opt_pkg_COMPILE_FLAGS}
)
# this is done to maintain backward compatibility
if(_compile_flags_UNPARSED_ARGUMENTS)
set(_compile_flags_CXX ${_compile_flags_UNPARSED_ARGUMENTS})
endif()
foreach(_lang ${_languages})
if(_compile_flags_${_lang})
_package_set_compile_flags(${_pkg_name} ${_lang} ${_compile_flags_${_lang}})
else()
_package_unset_compile_flags(${_pkg_name} ${_lang})
endif()
endforeach()
endif()
# set the boost dependencies
if(_opt_pkg_BOOST_COMPONENTS)
_package_set_boost_component_needed(${_pkg_name} "${_opt_pkg_BOOST_COMPONENTS}")
endif()
set(_variables FEATURES_PUBLIC FEATURES_PRIVATE EXCLUDE_FROM_ALL)
foreach(_variable ${_variables})
if(_opt_pkg_${_variable})
_package_set_variable(${_variable} ${_pkg_name} "${_opt_pkg_${_variable}}")
endif()
endforeach()
endfunction()
# ------------------------------------------------------------------------------
# declare the source files of a given package
#
# package_declare_sources(<package> <list of sources>
# SOURCES <source file> ...
# PUBLIC_HEADER <header file> ...
# PRIVATE_HEADER <header file> ...)
# ------------------------------------------------------------------------------
function(package_declare_sources pkg)
package_get_name(${pkg} _pkg_name)
# get 3 lists, if none of the options given try to distinguish the different lists
cmake_parse_arguments(_opt_pkg
""
""
"SOURCES;PUBLIC_HEADERS;PRIVATE_HEADERS"
${ARGN})
set(_tmp_srcs ${_opt_pkg_SOURCES})
set(_tmp_pub_hdrs ${_opt_pkg_PUBLIC_HEADER})
set(_tmp_pri_hdrs ${_opt_pkg_PRIVATE_HEADERS})
foreach(_file ${_opt_pkg_UNPARSED_ARGUMENTS})
if(${_file} MATCHES ".*inline.*\\.cc")
list(APPEND _tmp_pub_hdrs ${_file})
elseif(${_file} MATCHES ".*\\.h+")
list(APPEND _tmp_pub_hdrs ${_file})
else()
list(APPEND _tmp_srcs ${_file})
endif()
endforeach()
_package_get_sources_folder(${_pkg_name} _src_folder)
foreach(_type _srcs _pub_hdrs _pri_hdrs)
set(${_type})
foreach(_file ${_tmp${_type}})
# get the full name
- list(APPEND ${_type} "${_src_folder}/${_file}")
+ set(_full_path "${_src_folder}/${_file}")
+ list(APPEND ${_type} "${_full_path}")
endforeach()
endforeach()
set(${_pkg_name}_SRCS "${_srcs}"
CACHE INTERNAL "List of sources files" FORCE)
set(${_pkg_name}_PUBLIC_HEADERS "${_pub_hdrs}"
CACHE INTERNAL "List of public header files" FORCE)
set(${_pkg_name}_PRIVATE_HEADERS "${_pri_hdrs}"
CACHE INTERNAL "List of private header files" FORCE)
endfunction()
# ------------------------------------------------------------------------------
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index fbe0b1ed8..80c9e4b78 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1,223 +1,231 @@
#===============================================================================
# @file CMakeLists.txt
#
# @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
# @author Nicolas Richart <nicolas.richart@epfl.ch>
#
# @date creation: Mon Jun 14 2010
# @date last modification: Tue Feb 13 2018
#
# @brief CMake file for the library
#
# @section LICENSE
#
# Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne) Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
#
# Akantu is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
#
# Akantu is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License along with Akantu. If not, see <http://www.gnu.org/licenses/>.
#
#===============================================================================
#===============================================================================
# Package Management
#===============================================================================
package_get_all_source_files(
AKANTU_LIBRARY_SRCS
AKANTU_LIBRARY_PUBLIC_HDRS
AKANTU_LIBRARY_PRIVATE_HDRS
)
package_get_all_include_directories(
AKANTU_LIBRARY_INCLUDE_DIRS
)
package_get_all_external_informations(
PRIVATE_INCLUDE AKANTU_PRIVATE_EXTERNAL_INCLUDE_DIR
INTERFACE_INCLUDE AKANTU_INTERFACE_EXTERNAL_INCLUDE_DIR
LIBRARIES AKANTU_EXTERNAL_LIBRARIES
)
package_get_all_compilation_flags(CXX _cxx_flags)
set(AKANTU_EXTRA_CXX_FLAGS
"${_cxx_flags}" CACHE STRING "Extra flags defined by loaded packages" FORCE)
mark_as_advanced(AKANTU_EXTRA_CXX_FLAGS)
foreach(src_ ${AKANTU_SPIRIT_SOURCES})
set_property(SOURCE ${src_} PROPERTY COMPILE_FLAGS "-g0 -Werror")
endforeach()
#===========================================================================
# header for blas/lapack (any other fortran libraries)
#===========================================================================
package_is_activated(BLAS _blas_activated)
package_is_activated(LAPACK _lapack_activated)
if(_blas_activated OR _lapack_activated)
if(CMAKE_Fortran_COMPILER)
# ugly hack
set(CMAKE_Fortran_COMPILER_LOADED TRUE)
endif()
include(FortranCInterface)
FortranCInterface_HEADER(
"${CMAKE_CURRENT_BINARY_DIR}/aka_fortran_mangling.hh"
MACRO_NAMESPACE "AKA_FC_")
mark_as_advanced(CDEFS)
list(APPEND AKANTU_LIBRARY_PUBLIC_HDRS
"${CMAKE_CURRENT_BINARY_DIR}/aka_fortran_mangling.hh"
)
endif()
list(APPEND AKANTU_LIBRARY_INCLUDE_DIRS "${CMAKE_CURRENT_BINARY_DIR}")
set(AKANTU_INCLUDE_DIRS
${CMAKE_CURRENT_BINARY_DIR} ${AKANTU_LIBRARY_INCLUDE_DIRS}
CACHE INTERNAL "Internal include directories to link with Akantu as a subproject")
#===========================================================================
# configurations
#===========================================================================
package_get_all_material_includes(AKANTU_MATERIAL_INCLUDES)
package_get_all_material_lists(AKANTU_MATERIAL_LISTS)
configure_file(model/solid_mechanics/material_list.hh.in
"${CMAKE_CURRENT_BINARY_DIR}/material_list.hh" @ONLY)
package_get_element_lists()
configure_file(common/aka_element_classes_info.hh.in
"${CMAKE_CURRENT_BINARY_DIR}/aka_element_classes_info.hh" @ONLY)
configure_file(common/aka_config.hh.in
"${CMAKE_CURRENT_BINARY_DIR}/aka_config.hh" @ONLY)
list(APPEND AKANTU_LIBRARY_PUBLIC_HDRS
"${CMAKE_CURRENT_BINARY_DIR}/material_list.hh"
"${CMAKE_CURRENT_BINARY_DIR}/aka_element_classes_info.hh"
"${CMAKE_CURRENT_BINARY_DIR}/aka_config.hh")
#===============================================================================
# Debug infos
#===============================================================================
set(AKANTU_GDB_DIR ${PROJECT_SOURCE_DIR}/cmake)
if(UNIX)
string(TOUPPER "${CMAKE_BUILD_TYPE}" _u_build_type)
if(_u_build_type STREQUAL "DEBUG" OR _u_build_type STREQUAL "RELWITHDEBINFO")
configure_file(${PROJECT_SOURCE_DIR}/cmake/libakantu-gdb.py.in
"${PROJECT_BINARY_DIR}/libakantu-gdb.py"
@ONLY)
configure_file(${PROJECT_SOURCE_DIR}/cmake/akantu-debug.cc.in
"${PROJECT_BINARY_DIR}/akantu-debug.cc" @ONLY)
list(APPEND AKANTU_LIBRARY_SRCS ${PROJECT_BINARY_DIR}/akantu-debug.cc)
endif()
else()
find_program(GDB_EXECUTABLE gdb)
if(GDB_EXECUTABLE)
execute_process(COMMAND
${GDB_EXECUTABLE} --batch -x "${PROJECT_SOURCE_DIR}/cmake/gdb_python_path"
OUTPUT_VARIABLE AKANTU_PYTHON_GDB_DIR
ERROR_QUIET
RESULT_VARIABLE _res)
if(_res EQUAL 0 AND UNIX)
set(GDB_USER_CONFIG $ENV{HOME}/.gdb/auto-load)
file(MAKE_DIRECTORY ${GDB_USER_CONFIG})
configure_file(${PROJECT_SOURCE_DIR}/cmake/libakantu-gdb.py.in
"${GDB_USER_CONFIG}/${CMAKE_SHARED_LIBRARY_PREFIX}akantu${CMAKE_SHARED_LIBRARY_SUFFIX}.${AKANTU_VERSION}-gdb.py"
@ONLY)
endif()
endif()
endif()
#===============================================================================
# Library generation
#===============================================================================
add_library(akantu ${AKANTU_LIBRARY_SRCS})
target_include_directories(akantu
PRIVATE $<BUILD_INTERFACE:${AKANTU_INCLUDE_DIRS}>
INTERFACE $<INSTALL_INTERFACE:include/akantu>
)
# small trick for build includes in public
set_property(TARGET akantu APPEND PROPERTY INTERFACE_INCLUDE_DIRECTORIES
$<BUILD_INTERFACE:${AKANTU_INCLUDE_DIRS}>)
target_include_directories(akantu SYSTEM
PUBLIC ${AKANTU_INTERFACE_EXTERNAL_INCLUDE_DIR}
)
target_include_directories(akantu SYSTEM
PRIVATE ${AKANTU_PRIVATE_EXTERNAL_INCLUDE_DIR}
)
target_link_libraries(akantu ${AKANTU_EXTERNAL_LIBRARIES})
set_target_properties(akantu
PROPERTIES
${AKANTU_LIBRARY_PROPERTIES} # this contains the version
COMPILE_FLAGS "${_cxx_flags}"
#PRIVATE_HEADER ${AKANTU_LIBRARY_PRIVATE_HDRS}
)
if(AKANTU_LIBRARY_PUBLIC_HDRS)
set_property(TARGET akantu PROPERTY PUBLIC_HEADER ${AKANTU_LIBRARY_PUBLIC_HDRS})
endif()
if(AKANTU_LIBRARY_PRIVATE_HDRS)
set_property(TARGET akantu PROPERTY PRIVATE_HEADER ${AKANTU_LIBRARY_PRIVATE_HDRS})
endif()
if(NOT CMAKE_VERSION VERSION_LESS 3.1)
package_get_all_features_public(_PUBLIC_features)
package_get_all_features_private(_PRIVATE_features)
foreach(_type PRIVATE PUBLIC)
if(_${_type}_features)
target_compile_features(akantu ${_type} ${_${_type}_features})
endif()
endforeach()
else()
set_target_properties(akantu
PROPERTIES
CXX_STANDARD 14
)
endif()
package_get_all_extra_dependencies(_extra_target_dependencies)
if(_extra_target_dependencies)
# This only adding todo: find a solution for when a dependency was add the is removed...
add_dependencies(akantu ${_extra_target_dependencies})
endif()
package_get_all_export_list(AKANTU_EXPORT_LIST)
list(APPEND AKANTU_EXPORT_LIST akantu)
# TODO separate public from private headers
install(TARGETS akantu
EXPORT ${AKANTU_TARGETS_EXPORT}
LIBRARY DESTINATION lib COMPONENT lib
ARCHIVE DESTINATION lib COMPONENT lib
RUNTIME DESTINATION bin COMPONENT bin
PUBLIC_HEADER DESTINATION include/akantu/ COMPONENT dev
)
if("${AKANTU_TARGETS_EXPORT}" STREQUAL "AkantuTargets")
install(EXPORT AkantuTargets DESTINATION share/cmake/${PROJECT_NAME}
COMPONENT dev)
#Export for build tree
export(EXPORT AkantuTargets
FILE "${CMAKE_BINARY_DIR}/AkantuTargets.cmake")
export(PACKAGE Akantu)
endif()
-
-
+#===============================================================================
+# Adding module names for debug
+package_get_all_packages(_pkg_list)
+foreach(_pkg ${_pkg_list})
+ _package_get_real_name(${_pkg} _pkg_name)
+ _package_get_source_files(${_pkg} _srcs _public_hdrs _private_hdrs)
+ string(TOLOWER "${_pkg_name}" _l_package_name)
+ set_property(SOURCE ${_srcs} ${_public_hdrs} ${_private_hdrs}
+ APPEND PROPERTY COMPILE_DEFINITIONS AKANTU_MODULE=${_l_package_name})
+endforeach()
# print out the list of materials
generate_material_list()
register_target_to_tidy(akantu)
diff --git a/src/common/aka_error.hh b/src/common/aka_error.hh
index cf737bbc8..bf0c3fe78 100644
--- a/src/common/aka_error.hh
+++ b/src/common/aka_error.hh
@@ -1,339 +1,358 @@
/**
* @file aka_error.hh
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Mon Jun 14 2010
* @date last modification: Tue Feb 20 2018
*
* @brief error management and internal exceptions
*
* @section LICENSE
*
* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include <sstream>
#include <typeinfo>
#include <utility>
+#include <set>
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
#ifndef __AKANTU_ERROR_HH__
#define __AKANTU_ERROR_HH__
namespace akantu {
/* -------------------------------------------------------------------------- */
enum DebugLevel {
dbl0 = 0,
dblError = 0,
dblAssert = 0,
dbl1 = 1,
dblException = 1,
dblCritical = 1,
dbl2 = 2,
dblMajor = 2,
dbl3 = 3,
dblCall = 3,
dblSecondary = 3,
dblHead = 3,
dbl4 = 4,
dblWarning = 4,
dbl5 = 5,
dblInfo = 5,
dbl6 = 6,
dblIn = 6,
dblOut = 6,
dbl7 = 7,
dbl8 = 8,
dblTrace = 8,
dbl9 = 9,
dblAccessory = 9,
dbl10 = 10,
dblDebug = 42,
dbl100 = 100,
dblDump = 100,
dblTest = 1337
};
/* -------------------------------------------------------------------------- */
#define AKANTU_LOCATION \
"(" << __func__ << "(): " << __FILE__ << ":" << __LINE__ << ")"
/* -------------------------------------------------------------------------- */
namespace debug {
void setDebugLevel(const DebugLevel & level);
const DebugLevel & getDebugLevel();
void initSignalHandler();
std::string demangle(const char * symbol);
#ifndef SWIG
std::string exec(const std::string & cmd);
#endif
void printBacktrace(int sig);
void exit(int status) __attribute__((noreturn));
/* ------------------------------------------------------------------------ */
/// exception class that can be thrown by akantu
class Exception : public std::exception {
/* ---------------------------------------------------------------------- */
/* Constructors/Destructors */
/* ---------------------------------------------------------------------- */
protected:
explicit Exception(std::string info = "")
: _info(std::move(info)), _file("") {}
public:
//! full constructor
Exception(std::string info, std::string file, unsigned int line)
: _info(std::move(info)), _file(std::move(file)), _line(line) {}
//! destructor
~Exception() noexcept override = default;
/* ---------------------------------------------------------------------- */
/* Methods */
/* ---------------------------------------------------------------------- */
public:
const char * what() const noexcept override { return _info.c_str(); }
virtual const std::string info() const noexcept {
std::stringstream stream;
stream << debug::demangle(typeid(*this).name()) << " : " << _info << " ["
<< _file << ":" << _line << "]";
return stream.str();
}
public:
void setInfo(const std::string & info) { _info = info; }
void setFile(const std::string & file) { _file = file; }
void setLine(unsigned int line) { _line = line; }
/* ---------------------------------------------------------------------- */
/* Class Members */
/* ---------------------------------------------------------------------- */
protected:
/// exception description and additionals
std::string _info;
private:
/// file it is thrown from
std::string _file;
/// ligne it is thrown from
unsigned int _line{0};
};
class CriticalError : public Exception {};
class AssertException : public Exception {};
class NotImplementedException : public Exception {};
/// standard output stream operator
inline std::ostream & operator<<(std::ostream & stream,
const Exception & _this) {
stream << _this.what();
return stream;
}
/* --------------------------------------------------------------------------
*/
class Debugger {
public:
Debugger();
virtual ~Debugger();
Debugger(const Debugger &) = default;
Debugger & operator=(const Debugger &) = default;
void exit(int status) __attribute__((noreturn));
void throwException(const std::string & info, const std::string & file,
unsigned int line, bool, const std::string &) const
noexcept(false) __attribute__((noreturn));
/*----------------------------------------------------------------------- */
template <class Except>
void throwCustomException(const Except & ex, const std::string & info,
const std::string & file, unsigned int line) const
noexcept(false) __attribute__((noreturn));
/*----------------------------------------------------------------------- */
template <class Except>
void throwCustomException(const Except & ex, const std::string & file,
unsigned int line) const noexcept(false)
__attribute__((noreturn));
void printMessage(const std::string & prefix, const DebugLevel & level,
const std::string & info) const;
void setOutStream(std::ostream & out) { cout = &out; }
std::ostream & getOutStream() { return *cout; }
public:
void setParallelContext(int rank, int size);
void setDebugLevel(const DebugLevel & level);
const DebugLevel & getDebugLevel() const;
void setLogFile(const std::string & filename);
std::ostream & getOutputStream();
- inline bool testLevel(const DebugLevel & level) const {
- return (this->level >= (level));
+ inline bool testLevel(const DebugLevel & level,
+ const std::string & module = "core") const {
+ auto level_reached = (this->level >= (level));
+ auto correct_module =
+ (level <= dblCritical) or (modules_to_debug.size() == 0) or
+ (modules_to_debug.find(module) != modules_to_debug.end());
+ return level_reached and correct_module;
}
void printBacktrace(bool on_off) { this->print_backtrace = on_off; }
bool printBacktrace() { return this->print_backtrace; }
+ void addModuleToDebug(const std::string & id) {
+ modules_to_debug.insert(id);
+ }
+ void removeModuleToDebug(const std::string & id) {
+ auto it = modules_to_debug.find(id);
+ if(it != modules_to_debug.end())
+ modules_to_debug.erase(it);
+ }
private:
std::string parallel_context;
std::ostream * cout;
bool file_open;
DebugLevel level;
bool print_backtrace;
+ std::set<std::string> modules_to_debug;
};
extern Debugger debugger;
} // namespace debug
+/* -------------------------------------------------------------------------- */
+#define AKANTU_STRINGIZE_(str) #str
+#define AKANTU_STRINGIZE(str) AKANTU_STRINGIZE_(str)
/* -------------------------------------------------------------------------- */
#define AKANTU_STRINGSTREAM_IN(_str, _sstr) \
; \
do { \
std::stringstream _dbg_s_info; \
_dbg_s_info << _sstr; \
_str = _dbg_s_info.str(); \
} while (false)
/* -------------------------------------------------------------------------- */
#define AKANTU_EXCEPTION(info) AKANTU_EXCEPTION_(info, false)
#define AKANTU_SILENT_EXCEPTION(info) AKANTU_EXCEPTION_(info, true)
#define AKANTU_EXCEPTION_(info, silent) \
do { \
std::stringstream _dbg_str; \
_dbg_str << info; \
std::stringstream _dbg_loc; \
_dbg_loc << AKANTU_LOCATION; \
::akantu::debug::debugger.throwException( \
_dbg_str.str(), __FILE__, __LINE__, silent, _dbg_loc.str()); \
} while (false)
#define AKANTU_CUSTOM_EXCEPTION_INFO(ex, info) \
do { \
std::stringstream _dbg_str; \
_dbg_str << info; \
::akantu::debug::debugger.throwCustomException(ex, _dbg_str.str(), \
__FILE__, __LINE__); \
} while (false)
#define AKANTU_CUSTOM_EXCEPTION(ex) \
do { \
::akantu::debug::debugger.throwCustomException(ex, __FILE__, __LINE__); \
} while (false)
/* -------------------------------------------------------------------------- */
#ifdef AKANTU_NDEBUG
#define AKANTU_DEBUG_TEST(level) (false)
#define AKANTU_DEBUG_LEVEL_IS_TEST() \
- (::akantu::debug::debugger.testLevel(dblTest))
+ (::akantu::debug::debugger.testLevel(dblTest, AKANTU_STRINGIZE(AKANTU_MODULE)))
#define AKANTU_DEBUG(level, info)
#define AKANTU_DEBUG_(pref, level, info)
#define AKANTU_DEBUG_IN()
#define AKANTU_DEBUG_OUT()
#define AKANTU_DEBUG_INFO(info)
#define AKANTU_DEBUG_WARNING(info)
#define AKANTU_DEBUG_TRACE(info)
#define AKANTU_DEBUG_ASSERT(test, info)
#define AKANTU_ERROR(info) \
AKANTU_CUSTOM_EXCEPTION_INFO(::akantu::debug::CriticalError(), info)
/* -------------------------------------------------------------------------- */
#else
#define AKANTU_DEBUG(level, info) AKANTU_DEBUG_(" ", level, info)
#define AKANTU_DEBUG_(pref, level, info) \
do { \
std::string _dbg_str; \
AKANTU_STRINGSTREAM_IN(_dbg_str, info << " " << AKANTU_LOCATION); \
::akantu::debug::debugger.printMessage(pref, level, _dbg_str); \
} while (false)
-#define AKANTU_DEBUG_TEST(level) (::akantu::debug::debugger.testLevel(level))
+#define AKANTU_DEBUG_TEST(level) \
+ (::akantu::debug::debugger.testLevel(level, AKANTU_STRINGIZE(AKANTU_MODULE)))
#define AKANTU_DEBUG_LEVEL_IS_TEST() \
(::akantu::debug::debugger.testLevel(dblTest))
#define AKANTU_DEBUG_IN() \
AKANTU_DEBUG_("==>", ::akantu::dblIn, __func__ << "()")
#define AKANTU_DEBUG_OUT() \
AKANTU_DEBUG_("<==", ::akantu::dblOut, __func__ << "()")
#define AKANTU_DEBUG_INFO(info) AKANTU_DEBUG_("---", ::akantu::dblInfo, info)
#define AKANTU_DEBUG_WARNING(info) \
AKANTU_DEBUG_("/!\\", ::akantu::dblWarning, info)
#define AKANTU_DEBUG_TRACE(info) AKANTU_DEBUG_(">>>", ::akantu::dblTrace, info)
#define AKANTU_DEBUG_ASSERT(test, info) \
do { \
if (not(test)) \
AKANTU_CUSTOM_EXCEPTION_INFO(::akantu::debug::AssertException(), \
"assert [" << #test << "] " << info); \
} while (false)
#define AKANTU_ERROR(info) \
do { \
AKANTU_DEBUG_("!!! ", ::akantu::dblError, info); \
AKANTU_CUSTOM_EXCEPTION_INFO(::akantu::debug::CriticalError(), info); \
} while (false)
#endif // AKANTU_NDEBUG
#define AKANTU_TO_IMPLEMENT() \
AKANTU_CUSTOM_EXCEPTION_INFO(::akantu::debug::NotImplementedException(), \
__func__ << " : not implemented yet !")
/* -------------------------------------------------------------------------- */
namespace debug {
/* ------------------------------------------------------------------------ */
template <class Except>
void Debugger::throwCustomException(const Except & ex,
const std::string & info,
const std::string & file,
unsigned int line) const noexcept(false) {
auto & nc_ex = const_cast<Except &>(ex);
nc_ex.setInfo(info);
nc_ex.setFile(file);
nc_ex.setLine(line);
throw ex;
}
/* ------------------------------------------------------------------------ */
template <class Except>
void Debugger::throwCustomException(const Except & ex,
const std::string & file,
unsigned int line) const noexcept(false) {
auto & nc_ex = const_cast<Except &>(ex);
nc_ex.setFile(file);
nc_ex.setLine(line);
throw ex;
}
} // namespace debug
} // namespace akantu
#endif /* __AKANTU_ERROR_HH__ */